genome.fa.s10.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  104  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35712992--35713016	10	2.5	10	100	0	50	40	0	28	32	1.57
35718209--35718236	10	2.8	10	100	0	56	50	10	0	39	1.37
35722881--35722937	18	3.2	18	72	22	57	61	0	5	33	1.18
35725497--35725535	20	2.0	20	85	10	53	51	2	7	38	1.44
35725542--35725629	25	3.4	25	71	22	67	70	7	2	19	1.23
35725542--35725629	27	3.4	25	71	19	74	70	7	2	19	1.23
35726210--35726245	18	2.1	18	89	5	56	13	11	13	61	1.58
35736442--35736495	21	2.6	21	81	0	63	37	22	12	27	1.91
35741718--35741793	21	3.7	20	71	18	57	32	28	11	26	1.92
35746069--35746103	6	5.8	6	93	0	52	28	2	54	14	1.54
35746286--35746389	45	2.3	45	91	0	163	30	10	28	29	1.90
35747803--35747978	37	4.8	37	87	0	244	14	15	31	37	1.89
35747826--35747930	21	5.5	21	63	21	68	13	17	33	36	1.88
35751629--35751795	37	4.6	37	84	1	212	13	15	31	39	1.87
35755404--35755531	37	3.5	37	90	2	195	15	18	28	36	1.92
35755425--35755552	21	6.6	21	69	20	80	13	18	32	35	1.90
35756560--35756603	22	2.0	22	90	0	70	18	27	20	34	1.96
35756565--35756614	22	2.3	22	89	0	73	22	28	20	30	1.98
35773146--35773190	15	3.2	15	78	18	51	62	0	35	2	1.08
35773583--35773622	17	2.4	17	91	0	71	15	17	12	55	1.70
35778577--35778606	15	2.0	15	93	0	51	20	10	33	36	1.86
35790411--35790465	22	2.5	22	87	0	74	32	20	27	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35791473--35791561	21	4.5	21	69	18	73	37	33	19	10	1.85
35791494--35791621	37	3.5	37	90	2	195	36	28	18	15	1.92
35791531--35791594	21	3.3	21	68	20	66	34	29	20	15	1.94
35795247--35795393	37	4.0	37	83	4	181	39	31	14	13	1.86
35795229--35795395	74	2.3	74	86	4	232	38	31	15	13	1.87
35799069--35799211	37	3.9	37	86	7	195	36	33	16	13	1.88
35807366--35807419	21	2.6	21	81	0	63	37	22	12	27	1.91
35812642--35812717	21	3.7	20	71	18	57	32	28	11	26	1.92
35816993--35817027	6	5.8	6	93	0	52	28	2	54	14	1.54
35817210--35817313	45	2.3	45	91	0	163	30	10	28	29	1.90
35818445--35818516	35	2.1	35	84	2	92	37	11	9	41	1.74
35818466--35818668	55	3.7	55	88	0	309	34	10	11	42	1.77
35819353--35819759	162	2.5	160	87	2	575	38	19	11	30	1.87
35826686--35826738	21	2.5	21	96	0	97	24	22	1	50	1.59
35827547--35827578	3	10.7	3	93	0	55	3	0	28	68	1.04
35827904--35827945	19	2.2	19	87	8	59	23	2	0	73	0.94
35831452--35831492	18	2.3	18	86	0	55	12	0	29	58	1.34
35834180--35834313	4	33.5	4	90	0	196	25	3	26	44	1.71
35835600--35835764	72	2.3	72	91	0	276	33	12	12	41	1.80
35836848--35836922	27	2.8	26	75	11	80	33	17	30	18	1.94
35845299--35845329	15	2.1	15	93	0	53	29	0	3	67	1.06
35850293--35850401	37	3.0	38	85	4	136	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35850293--35850402	18	6.1	18	71	12	82	25	20	27	27	1.99
35857194--35857252	24	2.5	24	85	0	82	47	11	15	25	1.79
35857206--35857256	24	2.1	24	96	0	93	56	9	11	21	1.63
35877102--35877134	6	5.5	6	100	0	66	33	15	33	18	1.92
35878140--35878175	5	7.2	5	100	0	72	19	0	0	80	0.71
35881649--35881694	25	1.9	25	86	8	69	34	4	6	54	1.46
35883495--35883639	49	3.0	49	87	0	191	25	15	18	40	1.89
35883847--35883899	3	17.7	3	96	0	97	32	0	0	67	0.91
35884203--35884246	21	2.1	21	82	0	52	40	15	6	36	1.74
35889189--35889226	8	4.6	8	90	3	58	39	0	0	60	0.97
35889172--35889328	82	1.9	82	83	6	201	50	2	1	45	1.23
35889818--35889846	14	2.1	14	93	6	51	31	6	0	62	1.22
35890550--35890588	18	2.1	18	85	9	51	69	0	0	30	0.89
35890547--35890588	17	2.5	17	88	7	59	69	0	0	30	0.89
35893972--35894084	52	2.1	55	83	8	153	30	17	7	45	1.75
35897734--35897801	34	2.0	34	97	0	127	52	13	7	26	1.66
