genome.fa.s10.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  105  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36070769--36070803	13	2.8	12	87	8	52	25	2	0	71	1.00
36072967--36073224	6	41.0	6	79	16	174	16	5	1	75	1.08
36072977--36073136	7	23.4	7	82	15	133	15	7	0	76	1.03
36072977--36073221	7	34.4	7	74	16	107	15	6	2	75	1.09
36073155--36073224	34	2.0	35	88	2	106	17	0	4	78	0.90
36075210--36075255	25	1.9	23	86	8	65	36	4	6	52	1.47
36086448--36086492	16	2.9	15	87	9	63	8	11	2	77	1.07
36088301--36088349	21	2.3	20	86	6	62	63	0	34	2	1.06
36088768--36088803	17	2.1	18	94	5	65	16	11	11	61	1.57
36095363--36096083	23	31.0	23	87	4	973	46	14	5	34	1.67
36095826--36095888	31	2.0	31	93	0	108	42	15	6	34	1.73
36097478--36097535	23	2.5	23	100	0	116	29	22	13	34	1.93
36100435--36100528	48	2.0	48	91	4	154	45	8	15	29	1.76
36119715--36119761	23	2.0	23	83	0	58	21	19	2	57	1.51
36121511--36121564	20	2.7	20	82	5	56	29	27	9	33	1.88
36124624--36124662	20	2.0	20	84	0	51	30	23	10	35	1.88
36124863--36124918	20	2.8	20	78	5	60	33	26	7	32	1.84
36127027--36127153	27	4.6	28	79	6	89	30	26	15	26	1.96
36127050--36127461	28	14.7	27	71	12	183	28	23	16	31	1.96
36127076--36127233	81	1.9	82	85	1	219	25	24	17	32	1.97
36127157--36127290	57	2.3	58	79	7	148	27	21	17	33	1.96
36138747--36138784	18	2.1	18	95	0	67	15	10	13	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36143373--36143724	171	2.1	171	94	0	614	29	23	16	31	1.96
36144156--36144180	10	2.5	10	100	0	50	56	0	0	44	0.99
36144394--36144427	16	2.1	16	88	0	50	41	0	32	26	1.56
36147335--36147367	10	3.3	10	100	0	66	48	0	9	42	1.35
36152842--36152879	19	2.0	19	94	0	67	15	7	31	44	1.75
36158952--36159007	21	2.7	21	80	0	58	30	21	12	35	1.90
36159707--36159893	51	3.6	51	86	2	232	28	24	14	32	1.94
36166943--36167129	51	3.6	51	86	2	232	28	24	14	32	1.94
36167951--36167980	2	15.0	2	92	0	51	50	3	0	46	1.18
36170909--36170957	13	3.5	13	79	15	62	2	24	24	48	1.61
36170899--36170972	29	2.6	29	95	0	130	6	22	21	48	1.73
36170899--36170972	16	5.0	15	73	18	66	6	22	21	48	1.73
36172497--36172545	23	2.1	23	100	0	98	18	22	24	34	1.96
36173892--36173946	3	18.3	3	88	7	85	70	0	0	29	0.87
36175007--36175046	20	2.0	20	90	0	62	35	20	25	20	1.96
36175074--36175122	21	2.3	21	96	0	89	10	8	34	46	1.67
36182067--36182117	22	2.3	21	80	12	57	41	3	0	54	1.19
36186393--36186447	26	2.1	26	93	0	92	38	25	27	9	1.86
36186400--36186522	22	5.4	22	83	3	129	42	25	21	10	1.85
36186399--36186457	26	2.2	26	84	6	73	44	25	22	8	1.81
36191185--36191263	31	2.5	31	82	8	97	46	11	15	26	1.79
36192315--36192385	20	3.7	20	86	5	92	40	0	4	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36198918--36199204	140	2.1	138	86	4	389	24	11	11	52	1.71
36198951--36199280	140	2.4	137	81	7	353	26	9	10	53	1.66
36202371--36202403	14	2.3	15	89	5	50	36	0	12	51	1.39
36204025--36204183	28	5.7	28	87	2	194	26	11	25	36	1.91
36204198--36204262	26	2.5	26	94	2	112	18	23	26	32	1.97
36206943--36206996	24	2.3	24	81	9	58	55	7	1	35	1.39
36208035--36208110	11	6.8	11	71	21	52	52	1	1	44	1.17
36208035--36208110	25	3.1	25	73	7	84	52	1	1	44	1.17
36212189--36212245	6	10.0	6	75	17	59	43	1	0	54	1.10
36212189--36212261	17	4.3	17	87	5	94	45	2	0	52	1.15
36214097--36214350	30	8.6	30	83	7	272	38	24	1	35	1.63
36214099--36214354	59	4.3	58	84	5	309	38	25	1	35	1.64
36214097--36214354	89	2.9	88	87	3	349	38	25	1	35	1.64
36214453--36214528	28	2.7	28	91	0	125	34	26	6	32	1.82
36215607--36215819	109	2.0	109	99	0	417	28	11	16	43	1.83
36225809--36225842	17	2.0	16	88	11	50	82	0	17	0	0.67
