genome.fa.s10.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  70  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23159034--23159288	89	2.8	91	85	2	302	30	21	12	35	1.91
23162847--23162873	9	3.0	9	100	0	54	33	22	22	22	1.97
23163425--23163465	13	3.0	13	89	7	55	48	9	4	36	1.58
23178313--23178377	25	2.7	25	76	4	62	41	0	1	56	1.08
23180668--23180736	25	2.8	25	78	12	79	62	1	2	33	1.19
23180687--23180727	16	2.5	17	88	7	59	65	0	2	31	1.05
23180686--23180722	9	4.3	9	80	13	51	67	0	2	29	1.04
23184362--23184545	92	2.0	92	95	0	332	23	25	8	42	1.82
23187565--23187591	13	2.1	13	100	0	54	48	7	7	37	1.59
23193397--23193453	30	1.9	30	92	0	96	36	28	15	19	1.92
23193619--23193698	27	2.9	27	76	9	88	42	27	12	17	1.85
23193619--23193701	30	2.9	28	77	8	87	42	27	12	18	1.85
23195820--23195846	11	2.5	11	100	0	54	33	0	7	59	1.25
23194943--23197512	990	2.6	990	93	0	4415	31	20	19	29	1.97
23200008--23200409	201	2.0	201	96	0	741	39	11	25	23	1.89
23206567--23207386	273	3.0	274	98	0	1579	35	14	10	39	1.81
23212706--23212735	11	2.6	12	89	10	53	0	23	0	76	0.78
23213241--23213268	4	7.0	4	100	0	56	75	0	25	0	0.81
23225166--23225218	21	2.6	20	76	8	54	32	28	15	24	1.95
23239790--23239867	31	2.6	30	88	9	115	48	11	11	28	1.74
23244099--23244138	18	2.3	18	82	4	55	37	10	5	47	1.59
23256804--23257055	29	8.5	30	75	10	198	31	3	25	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23256738--23257055	59	5.4	58	79	8	259	33	5	24	36	1.79
23258723--23258788	34	1.9	35	90	3	107	10	12	34	42	1.77
23258831--23258864	15	2.2	16	89	5	52	14	8	14	61	1.55
23258865--23258940	17	4.5	17	72	6	64	48	3	6	40	1.48
23259327--23259966	201	3.2	201	90	2	1021	22	23	19	33	1.97
23260224--23260652	50	8.6	50	72	12	247	15	26	18	39	1.90
23260237--23260643	150	2.7	150	87	3	568	14	26	18	40	1.90
23260237--23260661	100	4.3	98	73	13	301	14	26	18	40	1.89
23261905--23261939	16	2.2	16	90	10	54	0	17	0	82	0.66
23267452--23267530	26	3.0	26	81	0	77	27	18	21	31	1.97
23269083--23269110	14	2.0	14	100	0	56	21	21	35	21	1.96
23271041--23271079	20	1.9	21	84	5	53	20	17	38	23	1.93
23271272--23271347	30	2.5	30	100	0	152	25	35	26	13	1.92
23273446--23273484	20	1.9	21	94	5	71	82	0	17	0	0.68
23273449--23273498	17	2.9	17	82	5	57	78	0	22	0	0.76
23274148--23274302	44	3.4	45	89	6	179	44	12	12	29	1.80
23274225--23274296	22	3.3	22	65	7	65	41	9	12	36	1.76
23274195--23274302	44	2.5	44	100	0	216	42	14	11	31	1.81
23274745--23274818	21	3.5	21	74	7	78	10	13	37	37	1.80
23276755--23276889	43	3.1	42	92	2	216	54	18	1	25	1.53
23276788--23276817	7	4.3	7	95	0	51	66	16	0	16	1.25
23276831--23276861	7	4.4	7	91	0	53	67	16	0	16	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23276874--23277041	51	3.3	51	94	0	291	45	20	9	24	1.81
23276952--23277035	25	3.3	25	64	26	68	44	20	10	25	1.83
23277232--23277311	6	13.3	6	72	9	56	58	21	2	17	1.50
23277222--23277307	41	2.1	41	89	4	129	56	20	2	19	1.52
23277238--23277323	41	2.1	40	81	10	95	59	22	1	17	1.44
23283614--23283650	10	3.8	10	82	17	51	70	10	0	18	1.16
23283657--23283709	26	2.0	27	85	10	74	18	5	1	73	1.12
23285619--23285679	30	2.0	30	87	0	86	24	27	32	14	1.95
23287913--23288455	150	3.6	151	87	6	710	33	1	14	50	1.51
23289489--23289602	41	2.8	41	90	0	174	28	17	26	27	1.98
23291513--23291744	47	4.9	47	78	2	250	26	15	22	35	1.94
23293453--23293911	46	10.1	46	88	2	640	23	17	25	33	1.96
23316149--23316194	15	3.2	14	82	11	58	52	36	0	10	1.37
23316179--23316303	47	2.7	47	89	2	198	45	39	1	13	1.53
23316149--23316250	13	7.5	13	70	12	53	47	38	0	13	1.50
23316273--23316319	13	3.7	13	85	2	60	53	36	0	10	1.36
