genome.fa.s10.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  45  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16488719--16488761	15	2.8	15	82	10	52	67	0	2	30	1.03
16491833--16491857	2	12.5	2	100	0	50	48	0	0	52	1.00
16491898--16491955	31	1.9	30	85	3	80	27	15	6	50	1.70
16505434--16505463	15	2.0	15	93	0	51	36	6	20	36	1.79
16508294--16508330	3	12.3	3	100	0	74	67	0	0	32	0.91
16509851--16509911	30	2.0	30	93	6	106	42	19	11	26	1.85
16511248--16511292	24	1.9	23	90	4	72	57	2	6	33	1.37
16516072--16516118	23	2.0	23	100	0	94	36	17	0	46	1.48
16533918--16534005	28	3.1	28	78	4	79	67	1	0	31	0.99
16544738--16544797	27	2.4	25	78	13	68	36	25	16	21	1.94
16554522--16554801	30	9.5	29	74	12	155	36	4	24	35	1.75
16554521--16554748	89	2.5	88	79	11	232	37	3	25	33	1.74
16554487--16554801	59	5.3	58	78	8	248	35	5	24	34	1.78
16554619--16554792	89	2.0	87	85	6	235	35	4	24	36	1.75
16554621--16554801	29	6.1	29	76	10	120	33	3	24	38	1.74
16556329--16556367	12	3.0	13	85	11	53	2	25	15	56	1.52
16556673--16556744	17	4.3	16	79	10	90	52	4	1	41	1.29
16556775--16557290	242	2.1	244	87	2	752	40	12	10	37	1.77
16558811--16558869	24	2.6	22	75	12	66	11	5	69	13	1.34
16558957--16559039	33	2.5	33	84	0	103	15	4	66	13	1.41
16567419--16567454	16	2.2	17	90	9	58	19	22	0	58	1.40
16582706--16582743	3	13.0	3	83	5	51	28	0	2	68	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16588149--16588269	6	20.7	6	71	17	85	42	2	4	51	1.34
16588149--16588269	11	10.3	12	73	16	85	42	2	4	51	1.34
16588149--16588278	17	8.1	17	70	20	84	42	2	3	51	1.32
16589082--16589137	22	2.6	22	83	8	71	41	1	5	51	1.35
16590162--16590308	30	5.0	29	67	21	81	34	29	2	34	1.69
16590159--16590502	58	5.9	59	80	4	311	32	31	2	32	1.73
16590162--16590514	59	6.0	58	81	5	329	32	31	2	33	1.73
16590202--16590502	117	2.6	117	80	4	360	33	31	2	32	1.72
16590297--16590449	29	5.2	30	67	21	76	30	33	3	32	1.76
16591025--16591303	153	1.8	153	92	0	468	31	18	15	34	1.92
16591025--16591335	153	2.0	152	88	3	455	32	18	14	34	1.91
16595294--16595330	5	7.4	5	93	0	65	56	0	43	0	0.99
16597136--16597188	28	1.9	28	85	11	74	43	11	3	41	1.58
16599384--16599440	26	2.1	27	84	12	73	28	10	5	56	1.55
16601303--16601340	11	3.5	11	88	0	58	60	10	10	18	1.57
16601296--16601338	22	2.0	22	85	0	59	60	11	9	18	1.57
16632149--16632193	23	1.9	24	90	4	74	55	2	0	42	1.12
16632562--16632594	16	2.0	17	88	5	50	63	12	3	21	1.41
16640723--16640784	17	3.6	17	82	2	79	37	0	6	56	1.25
16640722--16640775	28	1.9	28	85	7	74	33	0	7	59	1.25
16642514--16643036	29	17.9	29	75	12	369	35	25	5	33	1.80
16642509--16643033	88	6.0	88	77	9	395	35	25	5	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16642548--16643091	59	9.3	59	74	9	402	34	25	6	33	1.82
16642610--16642953	116	3.0	116	88	2	494	37	25	5	31	1.79
16643016--16643096	29	2.8	30	81	5	103	28	29	11	30	1.91
16648331--16648396	5	13.8	5	78	15	61	83	0	15	1	0.72
