genome.fa.s10.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  38  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14367788--14367841	11	5.1	11	74	17	60	59	0	1	38	1.08
14373653--14373727	30	2.6	27	76	16	69	29	0	5	65	1.15
14373722--14373770	25	2.0	25	84	8	64	38	2	0	59	1.09
14378639--14378730	35	2.6	35	72	14	91	28	11	6	53	1.62
14386598--14386663	34	1.9	34	84	0	87	24	10	19	45	1.82
14386644--14386685	17	2.5	17	81	14	59	26	7	19	47	1.74
14390095--14390142	4	12.5	4	91	8	82	50	22	0	27	1.50
14397957--14397983	6	4.5	6	100	0	54	14	0	37	48	1.45
14413857--14413938	36	2.3	35	81	6	92	56	9	0	34	1.32
14414661--14414811	61	2.5	61	75	1	149	44	14	3	37	1.64
14419441--14419482	17	2.3	18	84	8	50	78	0	2	19	0.86
14419441--14419482	19	2.3	19	83	4	50	78	0	2	19	0.86
14422502--14422552	24	2.3	22	80	12	59	74	0	17	7	1.05
14422504--14422548	24	1.9	23	86	4	63	75	0	15	8	1.03
14422519--14422563	17	2.5	19	82	17	60	71	0	20	8	1.12
14422657--14422694	6	6.3	6	93	0	67	0	36	0	63	0.95
14424226--14424272	22	2.0	23	84	8	60	48	8	19	23	1.75
14433713--14433744	12	2.4	14	90	10	50	21	0	0	78	0.76
14435972--14436037	30	2.2	30	78	5	71	34	10	16	37	1.83
14442548--14442581	17	2.0	17	94	0	59	44	0	0	55	0.99
14453972--14454006	16	2.1	17	89	5	54	40	0	25	34	1.56
14454050--14454127	35	2.2	35	88	6	122	23	7	35	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14455561--14455603	22	2.0	22	85	0	59	44	4	18	32	1.71
14455621--14455654	14	2.5	14	90	4	52	41	0	0	58	0.98
14459725--14459767	12	3.6	12	93	0	77	32	32	25	9	1.88
14459725--14459773	24	2.0	24	96	0	89	30	28	28	12	1.93
14464040--14464069	13	2.3	13	94	0	51	33	0	0	66	0.92
14470083--14470124	20	2.1	20	86	8	59	19	57	2	21	1.52
14471369--14471456	18	5.4	15	66	20	52	47	1	1	50	1.16
14472396--14472484	45	2.0	45	86	4	126	33	17	17	30	1.94
14474206--14474234	14	2.0	15	93	6	51	55	0	10	34	1.34
14474249--14474313	27	2.5	24	80	20	78	53	1	6	38	1.35
14474270--14474313	14	3.2	14	81	18	65	59	0	6	34	1.24
14474249--14474313	13	5.0	13	71	14	62	53	1	6	38	1.35
14481685--14481737	27	2.0	27	92	0	88	37	15	7	39	1.75
14481812--14481838	14	1.9	14	100	0	54	74	11	7	7	1.23
14489609--14489648	18	2.2	18	86	0	53	37	2	5	55	1.35
14490218--14490275	28	2.1	28	96	0	107	27	12	13	46	1.79
14492748--14492794	22	2.1	21	84	7	58	17	23	4	55	1.59
14495143--14495324	91	2.0	90	86	9	253	46	10	2	40	1.51
14498859--14498958	35	2.8	35	83	7	114	39	15	25	21	1.91
14499447--14499808	117	3.1	117	88	0	555	26	9	28	35	1.87
14502395--14502440	25	1.9	25	86	8	69	34	4	6	54	1.46
14508864--14508921	18	3.2	18	78	4	64	51	8	12	27	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14509025--14509066	20	2.0	20	82	13	50	26	14	2	57	1.50
14520669--14520703	18	1.9	18	88	0	52	5	48	0	45	1.26
14521473--14521522	25	2.0	25	92	0	82	60	12	12	16	1.60
14525583--14525649	31	2.2	30	86	5	91	44	13	8	32	1.75
14542760--14542817	26	2.2	26	81	6	64	56	10	15	17	1.66
14562989--14563131	71	2.0	71	87	0	205	13	17	16	52	1.75
14583226--14583598	59	6.4	59	88	3	513	33	30	2	34	1.70
14583226--14583598	117	3.2	117	86	4	520	33	30	2	34	1.70
14583336--14583626	29	10.0	29	71	22	157	33	30	3	32	1.73
14583491--14583685	88	2.2	87	83	5	232	32	28	5	33	1.79
14600779--14600873	30	3.2	30	67	24	76	37	2	27	32	1.69
14600747--14600908	58	2.8	57	85	9	220	35	1	29	33	1.68
14600809--14600936	28	4.5	28	70	21	88	35	0	28	35	1.63
14602003--14602067	19	3.5	19	89	6	89	46	4	0	49	1.22
14602787--14602855	17	4.0	16	74	20	59	53	2	2	40	1.31
14602786--14602869	42	2.0	42	86	4	116	52	2	3	41	1.31
