genome.fa.s10.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  27  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10839402--10839463	16	3.9	16	78	0	61	58	3	9	29	1.46
10848415--10848535	23	5.2	23	82	11	156	11	25	23	39	1.88
10848415--10848535	48	2.6	46	87	7	172	11	25	23	39	1.88
10848500--10848574	39	1.9	39	91	0	123	12	22	21	44	1.85
10848534--10848627	23	4.0	23	76	16	95	11	24	19	44	1.84
10854867--10854987	23	5.2	23	82	11	156	11	25	23	39	1.88
10854867--10854987	48	2.6	46	87	7	172	11	25	23	39	1.88
10854952--10855026	39	1.9	39	91	0	123	12	22	21	44	1.85
10854986--10855079	23	4.0	23	76	16	95	11	24	19	44	1.84
10857143--10857188	19	2.3	20	85	3	58	71	4	17	6	1.24
10858721--10858776	27	2.1	27	83	12	71	53	3	1	41	1.29
10858713--10858768	19	2.9	19	84	7	69	55	3	1	39	1.28
10861049--10861091	19	2.1	21	83	8	54	44	4	4	46	1.45
10868210--10868279	18	3.9	18	87	7	106	40	10	11	38	1.75
10868711--10869108	72	5.6	72	93	0	665	22	6	15	55	1.62
10868714--10869108	143	2.8	144	94	1	695	22	6	15	55	1.62
10868711--10869108	215	1.9	215	92	1	672	22	6	15	55	1.62
10870807--10870847	13	3.1	13	82	6	55	48	0	0	51	1.00
10870808--10870934	8	16.8	8	65	22	60	48	2	0	48	1.20
10870808--10870917	32	3.7	31	75	15	83	49	1	0	48	1.18
10870997--10871174	88	2.0	88	100	0	356	37	12	9	41	1.75
10871237--10871261	13	1.9	13	100	0	50	40	16	4	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10871636--10871690	23	2.2	24	81	15	60	70	7	7	14	1.31
10874393--10874426	2	17.0	2	100	0	68	0	50	0	50	1.00
10883809--10883841	17	1.9	18	88	11	52	42	9	0	48	1.35
10884591--10884625	12	2.9	12	86	0	52	48	17	20	14	1.81
10892348--10892390	21	2.0	21	82	8	52	34	32	6	25	1.83
10892436--10892492	21	2.5	24	86	8	75	38	28	5	28	1.78
10892635--10892714	39	2.1	39	100	0	160	43	17	10	28	1.81
10904608--10904648	21	2.0	21	85	0	55	29	4	9	56	1.53
10910548--10910572	5	5.0	5	100	0	50	20	40	0	40	1.52
10912151--10912218	6	11.3	6	80	12	77	42	1	1	54	1.18
10912142--10912215	17	4.6	16	83	11	89	39	1	1	58	1.15
10912328--10912375	14	3.6	14	77	8	55	35	29	12	22	1.91
10914063--10914290	30	7.6	30	85	4	291	38	24	2	35	1.68
10914247--10914503	59	4.4	59	85	2	347	31	28	5	34	1.79
10914129--10914464	30	11.4	29	68	13	113	34	26	3	34	1.75
10914247--10914503	117	2.2	117	90	2	390	31	28	5	34	1.79
10914276--10914428	29	5.2	29	69	10	105	33	26	5	34	1.79
10915668--10915719	27	2.0	26	84	3	68	46	7	3	42	1.51
10916915--10916974	27	2.2	27	88	5	86	20	20	16	43	1.88
10917274--10917340	27	2.5	27	92	0	116	23	20	16	38	1.92
10921548--10921592	20	2.3	20	81	11	58	13	6	2	77	1.05
10921569--10921610	19	2.2	19	83	8	50	16	4	4	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10921960--10921998	21	2.0	20	85	14	55	41	5	7	46	1.55
10922798--10922822	11	2.3	11	100	0	50	76	0	0	24	0.80
10923341--10923374	10	3.3	10	84	8	50	70	2	0	26	1.01
10945273--10945326	19	2.9	19	75	10	58	61	1	5	31	1.30
10957386--10957410	13	1.9	13	100	0	50	24	4	0	72	1.02
10957460--10957497	5	7.6	5	82	11	51	21	0	2	76	0.91
10957457--10957497	9	4.2	10	85	11	50	21	0	2	75	0.92
10964808--10964848	2	20.5	2	100	0	82	0	48	0	51	1.00
10968694--10968757	29	2.2	28	83	8	83	32	17	14	35	1.89
10968877--10968909	15	2.2	15	94	0	57	45	30	0	24	1.53
10978218--10978263	25	1.9	23	91	8	74	47	0	0	52	1.00
10979041--10979074	11	3.2	11	95	4	61	29	0	26	44	1.55
10979560--10979600	19	2.2	19	86	4	57	39	0	12	48	1.41
10982611--10982644	14	2.4	14	95	0	59	35	20	2	41	1.68
10984019--10984074	23	2.3	23	79	14	60	50	1	0	48	1.11
