genome.fa.s10.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  101  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34655742--34655801	24	2.4	25	83	5	77	35	31	11	21	1.90
34655849--34655909	23	2.6	23	80	12	70	22	39	18	19	1.92
34660704--34660744	12	3.5	12	78	15	50	75	0	7	17	1.02
34676504--34676536	16	2.1	16	88	5	50	21	9	6	63	1.45
34687523--34687565	19	2.4	18	92	7	70	16	11	11	60	1.59
34687523--34687572	19	2.8	16	80	16	55	14	12	12	62	1.56
34688141--34688196	22	2.6	21	76	18	60	78	1	17	1	0.92
34704158--34704212	17	3.2	17	75	7	58	21	16	12	49	1.79
34707207--34707247	15	2.7	16	81	11	59	12	7	0	80	0.90
34707206--34707289	24	3.4	23	73	15	62	17	7	0	75	1.03
34709205--34709250	25	1.9	25	86	8	69	32	4	6	56	1.45
34711077--34711102	3	8.7	3	100	0	52	34	0	65	0	0.93
34713345--34713375	12	2.6	12	94	0	53	6	19	6	67	1.35
34719358--34719432	39	1.9	39	84	10	100	46	21	8	24	1.77
34720804--34720864	29	2.1	30	82	11	74	32	26	3	37	1.73
34720846--34721242	30	13.5	31	62	24	114	31	27	6	35	1.81
34720826--34721241	59	7.1	59	81	3	430	31	27	6	35	1.81
34720833--34721241	118	3.5	116	82	4	482	31	28	5	34	1.81
34720833--34721241	176	2.3	176	83	5	497	31	28	5	34	1.81
34733359--34734267	200	4.5	200	92	1	1331	36	21	22	18	1.95
34734630--34734669	17	2.4	17	87	4	55	40	2	2	55	1.27
34734625--34734669	16	2.8	16	82	3	54	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34735707--34735741	18	1.9	18	94	0	61	40	17	17	25	1.90
34736473--34736681	29	7.1	29	66	22	105	31	30	3	34	1.74
34736472--34736828	59	6.1	59	84	3	452	31	29	4	34	1.78
34736472--34736828	117	3.0	117	87	4	522	31	29	4	34	1.78
34740025--34740081	29	1.9	30	86	10	82	8	14	1	75	1.11
34745271--34745344	16	4.6	16	75	9	60	77	0	14	8	0.99
34745276--34745344	24	2.8	24	82	4	84	78	0	13	8	0.97
34745459--34745548	29	3.0	30	77	8	94	52	7	10	30	1.63
34748158--34748186	4	7.2	4	100	0	58	48	0	0	51	1.00
34760538--34760585	25	1.9	25	83	8	62	35	14	12	37	1.84
34761354--34761397	14	3.1	14	83	9	54	54	0	2	43	1.12
34761359--34761404	17	3.0	16	84	15	62	54	0	2	43	1.12
34762968--34763029	9	7.5	8	77	15	56	69	6	0	24	1.12
34762966--34763029	16	4.0	16	78	11	69	70	6	0	23	1.10
34762968--34763168	10	21.8	9	66	17	58	63	6	1	27	1.31
34768976--34769020	23	2.0	23	86	8	65	66	6	17	8	1.40
34776253--34776305	18	2.8	19	80	5	72	16	18	28	35	1.93
34781498--34781528	10	3.1	10	95	0	53	35	9	25	29	1.88
34784492--34784529	19	2.0	19	85	10	51	13	2	23	60	1.45
34789985--34790014	14	2.2	14	94	5	53	36	10	23	30	1.87
34791531--34791585	12	4.4	12	86	11	67	1	20	0	78	0.85
34791531--34791569	17	2.3	17	87	12	62	0	15	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34792314--34792361	24	2.0	24	88	8	71	4	25	8	62	1.41
34794515--34794544	15	2.0	15	93	0	51	70	6	10	13	1.34
34801998--34802084	36	2.4	36	92	0	147	22	27	19	29	1.98
34811382--34811438	30	1.9	30	85	7	80	28	12	3	56	1.52
34817064--34817162	36	2.8	36	89	1	164	24	26	15	34	1.94
34818696--34818743	25	1.9	25	95	0	87	14	8	41	35	1.76
34827357--34827384	8	3.5	8	100	0	56	10	0	0	89	0.49
34829457--34829503	24	2.0	23	83	4	58	65	2	2	29	1.15
34831233--34831268	18	2.0	18	89	10	56	61	5	0	33	1.19
34832408--34832472	30	2.2	30	85	0	85	55	15	6	23	1.62
34839996--34840076	24	3.1	27	73	22	75	37	1	4	56	1.29
34840001--34840102	49	2.1	50	83	5	127	34	1	4	58	1.30
34840135--34840205	10	7.3	10	73	10	58	38	5	1	54	1.33
34842481--34842931	29	15.3	29	74	13	289	32	5	27	34	1.79
34842614--34842735	59	2.1	58	85	1	163	39	3	24	32	1.72
34849146--34849382	91	2.6	88	77	8	226	36	16	9	36	1.82