23316273--23316324	19	2.8	18	83	13	61	51	38	0	9	1.35
23316232--23316365	66	2.0	65	92	4	225	47	36	2	13	1.55
23317729--23317975	30	8.3	30	83	5	270	38	24	0	36	1.62
23317712--23317975	59	4.4	59	80	8	284	37	24	0	36	1.61
23330060--23330230	74	2.3	74	92	1	279	42	21	18	18	1.90
23329934--23330352	196	2.1	196	91	0	676	41	19	18	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23330130--23330526	122	3.2	121	86	2	553	41	18	18	21	1.90
23330917--23330985	16	3.6	17	72	27	59	43	5	1	49	1.35
23331474--23331503	15	1.9	16	93	6	53	63	0	0	36	0.95
23332351--23332554	30	6.9	29	81	10	216	38	27	1	31	1.68
23332351--23332554	60	3.4	58	82	4	239	38	27	1	31	1.68
23339225--23339249	12	2.1	12	100	0	50	40	16	8	36	1.77
23341421--23341458	17	2.2	17	90	0	58	44	2	0	52	1.14
23341459--23341492	15	2.2	16	94	5	61	61	17	5	14	1.52
23341453--23341493	15	2.8	15	82	17	59	60	14	7	17	1.55
23343269--23343495	29	7.7	29	76	15	123	37	25	3	32	1.75
23343343--23343510	29	5.7	30	81	4	182	37	25	4	32	1.75
23348868--23348920	21	2.5	21	73	11	54	58	3	26	11	1.49
23349385--23349425	17	2.3	18	91	4	66	17	19	14	48	1.81
23350441--23350498	26	2.2	26	93	0	98	20	20	27	31	1.98
23351086--23351141	21	2.7	20	78	8	67	44	25	8	21	1.81
23351763--23351854	36	3.0	28	73	18	85	21	27	18	32	1.97
23353725--23353762	14	2.6	15	80	19	53	44	21	0	34	1.52
23356726--23356779	27	2.0	27	100	0	108	22	29	18	29	1.97
23356755--23356851	36	2.7	36	93	0	158	24	27	14	32	1.94
23360444--23360498	28	2.0	28	92	7	94	54	3	14	27	1.57
23366284--23366310	14	1.9	14	100	0	54	51	11	0	37	1.37
23370715--23370850	67	2.0	67	95	0	245	27	18	10	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23372154--23372197	22	2.0	23	86	13	65	13	13	6	65	1.44
23375280--23375336	21	2.5	24	86	8	75	38	28	5	28	1.78
23375972--23376207	51	4.6	51	88	2	339	27	22	15	34	1.94
23384383--23384424	20	2.2	20	91	4	68	14	21	16	47	1.82
23384452--23384484	15	2.3	15	89	5	50	51	6	15	27	1.66
23386180--23386206	13	2.1	13	100	0	54	29	14	0	55	1.40
23387108--23387173	25	2.6	25	90	0	96	33	24	18	24	1.97
23387108--23387184	25	3.1	25	86	0	82	33	22	19	24	1.97
23391770--23391835	34	1.9	34	93	0	114	34	22	21	21	1.96
23393001--23393241	43	5.6	43	82	5	256	34	10	20	34	1.88
23393004--23393241	129	1.8	130	83	6	313	34	10	20	34	1.87
23400876--23400903	11	2.5	11	100	0	56	32	7	0	60	1.24
23405223--23405253	14	2.3	14	94	5	55	29	16	9	45	1.79
23407218--23407264	17	2.8	17	80	0	58	19	14	12	53	1.73
23407821--23407854	16	2.0	18	88	11	54	73	0	23	2	0.97
23407828--23407864	12	3.2	12	88	11	51	75	0	24	0	0.80
23407815--23407858	17	2.5	17	82	13	54	75	0	22	2	0.92
23407816--23407862	24	2.0	24	84	16	62	74	0	23	2	0.93
23410454--23410490	17	2.2	17	90	4	58	10	8	24	56	1.60
23416654--23416874	43	5.1	43	82	1	165	33	10	19	36	1.86
23416677--23416880	86	2.4	86	83	1	230	32	10	18	38	1.84
23433697--23433794	46	2.1	46	94	0	169	29	12	15	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23436266--23436313	20	2.4	20	93	6	80	22	10	10	56	1.63
23438332--23438441	38	3.0	38	92	6	176	30	15	7	47	1.72
23438551--23438614	27	2.4	27	89	2	94	50	6	3	40	1.43
23445993--23446040	16	2.9	16	84	3	51	50	4	2	43	1.33
23452303--23452389	31	2.9	30	81	13	106	31	4	4	59	1.38
23452603--23452689	28	3.0	30	74	6	97	50	12	14	21	1.76
23457512--23457549	16	2.5	15	91	8	60	31	0	0	68	0.90
23459777--23459821	3	15.0	3	100	0	90	33	0	0	66	0.92
23464888--23465208	158	2.0	158	87	1	464	28	23	23	23	1.99
23468307--23468356	20	2.5	20	80	9	57	38	16	0	46	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135