10990784--10990808	6	4.2	6	100	0	50	52	32	0	16	1.44
10992181--10992225	24	1.9	23	86	4	63	68	0	8	22	1.16
10997444--10997483	18	2.2	18	100	0	80	12	17	55	15	1.70
10998947--10999003	26	2.2	24	77	17	60	40	1	5	52	1.34
11000466--11000515	23	2.3	21	86	6	64	32	0	2	66	1.03
11004462--11004486	5	5.0	5	100	0	50	60	0	0	40	0.97
11004465--11004516	22	2.4	22	75	15	54	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11006713--11006757	21	2.1	21	100	0	90	37	31	4	26	1.76
11009220--11009259	21	1.9	21	84	0	53	45	2	2	50	1.28
11014152--11014203	6	8.7	6	91	0	86	0	17	34	48	1.48
11023115--11023218	53	1.9	55	84	5	140	46	1	9	42	1.47
11025684--11025723	21	1.9	21	84	0	53	60	5	15	20	1.53
11027794--11027836	22	2.0	22	85	0	59	62	4	13	18	1.48
11027790--11027839	22	2.4	20	78	12	55	64	4	16	16	1.44
11030847--11030891	23	2.0	23	95	0	81	8	26	22	42	1.83
11030948--11031020	26	2.8	26	89	2	101	12	23	20	43	1.85
11035172--11035205	2	17.0	2	100	0	68	50	0	0	50	1.00
11044231--11044266	2	18.0	2	100	0	72	50	0	0	50	1.00
11046545--11046595	8	6.0	8	82	8	57	31	1	0	66	1.03
11046548--11046604	8	6.3	9	84	8	55	28	1	0	70	0.98
11046546--11046604	19	3.3	18	84	9	77	30	1	0	67	1.00
11046619--11046690	20	3.7	21	77	20	84	31	0	5	62	1.18
11046619--11046690	19	3.7	19	80	9	83	31	0	5	62	1.18
11048476--11048515	21	1.9	21	89	0	62	22	20	27	30	1.98
11053410--11053476	29	2.3	29	82	5	82	32	0	13	53	1.40
11053738--11053858	38	3.0	38	78	19	154	42	8	5	42	1.58
11063008--11063050	18	2.4	18	81	18	54	53	0	23	23	1.46
11065901--11066150	133	1.9	133	91	0	410	32	24	14	28	1.94
11068423--11068506	33	2.5	33	84	7	100	9	4	17	67	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11069673--11069757	28	3.1	27	76	10	75	27	1	2	69	1.08
11069964--11069996	16	2.1	16	94	0	57	63	6	3	27	1.32
11071339--11072763	343	4.0	345	79	12	1665	26	12	19	40	1.88
11073899--11073935	18	2.1	18	100	0	74	37	0	18	43	1.51
11081069--11081218	52	3.0	48	81	7	174	50	2	2	45	1.24
11081146--11081209	12	5.3	12	75	14	60	57	0	0	42	0.98
11081732--11081942	89	2.4	90	81	8	245	36	13	9	39	1.78
11081947--11082015	21	3.4	19	77	15	75	28	0	2	68	1.04
11081992--11082091	9	11.6	9	69	18	52	31	1	2	66	1.10
11082031--11082067	20	1.9	20	94	5	67	43	0	0	56	0.99
11088693--11088766	38	1.9	38	91	5	123	45	2	16	35	1.61
11092737--11092775	15	2.6	15	87	0	51	30	7	30	30	1.85
11093336--11093360	4	6.2	4	100	0	50	24	0	0	76	0.80
11093886--11093941	28	2.0	27	86	10	78	55	10	0	33	1.35
11095426--11095465	18	2.2	18	95	0	71	45	15	7	32	1.74
11101307--11101356	22	2.3	22	78	0	55	22	10	6	62	1.48
11103837--11103902	25	2.6	25	95	0	114	56	7	1	34	1.37
11107492--11107542	16	2.9	17	71	11	50	68	3	0	27	1.07
11115216--11115295	30	2.6	32	86	8	119	48	6	15	30	1.69
11118002--11118103	49	2.1	49	83	7	127	27	29	15	27	1.96
11121018--11121045	8	3.5	8	100	0	56	35	0	0	64	0.94
11123579--11123620	14	2.8	15	86	10	59	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11123581--11123619	16	2.6	16	88	8	55	43	0	0	56	0.99
11131133--11131182	25	2.0	25	84	11	66	46	2	2	50	1.24
11131186--11131244	20	3.4	17	78	17	59	61	1	3	33	1.23
11131195--11131247	18	2.8	19	74	5	54	66	1	3	28	1.20
11136622--11136677	18	3.2	18	82	12	55	58	5	0	35	1.21
11139186--11139223	19	2.0	19	90	10	60	39	0	0	60	0.97
11139188--11139238	19	2.7	20	79	11	54	39	0	1	58	1.09
11139187--11139232	19	2.4	19	85	10	58	39	0	2	58	1.10
11142899--11142937	5	7.8	5	94	0	69	0	38	0	61	0.96
11147096--11147142	24	2.0	24	91	0	76	59	0	2	38	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135