34850733--34850763	2	15.5	2	100	0	62	48	0	0	51	1.00
34855442--34855491	19	2.6	20	76	17	52	46	0	2	52	1.12
34856394--34856465	9	7.1	10	71	18	51	58	1	1	38	1.15
34856423--34856480	9	6.2	9	75	13	55	63	3	3	29	1.27
34856422--34856457	19	1.9	18	88	5	54	61	2	2	33	1.25
34856423--34856480	28	2.1	28	90	0	89	63	3	3	29	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34859451--34859517	23	2.7	24	79	11	73	28	0	2	68	1.04
34861474--34861517	24	1.9	22	86	9	61	36	20	0	43	1.52
34866549--34866594	12	3.5	13	81	16	51	2	23	2	71	1.08
34872543--34872610	18	3.8	18	75	7	68	22	17	26	33	1.96
34881117--34881181	27	2.4	27	100	0	130	16	38	21	23	1.93
34885949--34886044	12	8.2	12	76	3	79	7	9	16	66	1.42
34885958--34886037	24	3.4	24	84	1	108	8	8	16	66	1.43
34885934--34886044	35	3.1	36	83	5	100	7	9	17	65	1.44
34885983--34886057	35	2.1	35	92	0	123	8	8	18	65	1.44
34887730--34887910	90	2.0	90	95	0	326	42	7	13	37	1.71
34898293--34898340	18	2.7	18	83	0	60	4	14	10	70	1.29
34905333--34905364	16	2.0	16	100	0	64	25	31	12	31	1.92
34904858--34905852	512	1.9	513	82	6	1221	34	17	18	29	1.94
34909925--34909955	16	1.9	16	93	0	53	67	0	12	19	1.22
34910797--34910875	37	2.1	38	83	6	99	31	15	22	30	1.95
34910811--34910883	38	2.0	37	83	5	94	31	12	23	32	1.91
34914691--34914774	34	2.5	34	84	0	105	33	33	14	19	1.91
34914735--34915120	115	3.4	115	89	0	569	37	23	14	24	1.92
34925215--34925269	23	2.4	23	90	0	92	41	18	12	27	1.86
34930476--34930521	8	5.2	8	80	19	56	47	0	0	52	1.00
34930479--34930521	9	4.8	9	83	8	52	51	0	0	48	1.00
34930597--34930631	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34930799--34930833	18	2.1	18	89	10	56	71	0	2	25	1.00
34949744--34949772	3	9.7	3	100	0	58	65	0	34	0	0.93
34950385--34950440	26	2.2	26	83	3	78	37	1	3	57	1.27
34950932--34950978	20	2.3	20	85	7	60	53	0	6	40	1.27
34950953--34951035	24	3.2	24	66	28	62	45	1	9	43	1.44
34950943--34951051	54	2.0	54	94	0	191	44	0	11	44	1.45
34951078--34951115	15	2.5	15	87	8	51	26	0	0	73	0.83
34951306--34951359	19	2.8	21	79	20	64	55	5	0	38	1.23
34951465--34951924	41	11.3	41	77	8	361	28	25	26	20	1.99
34951526--34951963	122	3.6	122	81	6	446	27	25	26	20	1.99
34951545--34951841	163	1.8	161	83	2	398	26	26	26	19	1.99
34951826--34951963	42	3.4	42	80	7	124	25	23	26	24	2.00
34952994--34953136	44	3.3	43	87	3	187	13	49	6	30	1.67
34953024--34953096	23	3.3	23	67	21	73	15	52	5	27	1.64
34955680--34955838	36	4.3	36	64	23	96	45	3	5	45	1.42
34955680--34955726	18	2.6	18	75	0	58	48	2	2	46	1.25
34955683--34955864	58	3.2	58	69	22	186	43	3	6	47	1.44
34955621--34956424	112	7.1	112	73	12	508	46	2	4	46	1.36
34955788--34956415	18	35.5	18	64	17	124	47	1	3	46	1.32
34955798--34955978	48	3.7	48	79	15	203	48	2	2	46	1.28
34955784--34956344	146	3.7	146	76	13	625	47	2	4	46	1.34
34955676--34956232	258	2.2	257	90	4	874	46	1	4	46	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34956034--34956281	49	5.1	49	95	1	435	50	0	4	45	1.24
34955776--34956393	307	2.0	303	91	5	1010	47	1	4	46	1.33
34955939--34956424	49	9.2	56	75	17	288	47	2	4	46	1.33
34955776--34956394	258	2.4	254	77	16	348	47	1	4	46	1.33
34956444--34956537	8	11.8	8	69	22	56	43	1	4	51	1.28
34962049--34962206	67	2.4	67	90	3	239	43	16	24	15	1.87
34962192--34962244	21	2.5	21	90	0	79	32	18	47	1	1.60
34962637--34962670	15	2.3	15	100	0	68	11	23	29	35	1.90
34963537--34963595	19	3.1	19	78	9	57	69	0	3	27	1.04
34964481--34964531	21	2.4	21	87	9	77	68	29	0	1	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135