14602786--14602854	11	5.8	12	72	14	63	53	1	2	42	1.24
14602786--14602854	6	11.7	6	73	14	63	53	1	2	42	1.24
14603713--14603921	79	2.7	78	89	3	312	17	15	18	48	1.81
14604543--14604592	22	2.2	24	92	7	86	30	10	22	38	1.86
14619692--14619731	17	2.4	17	86	0	53	42	0	2	55	1.13
14619701--14619768	17	4.1	17	76	1	75	42	1	2	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14620620--14620670	22	2.3	21	83	12	59	56	1	1	39	1.22
14620638--14620662	13	1.9	13	100	0	50	56	0	0	44	0.99
14621774--14621912	29	4.7	30	77	11	135	38	20	3	36	1.70
14621774--14621908	59	2.3	58	84	6	173	38	21	3	36	1.71
14621778--14621953	30	5.9	30	77	9	123	36	23	3	35	1.72
14621876--14622159	59	4.8	58	85	3	266	33	29	2	33	1.72
14621905--14622159	59	4.4	58	87	3	359	33	29	2	33	1.72
14621905--14622153	29	8.5	30	65	21	93	34	28	2	34	1.71
14621905--14622159	117	2.2	117	87	2	361	33	29	2	33	1.72
14621971--14622142	28	5.9	28	67	17	93	33	29	2	34	1.70
14627243--14627303	29	2.0	30	84	12	81	54	3	0	42	1.17
14627234--14627323	39	2.3	38	84	7	110	52	3	0	44	1.17
14627239--14627313	9	7.9	9	74	15	53	57	4	0	38	1.18
14638575--14638946	59	6.4	59	87	3	504	33	30	2	33	1.70
14638575--14638946	116	3.2	114	85	5	496	33	30	2	33	1.70
14638606--14638974	29	12.6	29	70	22	163	33	29	2	33	1.72
14644452--14644594	71	2.0	71	87	0	205	13	17	16	52	1.75
14650740--14650784	21	2.1	21	95	0	81	51	0	4	44	1.21
14651758--14651903	30	4.9	30	78	10	138	38	15	2	43	1.62
14651758--14651891	60	2.2	59	85	7	180	39	13	2	44	1.59
14654465--14655173	59	12.1	58	79	9	629	33	3	29	33	1.76
14654547--14654638	29	3.2	28	69	22	73	38	3	29	29	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14654465--14655173	117	6.1	115	79	9	620	33	3	29	33	1.76
14655037--14655146	30	3.8	28	75	13	98	30	4	31	32	1.78
14655127--14655218	29	3.1	27	79	18	96	35	3	29	31	1.74
14656051--14656120	16	4.3	16	77	10	61	38	7	1	52	1.38
14656916--14656992	17	4.5	17	83	1	73	53	2	2	41	1.28
14656916--14656992	6	13.3	6	69	13	54	53	2	2	41	1.28
14657382--14658148	205	3.8	200	89	2	1027	21	23	20	34	1.97
14657312--14658153	200	4.2	204	88	3	1055	21	23	20	34	1.96
14670253--14670977	59	12.3	59	80	6	720	35	2	28	33	1.70
14670290--14671015	30	24.7	29	66	20	239	35	2	28	33	1.71
14670348--14670505	29	5.5	28	71	12	108	34	1	30	34	1.66
14672740--14672798	17	3.5	17	78	0	64	52	1	3	42	1.28
14683191--14683253	27	2.4	25	79	12	65	30	3	26	39	1.72
14683228--14683440	60	3.6	60	79	6	195	39	3	20	36	1.69
14683188--14683388	30	6.9	29	75	13	173	36	2	21	39	1.69
14690509--14690694	73	2.5	74	89	2	275	40	15	19	23	1.90
14692030--14692096	20	3.7	18	80	11	82	38	4	1	55	1.29
14692244--14692278	15	2.4	15	95	4	63	25	42	11	20	1.85
14694207--14694468	29	8.9	30	78	10	247	34	26	3	35	1.73
14699513--14699873	118	3.1	117	89	4	521	33	2	31	32	1.71
14699513--14699873	177	2.0	176	90	3	573	33	2	31	32	1.71
14699612--14699832	29	7.5	28	66	25	109	34	1	31	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14699518--14699873	59	6.1	58	86	6	434	33	2	31	32	1.71
14700244--14700271	5	5.6	5	100	0	56	0	21	60	17	1.36
14701619--14701694	6	13.2	6	69	13	52	51	2	1	44	1.23
14701619--14701694	17	4.4	17	81	1	89	51	2	1	44	1.23
14701619--14701682	34	1.9	33	90	3	101	50	1	1	46	1.20
14719627--14719661	1	35.0	1	88	0	52	2	94	0	2	0.37
14722069--14722132	31	2.0	33	87	6	96	60	0	4	34	1.17
14722931--14722963	3	11.0	3	93	0	57	63	0	3	33	1.10
14727401--14727429	14	2.1	14	93	6	51	48	13	6	31	1.69
14737281--14737338	29	2.0	29	96	0	107	39	27	8	24	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135