genome.fa.s10.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  128  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41710940--41711008	27	2.6	26	82	15	79	62	2	1	33	1.19
41711341--41711373	16	2.1	16	94	0	57	39	0	0	60	0.97
41711341--41711395	15	3.8	14	77	13	58	45	1	1	50	1.22
41713958--41713992	18	1.9	18	88	11	54	51	0	0	48	1.00
41714788--41714831	21	2.0	23	86	13	65	38	13	29	18	1.89
41717279--41717344	20	3.3	20	75	8	62	9	65	12	13	1.48
41717388--41717420	11	2.8	12	86	9	50	36	0	0	63	0.95
41717635--41717719	40	2.1	40	95	0	152	37	11	8	42	1.72
41722251--41722275	8	3.1	8	100	0	50	28	0	24	48	1.52
41728043--41728112	31	2.3	30	78	14	72	41	5	5	47	1.51
41730500--41730597	51	1.9	52	89	2	153	36	12	18	32	1.88
41732723--41732811	31	2.8	31	82	1	106	46	6	17	29	1.74
41738651--41738722	23	3.1	22	75	16	65	51	2	0	45	1.15
41741085--41741120	16	2.3	16	90	4	56	83	13	0	2	0.76
41741084--41741120	15	2.3	17	81	13	51	83	13	0	2	0.74
41741995--41742188	30	6.6	29	76	12	139	35	25	2	36	1.70
41741997--41742178	59	3.1	60	81	11	189	35	25	2	36	1.71
41742084--41742217	30	4.6	29	78	12	98	35	28	3	32	1.75
41744928--41745011	38	2.2	39	95	4	152	50	3	17	28	1.63
41745713--41745772	29	2.1	29	87	6	86	55	15	0	30	1.41
41750640--41750713	37	2.0	37	94	0	130	43	0	25	31	1.55
41751136--41751387	38	6.6	38	79	4	251	16	18	28	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41751136--41751390	76	3.4	76	83	2	307	16	18	28	37	1.92
41751151--41751390	114	2.1	114	82	5	288	15	18	27	37	1.92
41751187--41751428	114	2.1	114	80	6	276	17	18	26	37	1.93
41751136--41751422	76	3.8	74	77	9	247	17	18	27	36	1.93
41751985--41752032	19	2.4	20	75	6	53	31	14	4	50	1.62
41753271--41753353	36	2.3	36	83	4	105	36	27	8	27	1.86
41759485--41759518	12	2.8	12	90	0	50	55	8	2	32	1.45
41759596--41759640	15	2.8	16	83	10	56	26	2	2	68	1.12
41759592--41759654	32	2.0	32	84	3	83	28	3	1	66	1.16
41765060--41765084	2	12.5	2	100	0	50	0	0	48	52	1.00
41769645--41769829	92	2.0	92	98	0	361	41	20	20	18	1.91
41778406--41778439	17	1.9	18	94	5	61	67	5	0	26	1.13
41778575--41778619	21	2.1	21	87	0	63	71	26	2	0	0.98
41778633--41778673	18	2.2	19	91	4	66	65	21	4	7	1.37
41778575--41778683	21	5.1	21	71	15	62	68	21	3	6	1.27
41778668--41778757	21	4.2	21	68	16	58	68	13	6	11	1.37
41778680--41778772	22	4.3	22	74	9	75	66	12	7	12	1.43
41782620--41782666	21	2.2	21	80	0	58	48	10	4	36	1.57
41783983--41784169	30	6.3	29	79	4	151	34	5	22	36	1.79
41785071--41785104	15	2.5	13	90	9	50	76	0	0	23	0.79
41785990--41786028	18	2.1	19	95	4	71	17	0	5	76	0.96
41796617--41796682	29	2.3	29	86	5	89	28	16	7	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41797741--41797796	6	9.2	6	75	11	51	44	1	1	51	1.22
41798025--41798118	30	3.1	29	78	13	100	51	6	17	25	1.69
41798032--41798137	30	3.5	31	75	15	96	44	8	18	28	1.79
41798479--41798527	22	2.2	22	81	0	62	67	6	2	24	1.24
41804942--41805016	31	2.4	30	78	6	87	42	6	5	45	1.53
41805533--41805558	3	8.7	3	100	0	52	0	30	0	69	0.89
41806623--41806656	18	1.9	18	88	5	52	29	0	5	64	1.17
41808340--41808399	2	30.0	2	100	0	120	50	0	0	50	1.00
41813656--41813705	22	2.3	22	78	0	55	48	12	4	36	1.59
41822431--41822648	29	7.5	28	72	20	153	34	1	30	33	1.67
41822389--41822680	58	5.0	59	87	4	362	33	3	31	32	1.75
41822431--41822680	117	2.1	117	91	2	405	34	1	30	34	1.66
41822425--41822680	58	4.4	60	90	4	382	33	1	31	33	1.68
41822485--41822691	30	7.1	28	68	22	106	32	1	30	34	1.67
41823602--41823651	22	2.3	22	85	0	64	18	24	44	14	1.86
41823701--41823784	3	26.7	3	71	9	51	41	1	1	55	1.15
