genome.fa.s10.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  93  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31402741--31402813	36	2.0	36	94	0	128	31	4	13	50	1.60
31406914--31407019	26	4.1	26	85	4	142	60	9	3	26	1.45
31406969--31407009	22	2.0	20	85	9	55	63	4	0	31	1.15
31407494--31407535	18	2.3	19	80	12	52	16	28	35	19	1.93
31409325--31409357	17	1.9	17	88	11	50	48	3	0	48	1.17
31427735--31427797	24	2.6	24	82	2	81	52	9	9	28	1.65
31431703--31431750	18	2.8	17	78	12	53	64	0	25	10	1.25
31433557--31433589	12	2.8	12	95	0	57	24	33	36	6	1.80
31437741--31437775	3	11.7	3	100	0	70	31	0	0	68	0.90
31438696--31438746	25	2.1	24	85	10	68	33	1	7	56	1.39
31439067--31439113	16	2.9	16	87	6	60	70	4	6	19	1.26
31439671--31440029	147	2.4	148	89	4	548	42	10	3	43	1.55
31440219--31440320	52	2.0	51	80	5	116	51	7	0	39	1.37
31443626--31443663	14	2.6	14	95	4	67	34	0	0	65	0.93
31443635--31443713	33	2.4	34	80	12	94	36	2	5	55	1.35
31445234--31445283	21	2.6	21	84	12	63	36	2	0	62	1.07
31445422--31445446	3	8.3	3	100	0	50	32	0	0	68	0.90
31446521--31446576	28	2.0	29	85	3	78	14	7	5	73	1.23
31459461--31459540	4	20.2	4	84	2	81	18	3	28	48	1.65
31477213--31477452	123	1.9	124	84	2	322	31	17	17	34	1.93
31478082--31478448	29	12.4	29	79	3	313	32	1	26	38	1.67
31478082--31478448	30	12.4	29	76	9	305	32	1	26	38	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31478101--31478448	58	5.9	59	81	6	357	33	1	25	38	1.66
31478101--31478453	88	4.0	87	80	6	361	33	1	26	37	1.67
31479520--31479584	34	1.9	34	87	3	96	47	3	0	49	1.17
31480306--31480394	6	14.8	6	75	20	80	48	1	5	44	1.33
31480306--31480381	17	4.7	17	79	12	81	48	0	6	44	1.28
31483493--31483653	20	8.1	20	94	1	279	11	19	33	35	1.88
31483493--31483653	79	2.0	80	93	1	279	11	19	33	35	1.88
31490073--31490194	20	6.1	20	88	0	172	12	20	32	34	1.90
31497662--31497713	24	2.2	24	82	0	59	7	28	13	50	1.69
31505739--31505768	14	2.2	14	94	5	53	36	10	23	30	1.87
31524516--31524566	25	2.0	25	96	0	93	27	13	23	35	1.93
31533175--31533216	17	2.5	17	76	3	50	76	2	11	9	1.12
31548891--31548974	30	2.9	29	84	5	98	52	4	5	36	1.47
31548935--31549019	29	2.9	29	79	15	86	48	10	9	31	1.70
31548964--31549019	26	2.0	29	90	10	91	46	12	10	30	1.76
31549313--31549359	2	23.5	2	100	0	94	51	0	0	48	1.00
31550454--31550645	96	2.0	96	83	6	246	39	15	17	27	1.90
31550920--31551240	30	10.8	29	84	9	300	34	6	25	33	1.82
31550875--31550962	45	2.0	45	82	8	108	36	6	22	34	1.81
31550920--31551240	59	5.4	59	84	8	329	34	6	25	33	1.82
31551896--31551990	32	3.2	30	75	16	81	27	16	0	55	1.41
31552034--31552077	20	2.1	22	91	8	74	29	27	22	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31552285--31552360	3	25.0	3	93	2	125	34	1	0	64	1.02
31553098--31553160	17	3.7	17	86	0	90	53	3	0	42	1.16
31553093--31553147	23	2.4	23	79	11	60	52	3	0	43	1.18
31553479--31554320	201	4.2	201	93	0	1400	23	23	18	34	1.96
31566115--31566424	88	3.5	85	80	14	269	33	6	25	34	1.82
31566110--31566512	29	13.7	31	79	10	318	34	5	25	34	1.80
31566167--31566549	60	6.5	60	75	9	231	34	4	25	35	1.76
31566401--31566554	30	5.2	30	83	0	184	36	2	24	36	1.70
31568359--31568429	17	4.2	17	74	16	67	53	2	0	43	1.15
31568364--31568408	22	2.0	22	86	8	63	55	4	0	40	1.20
31568373--31568427	28	2.0	28	85	0	74	56	3	0	40	1.17
31569495--31569553	6	10.3	6	85	10	88	0	16	1	81	0.78
31570580--31570645	30	2.2	30	94	5	116	24	18	4	53	1.63
31570767--31570821	24	2.3	24	81	6	67	32	3	7	56	1.44
31579580--31579620	21	2.0	21	95	0	73	26	17	21	34	1.95
31587565--31587597	17	1.9	17	88	11	50	42	21	9	27	1.83
