genome.fa.s10.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  17  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7337357--7337413	29	1.9	30	83	16	75	43	7	5	43	1.54
7338214--7338242	3	9.7	3	100	0	58	65	0	0	34	0.93
7341228--7341274	23	2.0	22	84	15	60	27	10	4	57	1.51
7342846--7342885	20	2.1	19	85	4	53	55	0	7	37	1.29
7346088--7346113	13	2.0	13	100	0	52	30	30	0	38	1.58
7346296--7346372	24	3.1	25	73	14	70	44	1	2	51	1.23
7346540--7346580	20	2.0	21	90	4	66	41	0	2	56	1.13
7349366--7349396	15	2.0	16	93	6	55	83	12	3	0	0.75
7350182--7350224	2	21.5	2	100	0	86	48	0	51	0	1.00
7350841--7350867	3	9.0	3	100	0	54	66	0	33	0	0.92
7351543--7351606	22	2.9	22	84	11	69	67	3	0	29	1.06
7352926--7352977	24	2.2	24	92	0	86	61	0	5	32	1.20
7355999--7356049	21	2.4	21	81	12	59	50	0	1	47	1.12
7362989--7363046	28	2.1	28	86	0	80	32	0	3	63	1.11
7364828--7364852	12	2.1	12	100	0	50	60	0	0	40	0.97
7380436--7380481	23	2.1	23	84	11	62	30	13	0	56	1.37
7380479--7380512	14	2.4	14	85	0	50	38	0	0	61	0.96
7386658--7386711	23	2.3	23	87	3	72	74	14	0	11	1.08
7386697--7386733	19	1.9	19	88	0	56	72	8	5	13	1.24
7386734--7386793	20	3.0	20	80	7	77	68	20	5	6	1.32
7387801--7387841	9	4.7	9	80	14	50	70	0	0	29	0.87
7388082--7388120	11	3.5	11	89	0	60	66	0	2	30	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7388102--7388152	18	2.7	18	74	17	50	60	1	0	37	1.08
7388114--7388166	26	2.1	25	82	10	63	56	1	0	41	1.10
7388142--7388168	6	4.5	6	100	0	54	51	0	0	48	1.00
7389088--7389143	2	28.0	2	100	0	112	50	0	0	50	1.00
7389324--7389364	17	2.4	17	84	11	57	58	0	0	41	0.98
7390009--7390034	8	3.2	8	100	0	52	46	0	0	53	1.00
7392201--7392233	14	2.4	14	89	0	57	66	0	33	0	0.92
7392945--7392979	12	2.9	12	82	0	52	48	0	25	25	1.51
7392945--7392979	18	1.9	18	94	0	61	48	0	25	25	1.51
7393744--7393768	2	12.5	2	100	0	50	52	0	0	48	1.00
7401023--7401054	13	2.5	13	94	0	55	34	3	0	62	1.11
7414894--7414950	22	2.6	21	78	10	60	56	3	1	38	1.27
7424133--7424961	207	4.0	207	98	0	1586	39	21	16	22	1.92
7428653--7428699	14	2.9	17	78	18	64	53	0	0	46	1.00
7428658--7428708	14	3.6	14	76	7	50	52	1	0	45	1.12
7429452--7429528	38	2.0	38	100	0	154	15	33	12	37	1.86
7429700--7429729	2	15.0	2	100	0	60	0	0	50	50	1.00
7430325--7430365	21	2.0	21	85	0	55	48	7	0	43	1.30
7430324--7430371	21	2.2	21	77	3	51	45	8	0	45	1.33
7436510--7436565	18	3.1	18	82	10	60	58	1	0	39	1.08
7436534--7436568	6	5.8	6	100	0	70	51	0	0	48	1.00
7442008--7442076	29	2.3	29	83	14	79	49	13	13	24	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7443983--7444025	2	21.5	2	100	0	86	51	0	48	0	1.00
7462376--7462446	30	2.3	31	76	11	74	45	9	1	43	1.46
7462974--7463087	60	1.9	61	80	12	137	44	4	10	40	1.59
7483032--7483071	21	1.9	21	84	0	53	40	22	5	32	1.76
7483832--7483891	2	30.0	2	100	0	120	50	0	0	50	1.00
7488049--7488085	3	12.3	3	100	0	74	67	0	0	32	0.91
7488630--7488737	23	4.7	23	87	3	137	38	20	12	27	1.89
7489235--7489267	16	2.1	16	88	5	50	72	0	9	18	1.10
7496116--7496173	23	2.5	22	75	5	62	55	0	1	43	1.10
7496669--7496703	6	5.8	6	100	0	70	17	65	17	0	1.27
7514603--7514651	3	16.3	3	100	0	98	67	0	32	0	0.91
7518784--7518817	14	2.3	15	95	5	61	32	11	20	35	1.89
7526073--7526112	14	2.9	14	96	0	71	57	0	2	40	1.12
7526635--7526664	9	3.3	9	90	0	51	56	0	0	43	0.99
7526635--7526680	18	2.5	18	86	10	58	54	0	0	45	0.99
7529338--7529464	23	5.4	23	77	9	114	12	21	22	44	1.85