36225899--36225943	21	2.1	21	95	0	81	40	31	24	4	1.75
36226877--36227628	201	3.8	200	90	1	1143	34	19	22	22	1.96
36227492--36227750	115	2.3	115	90	0	392	35	21	22	21	1.96
36227609--36227909	159	1.9	161	87	2	444	35	19	22	21	1.96
36227772--36228017	115	2.2	113	85	2	325	34	20	21	22	1.96
36227450--36228017	274	2.1	276	90	2	890	35	20	22	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36228475--36228552	6	13.0	6	76	12	72	41	1	1	56	1.15
36228475--36228574	11	8.6	11	73	18	62	43	2	1	54	1.18
36228475--36228560	38	2.4	37	75	18	74	40	1	1	56	1.14
36228475--36228552	39	2.0	39	87	5	113	41	1	1	56	1.15
36228475--36228552	17	4.4	17	83	12	86	41	1	1	56	1.15
36228509--36228570	22	2.8	22	82	2	70	45	3	0	51	1.17
36229135--36229372	29	8.1	30	84	12	282	37	28	0	33	1.63
36229130--36229368	59	4.0	59	85	8	308	37	26	1	34	1.65
36229130--36229374	88	2.8	87	87	4	359	37	27	1	34	1.65
36229469--36229558	28	3.2	28	85	0	117	34	27	7	30	1.85
36230668--36230772	52	2.0	52	83	0	129	34	9	25	30	1.88
36231077--36231127	16	3.1	16	75	10	50	45	0	1	52	1.12
36232633--36232731	36	2.8	36	90	3	155	23	23	18	35	1.96
36237521--36237558	15	2.5	15	83	12	51	60	0	0	39	0.97
36237708--36237736	7	4.1	7	100	0	58	13	0	27	58	1.36
36237695--36237736	21	2.0	21	81	9	50	19	0	28	52	1.46
36247503--36247583	24	3.4	24	91	0	126	27	13	6	53	1.63
36250566--36250632	25	2.7	24	76	4	62	40	2	4	52	1.37
36250757--36250811	28	2.0	28	88	0	83	56	14	9	20	1.65
36255708--36255992	52	5.5	52	94	1	486	31	23	16	27	1.96
36265257--36265321	19	3.4	18	83	12	60	47	9	1	41	1.45
36279737--36279775	18	2.3	16	86	8	51	35	5	0	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36294399--36294423	10	2.5	10	100	0	50	64	0	16	20	1.30
36297660--36297698	11	3.2	12	85	10	53	0	28	2	69	1.02
36300893--36300967	33	2.3	33	97	0	141	32	24	17	26	1.97
36306897--36306949	20	2.7	19	85	8	63	39	1	1	56	1.21
36320058--36320107	12	4.3	11	80	19	57	76	0	22	2	0.89
36320060--36320114	17	2.9	18	78	13	58	78	0	20	1	0.85
36320060--36320115	29	1.9	29	86	13	80	78	0	19	1	0.84
36320074--36320112	12	2.9	13	85	14	53	79	0	20	0	0.73
36328233--36328422	80	2.4	80	91	1	310	37	22	15	24	1.93
36330644--36330694	21	2.4	21	74	6	50	33	25	11	29	1.91
36331590--36331778	52	3.6	51	86	4	234	40	23	10	25	1.86
36334766--36334854	25	3.6	25	75	14	85	26	16	22	33	1.96
36339397--36339670	80	3.4	80	83	5	302	22	17	24	35	1.95
36341888--36341930	18	2.4	17	81	11	50	67	2	9	20	1.30
36343639--36343805	51	3.3	51	75	14	191	28	22	17	31	1.97
36343627--36343932	100	3.1	99	87	5	411	25	20	18	35	1.95
36343682--36343932	50	5.0	51	71	15	184	25	19	19	35	1.96
36346147--36346205	24	2.5	24	86	2	93	25	3	8	62	1.39
36346404--36346449	23	1.9	25	91	8	78	26	4	2	67	1.21
36355318--36355364	20	2.3	21	85	10	62	10	14	2	72	1.21
36357621--36357664	18	2.5	18	81	3	54	15	11	13	59	1.62
36370737--36370786	12	4.2	12	77	10	57	62	0	36	2	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36371838--36371871	17	2.1	16	88	5	50	76	0	14	8	1.01
36376187--36376575	194	2.0	194	96	0	715	22	26	15	35	1.94
36380663--36380719	27	2.1	27	100	0	114	43	17	7	31	1.76
36380929--36380973	18	2.6	18	85	3	56	55	11	11	22	1.66
36389018--36389051	18	1.9	18	88	5	52	70	0	8	20	1.13
36402356--36402450	41	2.3	41	96	0	172	35	29	6	28	1.82
36402441--36402479	17	2.3	17	86	0	51	48	25	12	12	1.77
36435928--36435975	6	8.3	6	86	4	64	79	2	2	16	0.93
36435896--36435975	22	3.3	23	75	23	76	73	2	3	20	1.10
36449450--36449475	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135