41823702--41823771	7	10.3	7	77	14	67	42	1	1	54	1.18
41823701--41823777	19	4.2	19	75	20	65	42	1	1	54	1.16
41823764--41823793	15	2.0	15	93	0	51	36	0	3	60	1.14
41824443--41824482	13	3.2	12	83	13	53	25	10	17	47	1.78
41824506--41824544	17	2.4	17	91	4	62	53	0	0	46	1.00
41826118--41826153	18	1.9	19	88	5	56	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41826312--41826355	4	11.0	4	95	0	79	50	22	0	27	1.50
41830204--41830421	29	7.5	28	72	20	162	34	1	30	33	1.69
41830162--41830453	58	5.0	59	87	4	371	33	3	31	31	1.76
41830204--41830453	117	2.1	117	92	2	414	34	1	30	33	1.68
41830198--41830453	58	4.4	60	90	4	391	33	1	31	32	1.69
41830258--41830464	30	7.1	28	67	22	97	32	1	30	34	1.69
41831373--41831422	22	2.3	22	85	0	64	16	22	46	16	1.84
41831530--41831606	17	4.4	17	76	15	77	42	0	3	53	1.19
41831530--41831637	6	18.0	6	75	14	89	48	0	2	48	1.22
41831546--41831606	31	2.0	31	86	0	86	42	0	4	52	1.23
41833112--41833422	154	2.0	160	85	8	431	24	16	12	46	1.81
41833516--41833623	30	3.6	29	81	7	101	37	25	0	37	1.62
41833541--41833948	59	6.9	58	89	3	543	33	29	3	33	1.76
41850294--41850934	68	9.4	68	92	1	1032	35	18	18	26	1.95
41850294--41850934	137	4.7	138	92	1	1053	35	18	18	26	1.95
41851239--41851315	17	4.4	17	76	15	77	42	0	3	53	1.19
41851239--41851346	6	18.0	6	75	14	89	48	0	2	48	1.22
41851255--41851315	31	2.0	31	86	0	86	42	0	4	52	1.23
41851375--41851408	14	2.4	14	90	0	50	32	32	17	17	1.94
41852832--41853197	159	2.3	159	83	8	413	23	17	14	44	1.86
41853238--41853312	30	2.5	29	84	4	96	41	20	2	36	1.66
41853238--41853566	29	11.2	29	65	25	124	36	27	3	32	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41853297--41853729	176	2.5	175	87	1	650	33	28	4	33	1.77
41853299--41853731	59	7.4	58	88	2	571	33	28	4	33	1.78
41854907--41854973	6	9.9	7	76	15	61	43	1	1	53	1.19
41854909--41854979	19	3.9	18	75	18	67	43	1	1	53	1.18
41854966--41854995	15	2.0	15	93	0	51	36	0	3	60	1.14
41857982--41858008	8	3.4	8	100	0	54	66	0	0	33	0.92
41858215--41858249	18	1.9	18	88	11	54	45	0	5	48	1.26
41858398--41858429	13	2.5	13	100	0	64	53	6	15	25	1.65
41860276--41860305	11	2.6	12	94	5	53	26	0	0	73	0.84
41860302--41860344	16	2.7	15	82	7	50	72	2	2	23	1.08
41861460--41861615	30	5.2	30	84	10	194	42	21	1	33	1.64
41861460--41861615	61	2.6	60	86	5	224	42	21	1	33	1.64
41863344--41863491	23	6.4	23	81	7	149	42	21	23	12	1.86
41863390--41863512	46	2.7	46	84	2	167	43	21	23	11	1.85
41863344--41863512	69	2.4	66	81	11	187	42	21	24	11	1.86
41867285--41867507	50	4.5	50	84	1	295	36	20	23	19	1.95
41867267--41867507	99	2.4	100	90	2	378	36	21	22	20	1.96
41867285--41867532	50	5.0	50	80	5	263	36	20	22	19	1.95
41867568--41867765	80	2.4	86	81	11	273	31	20	20	27	1.97
41867562--41867768	40	5.0	40	70	13	145	31	21	19	27	1.98
41867599--41867791	80	2.4	79	90	1	287	34	20	17	27	1.95
41867599--41867916	40	8.0	40	75	5	243	33	22	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41867759--41867904	79	1.8	79	83	2	195	35	21	14	28	1.93
41867599--41867916	119	2.7	120	78	3	356	33	22	17	27	1.96
41868393--41868422	11	2.6	12	94	5	53	26	0	0	73	0.84
41869245--41869287	22	2.0	22	85	0	59	37	0	18	44	1.50
41869578--41869733	31	5.1	31	83	6	203	42	19	2	34	1.65
41869578--41869733	61	2.5	61	89	3	233	42	19	2	34	1.65
41874727--41874774	21	2.2	21	82	10	53	29	12	0	58	1.35
41874931--41874963	17	2.0	16	94	5	57	54	0	0	45	0.99
41875020--41875101	26	3.2	26	91	0	128	50	19	18	12	1.78
41876683--41876760	38	2.1	38	100	0	156	46	10	12	30	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135