7539613--7539669	29	1.9	30	86	10	82	35	0	7	57	1.26
7542723--7542810	11	7.6	11	66	14	52	64	5	3	26	1.31
7543581--7543616	17	2.1	17	89	0	54	16	30	13	38	1.88
7545699--7545733	16	2.1	16	89	5	52	77	8	8	5	1.13
7545705--7545735	16	1.9	16	93	0	53	80	6	6	6	1.02
7553976--7554048	29	2.5	29	93	0	119	35	10	21	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7554266--7554466	59	3.5	59	79	8	157	35	3	25	35	1.73
7554290--7554433	29	4.9	29	77	14	136	34	2	24	38	1.67
7554315--7554483	29	5.9	29	73	14	136	35	3	23	37	1.72
7554289--7554433	59	2.5	60	86	7	192	34	2	24	38	1.67
7556152--7556222	27	2.5	28	82	8	83	57	9	0	32	1.31
7556134--7556188	16	3.4	16	82	5	74	54	3	0	41	1.18
7556832--7556868	14	2.8	14	88	8	51	48	10	0	40	1.38
7557257--7557313	29	2.0	29	85	0	78	52	5	14	28	1.62
7566695--7566776	38	2.1	40	93	6	141	39	9	21	29	1.86
7569415--7569465	24	2.3	23	77	12	54	50	5	3	39	1.45
7570943--7570971	3	9.7	3	100	0	58	68	0	0	31	0.89
7573244--7573342	23	4.3	23	88	2	137	11	22	23	43	1.85
7576701--7577149	201	2.3	197	83	6	554	26	27	20	26	1.99
7581985--7582031	16	2.8	17	77	6	51	61	2	4	31	1.27
7584318--7584369	24	2.1	25	85	3	70	28	13	13	44	1.82
7589168--7589276	57	1.9	57	81	7	132	29	11	12	46	1.76
7593073--7593387	59	5.4	59	85	1	382	33	4	29	32	1.78
7593071--7593387	117	2.7	118	85	2	424	34	5	29	31	1.79
7593073--7593532	29	15.8	28	68	17	172	33	4	28	33	1.76
7593370--7593533	59	2.8	58	76	12	167	31	3	27	38	1.72
7593108--7593500	88	4.5	88	75	11	304	33	3	28	33	1.75
7593454--7593546	29	3.2	28	78	14	91	26	4	29	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7593953--7593979	2	13.5	2	100	0	54	48	0	0	51	1.00
7594660--7594710	3	16.0	3	92	8	75	33	0	0	66	0.92
7594663--7594709	23	2.0	23	95	0	85	31	0	0	68	0.90
7595414--7595489	11	6.8	11	76	8	73	53	2	2	40	1.28
7595398--7595489	17	5.5	16	76	15	71	53	2	2	42	1.25
7596276--7596325	22	2.1	25	82	10	61	26	4	4	66	1.27
7596508--7596534	14	1.9	14	100	0	54	55	7	0	37	1.28
7597568--7597605	18	2.1	18	90	0	58	28	10	10	50	1.70
7614761--7614817	25	2.3	25	84	6	71	52	1	0	45	1.11
7615037--7615074	18	2.2	18	85	4	51	50	5	13	31	1.63
7615180--7615219	18	2.2	19	90	4	64	35	15	0	50	1.44
7615602--7615643	22	1.9	22	85	0	57	66	0	2	30	1.04
7617855--7617890	12	2.8	14	80	20	51	50	2	0	47	1.15
7620581--7620616	16	2.2	16	95	0	63	69	0	13	16	1.19
7625448--7625498	10	4.9	10	83	11	59	84	0	13	1	0.71
7625449--7625491	5	8.6	5	87	10	52	86	0	13	0	0.58
7646386--7646424	15	2.7	15	88	4	53	48	0	0	51	1.00
7646394--7646432	16	2.4	17	83	12	55	51	0	0	48	1.00
7647302--7647397	47	2.1	46	94	2	165	36	6	10	46	1.63
7657658--7657962	114	2.7	113	77	4	328	30	17	15	36	1.91
7658192--7658251	31	1.9	31	89	0	93	21	11	23	43	1.85
7658615--7658648	17	1.9	18	88	5	52	32	0	5	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7660069--7660160	30	3.1	30	84	3	105	30	6	3	59	1.38
7661156--7661318	62	2.6	61	87	4	213	34	14	19	31	1.92
7664525--7664604	38	2.3	33	85	12	99	41	8	12	37	1.74
7664535--7664610	38	2.0	38	100	0	152	39	7	15	36	1.77
7664786--7664830	13	3.6	13	75	22	51	26	11	20	42	1.85
7664996--7665115	58	2.1	58	92	3	197	47	20	0	31	1.51
7666570--7666639	34	2.1	34	97	0	131	34	10	20	35	1.86
7667671--7667746	29	2.6	28	83	6	98	60	2	0	36	1.11
7667683--7667743	29	2.1	29	93	3	104	63	3	0	32	1.10
7667683--7667758	29	2.6	29	87	8	93	61	3	1	32	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135