31588120--31588191	21	3.4	21	94	3	94	27	16	23	31	1.96
31588888--31589048	58	2.7	60	87	2	238	24	19	11	44	1.84
31595704--31595737	7	4.9	7	100	0	68	58	0	41	0	0.98
31596042--31596081	16	2.5	16	100	0	80	35	7	30	27	1.84
31596251--31596396	58	2.5	55	83	13	177	50	0	2	46	1.20
31599939--31600065	58	2.2	58	83	9	154	50	2	0	46	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31603940--31603967	8	3.5	8	100	0	56	10	0	0	89	0.49
31604707--31604757	19	2.7	19	78	9	59	56	1	1	39	1.22
31604746--31604867	29	4.3	28	79	8	115	68	1	1	28	1.09
31604746--31604868	47	2.6	46	80	12	133	68	1	1	28	1.08
31604730--31604844	58	2.0	59	84	8	155	66	0	1	31	1.08
31604807--31604840	11	3.2	11	91	4	52	76	2	0	20	0.92
31604702--31604872	10	18.0	9	67	18	71	64	1	1	31	1.13
31604747--31604872	9	13.2	10	70	20	67	66	1	1	30	1.10
31606617--31606654	19	2.0	20	85	15	53	44	0	5	50	1.24
31608060--31608108	22	2.3	21	83	13	64	30	2	0	67	1.02
31608357--31608423	35	1.9	35	91	8	111	23	13	13	49	1.77
31608564--31608600	16	2.4	16	86	4	58	16	0	43	40	1.48
31610015--31610073	23	2.5	23	77	2	64	44	15	10	30	1.79
31620875--31620935	32	1.9	32	93	0	104	27	6	24	40	1.80
31620977--31621038	32	1.9	32	90	0	97	27	11	24	37	1.89
31626461--31626490	14	2.1	14	93	0	51	30	33	20	16	1.94
31661600--31661653	21	2.6	21	85	5	65	33	22	11	33	1.89
31662337--31662689	36	9.8	36	92	0	571	28	11	23	36	1.90
31670797--31670985	30	6.3	28	76	10	162	41	20	4	33	1.72
31670816--31670985	60	2.8	59	83	3	198	42	20	4	32	1.71
31670797--31670985	90	2.1	89	81	2	209	41	20	4	33	1.72
31679984--31680014	14	2.1	15	94	5	55	77	3	6	12	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31683512--31683660	50	2.9	50	80	6	149	36	13	14	36	1.85
31683863--31683895	17	1.9	17	88	11	50	66	6	0	27	1.15
31685190--31685243	21	2.6	21	82	5	56	7	27	1	62	1.32
31685424--31685457	16	2.2	15	94	5	59	11	17	2	67	1.34
31687052--31687174	50	2.4	50	83	5	149	36	13	15	34	1.86
31687376--31687408	17	1.9	17	88	11	50	66	3	0	30	1.06
31688269--31688346	23	3.4	21	74	10	57	30	19	28	21	1.97
31703212--31703241	14	2.2	14	94	5	53	30	23	10	36	1.87
31712161--31712207	19	2.5	18	80	16	51	78	2	17	2	0.94
31715430--31715465	18	2.0	18	88	0	54	38	11	36	13	1.81
31719599--31719642	22	2.0	22	90	0	70	25	34	15	25	1.95
31719850--31720246	199	2.0	199	99	0	785	31	17	18	32	1.94
31723588--31723641	26	2.1	26	92	0	90	37	18	18	25	1.94
31728450--31728546	37	2.6	37	91	1	160	32	17	27	21	1.96
31729264--31729315	21	2.5	21	84	6	70	26	13	28	30	1.94
31746099--31746131	12	2.7	13	86	13	52	81	0	18	0	0.68
31773748--31773798	24	2.1	24	85	0	66	27	19	25	27	1.99
31776210--31776272	24	2.6	24	84	0	81	30	22	22	25	1.99
31776210--31776284	24	3.1	23	77	7	78	32	20	22	25	1.98
31777822--31777897	24	3.1	24	86	1	98	22	22	23	31	1.98
31778474--31778527	21	2.4	23	87	9	76	22	11	25	40	1.87
31783568--31783610	19	2.3	19	87	0	59	37	23	2	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31783800--31783921	45	2.7	45	83	0	163	25	25	19	29	1.99
31791362--31791460	19	5.3	19	86	3	103	38	26	2	33	1.68
31791701--31791855	45	3.4	45	79	1	159	28	24	18	29	1.98
31792626--31792869	60	4.1	60	87	4	359	41	19	8	31	1.80
31792626--31792875	118	2.1	118	90	3	394	41	20	8	30	1.81
31806669--31806844	83	2.1	83	82	6	205	30	13	16	39	1.87
31831544--31831577	16	2.1	16	94	0	59	38	8	0	52	1.33
31832504--31832535	5	6.4	5	92	0	55	3	15	59	21	1.50
31832909--31833003	47	2.0	47	100	0	190	45	4	23	27	1.71
31834523--31834566	18	2.4	18	80	0	52	43	11	2	43	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135