35897735--35897789	17	3.2	17	66	19	51	52	10	7	29	1.63
35902169--35902210	15	2.7	16	79	17	52	47	2	0	50	1.14
35907298--35907813	146	3.5	147	81	9	618	44	3	7	44	1.48
35907648--35907704	25	2.5	21	74	20	51	45	1	5	47	1.35
35908361--35908402	21	2.0	21	85	0	57	23	9	0	66	1.21
35910855--35910893	20	2.0	20	84	0	51	41	5	2	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35917312--35917363	21	2.5	21	80	0	59	25	11	28	34	1.91
35917895--35917955	14	4.4	14	74	0	59	19	18	8	54	1.68
35917909--35917968	28	2.1	28	84	0	75	23	21	6	48	1.74
35919491--35919644	30	5.1	30	80	7	161	35	4	20	38	1.73
35919491--35919644	60	2.6	60	83	2	193	35	4	20	38	1.73
35921114--35921927	40	20.6	40	76	8	702	24	18	26	30	1.98
35921114--35921927	79	10.3	79	82	5	704	24	18	26	30	1.98
35921114--35921927	158	5.2	158	83	5	801	24	18	26	30	1.98
35921907--35921947	20	2.0	20	90	9	66	36	12	21	29	1.90
35921927--35922094	40	4.2	40	87	4	250	28	15	20	35	1.93
35921927--35922093	80	2.1	80	93	0	280	28	15	20	34	1.94
35921788--35922067	140	2.0	139	83	4	350	27	15	23	33	1.95
35923392--35923456	16	4.0	16	82	11	78	0	18	1	80	0.80
35923394--35923448	9	6.6	9	81	10	64	0	18	0	81	0.68
35923392--35923457	33	2.0	33	82	5	80	0	18	1	80	0.79
35923394--35923448	25	2.2	26	93	6	96	0	18	0	81	0.68
35924462--35924614	30	5.1	29	76	7	137	36	3	20	39	1.69
35924534--35924628	29	3.2	30	79	5	104	38	4	15	41	1.67
35924462--35924628	60	2.8	60	75	5	158	38	4	18	38	1.70
35926010--35926034	4	6.2	4	100	0	50	76	24	0	0	0.80
35928495--35928951	43	10.7	43	78	4	363	39	24	15	20	1.91
35928572--35928907	127	2.6	128	80	8	369	40	25	14	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35928495--35928918	170	2.5	169	80	4	440	40	24	15	20	1.90
35928485--35928951	255	1.8	256	79	4	548	40	24	15	20	1.91
35935516--35935678	57	2.9	54	80	6	155	43	20	9	26	1.82
35939806--35940711	23	39.4	23	78	4	826	45	13	6	35	1.69
35948736--35948773	16	2.4	16	82	13	51	39	0	0	60	0.97
35948740--35948795	24	2.3	24	84	3	67	33	0	1	64	1.04
35949400--35949424	12	2.1	12	100	0	50	52	0	0	48	1.00
35962515--35962554	20	2.0	20	100	0	80	40	20	5	35	1.74
35966159--35966526	41	8.9	40	81	5	337	19	28	20	30	1.97
35966159--35966526	82	4.5	83	81	5	401	19	28	20	30	1.97
35966193--35966526	123	2.7	123	84	1	438	18	29	20	31	1.97
35973718--35974712	496	2.0	496	99	0	1954	31	9	16	43	1.79
35992790--35993185	197	2.0	197	96	0	729	38	13	15	33	1.86
36013818--36013847	12	2.4	12	94	5	51	86	0	13	0	0.57
36013802--36013844	22	2.0	22	86	9	61	79	0	16	4	0.90
36016636--36016705	7	9.9	7	78	9	70	80	0	18	1	0.80
36016640--36016682	23	1.9	22	90	4	68	76	0	23	0	0.78
36016639--36016713	36	2.1	36	85	9	100	78	0	20	1	0.82
36016637--36016714	13	5.8	13	76	14	61	79	0	19	1	0.80
36017658--36017914	50	5.2	50	70	7	141	34	15	29	19	1.93
36017693--36017919	49	4.6	50	71	9	162	33	16	30	19	1.94
36017658--36017919	99	2.6	99	84	3	330	34	15	30	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36022202--36022258	29	2.0	29	96	0	105	35	12	17	35	1.87
36037313--36037351	6	6.5	6	87	0	51	46	0	30	23	1.53
36042419--36042464	24	1.9	23	86	8	65	56	6	4	32	1.45
36053327--36053354	2	14.0	2	100	0	56	50	0	0	50	1.00
36055193--36055243	19	2.6	19	77	17	50	64	3	1	29	1.22
36060320--36060403	22	3.9	22	67	6	55	19	20	17	42	1.89
36067481--36067526	25	1.9	25	86	8	69	34	4	6	54	1.46
36068219--36068247	6	4.8	6	100	0	58	82	0	0	17	0.66
36069377--36069472	7	13.7	7	76	0	66	34	25	18	21	1.96
36069377--36069473	21	4.6	21	75	5	106	34	24	18	22	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135