genome.fa.s10.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  51  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18128469--18128519	21	2.4	22	75	18	54	31	5	9	52	1.58
18132164--18132226	26	2.4	27	84	5	76	57	1	6	34	1.34
18138505--18138567	25	2.5	25	86	2	81	25	9	4	60	1.47
18139966--18140023	24	2.4	23	85	8	71	48	1	1	48	1.22
18140029--18140094	23	3.0	22	85	10	84	57	0	1	40	1.08
18140137--18140196	25	2.6	23	82	12	61	43	1	1	53	1.20
18146588--18146677	47	1.9	47	90	0	144	32	24	16	26	1.96
18152787--18152827	22	1.9	21	95	5	73	21	14	24	39	1.91
18154670--18154708	18	2.2	17	86	9	51	20	20	5	53	1.64
18159527--18159565	17	2.3	17	90	0	60	15	12	25	46	1.81
18161467--18161623	10	16.4	9	68	16	86	61	2	1	35	1.18
18161488--18161543	28	1.9	30	82	13	73	53	0	1	44	1.11
18161807--18161880	21	3.7	20	68	24	57	28	6	2	62	1.35
18161827--18161870	22	2.0	22	83	16	56	20	9	2	68	1.28
18161900--18161967	19	3.3	21	74	14	61	30	4	2	61	1.30
18161929--18161983	11	5.2	11	77	16	53	21	5	1	70	1.16
18161847--18161964	52	2.3	51	78	10	123	29	5	3	61	1.36
18161939--18162023	19	4.4	19	73	18	68	29	2	1	67	1.11
18161805--18161994	92	2.1	91	80	8	226	28	5	2	62	1.32
18172920--18172974	21	2.7	19	78	15	56	29	12	23	34	1.92
18175272--18175332	16	3.8	16	76	16	63	3	21	3	72	1.14
18175272--18175325	18	3.1	18	81	13	76	3	20	3	72	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18175272--18175326	17	3.1	19	76	15	71	3	20	3	72	1.15
18177862--18177901	17	2.4	16	84	12	53	72	0	0	27	0.85
18177870--18177905	18	2.0	18	94	0	63	69	0	0	30	0.89
18179028--18179192	62	2.6	63	83	12	196	43	29	3	23	1.71
18179893--18179981	40	2.2	40	80	6	99	35	16	25	21	1.94
18179908--18180022	40	2.8	40	85	1	122	33	19	25	22	1.97
18179994--18180255	123	2.1	123	84	1	346	32	14	28	24	1.95
18179994--18180254	41	6.4	41	83	3	292	32	14	28	24	1.94
18185051--18185093	16	2.5	17	81	7	52	41	0	2	55	1.12
18194144--18194186	18	2.2	20	88	8	63	44	4	0	51	1.22
18207470--18207530	6	10.3	6	78	16	65	42	1	1	54	1.20
18207470--18207530	24	2.6	23	85	12	88	42	1	1	54	1.20
18207468--18207528	30	2.0	30	87	9	88	40	1	1	55	1.19
18207525--18207569	20	2.2	20	84	7	56	64	4	0	31	1.13
18209269--18209520	58	4.4	57	88	3	353	32	30	4	32	1.77
18209269--18209484	30	7.4	28	70	19	131	32	29	4	33	1.77
18209298--18209514	28	7.5	29	71	19	168	33	30	4	32	1.77
18209269--18209519	28	8.7	29	68	26	126	32	30	4	32	1.77
18219342--18219961	137	4.5	137	92	2	981	34	16	20	29	1.94
18219342--18219961	69	8.9	68	88	4	889	34	16	20	29	1.94
18219349--18219956	31	17.4	36	66	19	281	34	15	20	29	1.94
18220326--18220386	6	10.3	6	75	16	56	42	3	1	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18220317--18220384	16	4.3	16	79	9	77	39	2	1	55	1.24
18220381--18220425	20	2.2	20	84	7	56	64	4	0	31	1.13
18221898--18222264	162	2.3	161	87	5	531	25	19	15	40	1.90
18221898--18222215	162	2.0	164	92	2	534	26	17	13	41	1.87
18222307--18222522	29	7.5	28	71	18	140	33	28	3	34	1.74
18222303--18222610	58	5.3	55	82	11	309	34	28	2	34	1.73
18222303--18222610	116	2.7	112	85	9	372	34	28	2	34	1.73
18222336--18222610	30	9.5	29	70	23	163	34	28	3	33	1.74
18232794--18232943	56	2.6	58	80	11	157	24	11	10	53	1.68
18233085--18233148	31	2.1	31	91	5	103	48	7	12	31	1.69
18233093--18233162	31	2.2	32	87	5	99	48	8	15	27	1.74
18233093--18233170	31	2.5	31	82	2	93	52	8	14	24	1.69
18234473--18234513	19	2.2	19	90	0	64	31	29	21	17	1.96
18235061--18235118	29	2.0	29	89	3	89	20	43	0	36	1.52
18235848--18235885	19	2.0	19	89	0	58	36	5	21	36	1.76
18237594--18237621	2	14.0	2	100	0	56	50	0	0	50	1.00
