genome.fa.s10.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  44  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16157785--16157841	23	2.5	23	76	23	59	42	0	5	52	1.24
16161901--16161947	20	2.3	20	85	10	60	44	8	8	38	1.65
16177040--16177089	23	2.1	25	88	7	77	34	0	0	66	0.92
16177100--16177136	16	2.3	16	90	0	56	64	2	0	32	1.07
16177160--16177215	9	6.3	9	75	2	51	33	0	3	62	1.12
16177390--16177427	18	2.1	19	85	5	51	39	0	2	57	1.12
16185232--16185268	17	2.2	17	90	4	58	56	5	0	37	1.22
16185700--16185747	22	2.1	22	81	11	53	56	8	14	20	1.64
16185970--16186058	39	2.3	39	80	7	92	59	3	14	22	1.50
16185991--16186074	18	4.6	18	71	10	62	61	3	11	22	1.45
16185986--16186070	39	2.3	35	78	15	89	63	3	11	21	1.42
16191139--16191286	58	2.5	59	82	6	185	53	2	1	43	1.20
16191175--16191236	26	2.4	27	76	7	67	48	1	1	48	1.21
16191264--16191313	24	2.1	23	85	10	66	60	2	4	34	1.27
16193648--16193681	8	4.2	8	84	0	50	67	11	20	0	1.21
16196435--16196462	2	14.0	2	100	0	56	0	0	50	50	1.00
16196916--16196976	27	2.3	27	94	0	104	62	9	8	19	1.51
16199959--16199997	17	2.3	17	90	0	60	15	12	25	46	1.81
16204350--16204381	3	10.7	3	100	0	64	65	0	0	34	0.93
16208207--16208246	22	2.0	21	85	14	57	57	7	2	32	1.40
16214468--16214545	8	9.0	8	76	18	50	78	0	20	1	0.83
16214467--16214543	9	8.6	9	71	16	61	80	0	18	1	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16214467--16214543	29	2.8	26	78	17	86	80	0	18	1	0.78
16214487--16214543	16	3.9	14	81	13	62	80	0	19	0	0.71
16214496--16214541	21	2.2	21	88	7	67	80	0	19	0	0.71
16215401--16215533	50	2.7	50	82	2	142	34	19	24	21	1.96
16215455--16215562	50	2.2	50	79	3	119	37	15	22	24	1.93
16215597--16216169	80	7.2	80	79	5	394	33	23	16	27	1.95
16215625--16216050	121	3.5	119	83	3	437	32	22	17	27	1.96
16215597--16216169	201	2.9	198	85	4	726	33	23	16	27	1.95
16215987--16216169	79	2.3	80	82	5	230	34	24	13	26	1.93
16215597--16216169	39	14.4	40	72	9	318	33	23	16	27	1.95
16216691--16216865	67	2.7	65	85	11	227	42	0	3	53	1.17
16216698--16216865	63	2.7	62	85	11	227	43	0	3	52	1.18
16221782--16221825	21	2.2	20	84	11	56	9	36	0	54	1.32
16228572--16228621	22	2.3	22	100	0	100	26	30	10	34	1.89
16243154--16243283	66	2.0	66	85	0	179	38	17	16	26	1.92
16244737--16244817	41	2.0	40	87	2	117	20	12	29	37	1.90
16253799--16253862	29	2.2	29	77	0	74	51	14	12	21	1.75
16256233--16256276	21	2.0	22	82	4	54	15	0	13	70	1.17
16256298--16256373	23	3.3	23	85	5	91	30	11	17	40	1.85
16256339--16256384	23	2.0	23	83	8	58	39	10	17	32	1.84
16257430--16257523	28	3.4	27	85	4	125	32	19	5	42	1.73
16263082--16263130	16	3.2	16	70	18	50	61	10	0	28	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16263163--16263257	30	3.2	30	66	8	86	36	4	12	46	1.61
16263957--16264041	43	2.0	43	81	4	100	31	11	11	44	1.77
16264603--16264691	45	2.0	45	86	0	124	33	31	15	19	1.93
16264686--16264727	21	2.0	21	90	4	68	19	33	16	30	1.94
16269562--16269615	24	2.2	24	77	6	56	44	7	1	46	1.42
16274751--16274794	18	2.4	18	81	7	54	61	2	0	36	1.09
16275430--16275501	31	2.3	31	80	4	83	58	9	2	29	1.44
16276158--16276208	15	3.5	14	80	17	59	54	13	1	29	1.50
16283096--16283217	63	1.9	65	86	5	176	52	4	8	35	1.50
16292792--16292832	21	2.0	21	90	0	64	9	63	2	24	1.37
16295675--16295822	58	2.5	59	83	6	194	53	1	1	43	1.17
16295674--16295814	14	9.7	15	63	24	52	52	0	1	45	1.14
16295800--16295849	24	2.1	23	85	10	66	60	2	4	34	1.27
16297357--16297383	2	13.5	2	100	0	54	48	0	51	0	1.00
16298871--16298898	14	2.0	14	100	0	56	35	0	0	64	0.94