18238944--18238983	18	2.3	18	86	4	55	52	0	0	47	1.00
18239010--18239051	10	4.3	10	81	6	50	71	0	2	26	0.98
18239008--18239051	9	4.7	9	80	8	52	68	0	2	29	1.02
18239008--18239051	19	2.3	19	80	7	54	68	0	2	29	1.02
18244313--18244359	3	15.7	3	90	0	76	65	0	31	2	1.04
18244821--18244861	15	2.5	17	88	11	59	53	4	2	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18244868--18245214	186	1.9	187	88	0	534	38	15	15	29	1.89
18250215--18250261	24	2.0	24	91	0	76	25	12	6	55	1.61
18250223--18250277	24	2.3	24	83	0	65	29	14	7	49	1.70
18252208--18252269	24	2.6	24	86	0	88	24	16	11	48	1.78
18256973--18257102	61	2.2	61	95	2	237	38	30	5	26	1.78
18261658--18261684	2	13.5	2	100	0	54	51	0	48	0	1.00
18268004--18268041	19	2.0	19	100	0	76	31	26	5	36	1.79
18268005--18268049	19	2.4	19	92	0	72	31	24	8	35	1.86
18268801--18268843	19	2.3	18	81	14	52	48	20	2	27	1.62
18271654--18272458	400	2.0	400	97	0	1504	33	26	10	29	1.90
18276682--18276876	10	20.1	9	68	19	83	58	3	2	35	1.29
18276683--18276793	9	11.7	10	67	20	60	61	2	0	36	1.10
18276683--18276775	36	2.5	35	81	13	100	62	3	0	34	1.11
18276881--18276913	17	1.9	17	93	0	57	63	6	6	24	1.40
18277383--18277503	56	2.2	55	82	10	140	40	9	13	37	1.76
18277940--18277974	2	17.5	2	100	0	70	51	48	0	0	1.00
18288798--18288822	2	12.5	2	100	0	50	52	0	0	48	1.00
18290203--18290235	16	2.1	16	88	5	50	45	0	0	54	0.99
18291799--18291834	12	2.8	12	91	8	54	66	5	13	13	1.41
18294809--18295056	30	8.4	29	76	10	166	42	3	18	35	1.67
18294809--18295056	29	8.4	29	77	7	162	42	3	18	35	1.67
18294809--18295048	59	4.1	56	77	10	196	42	3	17	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18297062--18297918	39	22.6	39	68	13	311	26	20	29	23	1.99
18297130--18297331	66	3.0	66	84	2	181	26	22	29	22	1.99
18297352--18297823	117	4.0	117	74	11	412	26	20	29	23	1.98
18297352--18297920	78	7.3	75	77	9	414	26	20	30	23	1.98
18297486--18297920	233	1.9	234	84	2	597	26	19	30	23	1.98
18297636--18297927	155	1.9	154	81	4	338	27	19	29	22	1.98
18298169--18298447	49	5.7	49	73	7	197	17	29	16	36	1.92
18301554--18301723	88	1.9	88	85	0	232	33	5	27	33	1.81
18301774--18301956	59	3.1	58	82	6	199	39	3	19	38	1.68
18301738--18301934	30	6.7	29	73	15	113	38	2	23	36	1.67
18301503--18301995	29	16.7	30	71	13	226	35	5	23	34	1.79
18303110--18303175	13	5.2	13	80	5	55	30	1	3	65	1.17
18303110--18303175	3	21.0	3	72	9	51	30	1	3	65	1.17
18303821--18303862	18	2.4	18	84	4	59	61	9	0	28	1.27
18303821--18303869	18	2.7	18	81	6	55	61	12	0	26	1.31
18309422--18309449	11	2.5	11	100	0	56	50	25	10	14	1.75
18310959--18311250	30	9.8	30	78	9	233	40	2	20	36	1.66
18310887--18311239	89	3.9	87	77	11	304	40	2	20	36	1.66
18310937--18311248	59	5.3	59	80	6	299	39	2	21	36	1.67
18312086--18312181	49	2.0	49	85	4	131	55	4	9	31	1.51
18312430--18312459	13	2.3	13	94	0	51	30	13	46	10	1.75
18315845--18315878	15	2.2	16	89	5	52	52	5	5	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18332048--18332102	25	2.2	26	86	3	76	21	7	1	69	1.23
18333490--18333531	17	2.5	17	88	0	66	33	0	2	64	1.07
18333491--18333537	17	2.7	17	83	9	60	31	2	2	63	1.18
18339304--18339336	14	2.4	14	85	14	50	24	12	36	27	1.91
18342073--18342115	21	2.0	21	100	0	86	34	4	23	37	1.76
18347579--18347694	60	1.9	59	83	8	146	48	10	16	25	1.77
18357109--18357226	41	2.9	40	87	5	173	33	19	10	37	1.85
18357108--18357292	42	4.5	43	85	5	186	29	23	11	34	1.91
18360819--18361003	52	3.6	51	86	4	237	25	16	22	34	1.95
18364896--18365158	41	6.4	41	92	1	357	38	12	23	26	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135