16299441--16299486	24	1.9	24	86	0	65	19	39	2	39	1.64
16299463--16299518	17	3.3	17	71	26	55	19	37	1	41	1.62
16299451--16299518	34	2.0	34	97	0	127	17	39	2	39	1.65
16299977--16300053	33	2.3	34	81	4	93	28	7	16	46	1.75
16304946--16304994	17	2.9	17	73	11	55	18	32	4	44	1.68
16309132--16309158	14	1.9	14	100	0	54	14	18	29	37	1.91
16312480--16312509	14	2.1	14	100	0	60	76	16	0	6	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16312503--16312572	36	1.9	36	88	5	106	51	8	0	40	1.33
16313126--16313226	46	2.2	46	98	0	193	20	28	16	33	1.95
16313334--16313376	2	21.5	2	100	0	86	48	0	0	51	1.00
16314809--16314877	29	2.3	29	80	9	77	28	2	2	65	1.22
16315223--16315255	1	33.0	1	93	0	57	0	96	3	0	0.20
16322254--16322286	3	11.0	3	100	0	66	33	0	33	33	1.58
16325867--16325917	26	2.0	26	88	0	75	50	1	11	35	1.50
16339234--16339280	20	2.3	20	77	3	58	40	0	0	59	0.97
16339240--16339276	11	3.5	11	82	17	51	35	0	0	64	0.94
16341001--16341035	17	2.0	17	88	5	52	48	2	0	48	1.16
16341378--16341430	15	3.3	15	74	10	52	52	0	0	47	1.00
16343337--16343409	25	2.9	25	63	15	60	46	9	4	39	1.56
16344945--16344988	18	2.5	17	78	7	52	36	9	4	50	1.55
16346260--16346333	32	2.3	32	84	9	89	40	0	5	54	1.24
16346280--16346331	18	3.3	15	75	19	52	42	0	3	53	1.19
16351608--16351665	17	3.4	16	74	9	53	58	1	0	39	1.08
16370807--16370840	14	2.2	16	90	10	54	35	0	0	64	0.94
16370808--16370845	18	2.0	19	85	10	51	34	2	0	63	1.09
16373330--16373361	15	2.1	15	94	0	55	50	0	0	50	1.00
16373886--16373924	16	2.5	16	91	4	62	35	0	0	64	0.94
16375892--16375933	11	4.0	11	81	12	52	66	0	0	33	0.92
16377067--16377280	23	9.5	23	71	14	142	42	21	24	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16377160--16377280	48	2.6	46	87	7	172	39	23	25	11	1.88
16379727--16380050	30	10.9	29	78	8	231	35	23	2	38	1.69
16379769--16380051	60	4.8	60	80	6	299	34	24	3	38	1.71
16379722--16379977	89	2.9	90	80	6	263	36	22	1	39	1.65
16379736--16380047	118	2.6	118	81	6	317	35	22	2	39	1.69
16379769--16380050	30	9.5	29	79	6	246	34	24	3	38	1.71
16384806--16384847	19	2.2	20	91	4	68	50	4	7	38	1.51
16393296--16393343	16	3.0	16	80	16	55	45	0	0	54	0.99
16404227--16404374	55	2.7	56	84	4	192	47	14	5	33	1.67
16407655--16407698	2	22.0	2	95	0	79	52	0	0	47	1.00
16421949--16422011	22	2.8	23	82	2	83	42	0	1	55	1.09
16424027--16424062	14	2.5	15	86	4	56	52	5	2	38	1.39
16424964--16425009	24	1.9	24	82	8	58	52	2	2	43	1.25
16425104--16425143	19	2.0	20	90	4	64	42	0	0	57	0.98
16433543--16433577	16	2.2	16	100	0	70	57	0	14	28	1.38
16443476--16443549	9	7.8	9	76	14	69	33	1	2	62	1.18
16443476--16443549	19	3.8	19	75	12	71	33	1	2	62	1.18
16443468--16443549	29	2.8	28	78	15	87	32	1	3	62	1.21
16448800--16448853	26	2.0	27	89	3	83	46	1	31	20	1.61
16449329--16449371	20	2.2	20	83	8	52	53	4	6	34	1.49
16450077--16450222	58	2.5	56	82	11	179	50	1	2	46	1.21
16454178--16454226	25	2.0	25	100	0	98	28	20	6	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16455047--16455467	139	3.0	139	95	1	765	42	20	14	22	1.88
16457985--16458048	30	2.1	30	85	0	83	59	6	1	32	1.32
16464536--16464565	3	10.0	3	100	0	60	66	0	33	0	0.92
16465488--16465538	23	2.3	23	82	3	59	54	1	3	39	1.30
16465504--16465552	23	2.1	23	85	7	64	53	2	0	44	1.12
16471948--16472008	29	2.1	28	82	8	70	36	13	9	40	1.77
16473980--16474023	16	2.8	16	85	0	61	72	13	0	13	1.12
16474018--16474061	20	2.2	19	84	8	52	77	2	4	15	1.04
16474002--16474071	23	2.9	24	79	10	72	77	5	2	14	1.07
16474028--16474071	5	8.8	5	80	9	54	77	2	2	18	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135