16648332--16648417	4	22.8	4	76	18	62	82	0	15	2	0.77
16648329--16648418	16	5.7	16	77	12	96	83	0	14	2	0.74
16648312--16648417	26	3.8	29	83	13	107	81	0	13	5	0.86
16648328--16648427	9	10.9	9	73	19	82	83	0	14	3	0.77
16648329--16648417	22	3.6	25	79	13	103	83	0	14	2	0.75
16648331--16648439	21	5.2	19	76	22	87	81	0	15	2	0.80
16648328--16648426	49	2.1	47	88	7	146	83	0	13	3	0.75
16648329--16648439	15	7.3	15	75	18	95	81	0	15	2	0.79
16648330--16648417	25	3.5	25	79	17	103	82	0	14	2	0.76
16648331--16648438	36	3.0	38	84	6	118	81	0	15	2	0.80
16648328--16648426	1	99.0	1	69	0	54	83	0	13	3	0.75
16649726--16650186	210	2.2	211	84	3	590	37	17	21	23	1.94
16650604--16650643	17	2.4	17	86	0	53	37	0	7	55	1.29
16651026--16651075	22	2.3	22	85	0	64	60	18	2	20	1.46
16652487--16652742	29	8.8	29	75	9	148	35	23	5	35	1.79
16652465--16652745	58	4.8	57	75	8	201	35	23	5	34	1.78
16652492--16652922	88	4.9	85	76	10	252	34	25	7	33	1.84
16652462--16652924	117	4.0	116	79	8	401	34	25	7	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16652550--16652924	29	12.9	29	75	8	289	33	26	8	32	1.85
16662110--16662170	30	2.0	30	100	0	122	45	24	9	19	1.80
16664064--16664122	31	1.9	31	85	0	82	28	5	10	55	1.54
16669588--16669633	19	2.5	19	92	3	76	54	0	2	43	1.12
16670723--16671039	29	10.8	29	78	8	259	36	25	2	35	1.70
16671436--16671727	115	2.5	118	82	10	343	35	26	3	34	1.72
16671435--16671751	29	10.8	29	77	8	243	35	25	3	35	1.73
16671535--16671785	59	4.3	58	79	8	210	33	25	3	37	1.74
16671535--16671844	59	5.3	59	74	12	157	32	25	4	38	1.75
16684068--16684102	14	2.7	13	91	8	54	17	14	40	28	1.88
16685359--16685522	57	2.8	58	80	10	165	40	3	24	31	1.72
16685359--16685497	29	4.8	29	67	21	85	40	2	25	31	1.70
16685421--16685522	30	3.5	29	75	17	95	44	3	21	30	1.70
16685359--16685612	57	4.4	58	77	11	161	42	2	22	32	1.68
16685479--16685612	57	2.3	57	85	8	175	44	2	19	33	1.63
16685508--16685617	29	3.9	28	72	14	93	45	0	18	35	1.56
16687284--16687364	35	2.3	35	85	4	101	59	3	1	35	1.23
16687284--16687362	17	4.5	17	82	4	95	59	3	1	35	1.24
16687680--16688496	194	4.1	194	86	4	1014	23	23	17	35	1.95
16699653--16700639	412	2.4	412	88	2	1284	34	17	18	30	1.94
16700843--16701066	59	3.8	57	77	8	184	37	5	25	31	1.79
16700863--16701066	29	6.9	29	69	16	107	37	5	26	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16700961--16701297	29	11.6	29	71	17	175	42	4	24	29	1.73
16700961--16701297	58	5.8	58	78	9	305	42	4	24	29	1.73
16703178--16703235	17	3.4	17	76	4	62	55	5	3	36	1.39
16703178--16703235	18	3.3	18	76	7	57	55	5	3	36	1.39
16707360--16707562	101	2.0	101	85	0	271	24	24	15	35	1.94
16715814--16715851	15	2.4	17	82	13	53	65	0	0	34	0.93
16715859--16715886	11	2.5	11	100	0	56	53	17	0	28	1.44
16716966--16716995	15	2.1	15	93	6	53	50	10	0	40	1.36
16719748--16719790	15	2.9	15	79	6	52	32	9	0	58	1.30
16731853--16732024	24	7.4	24	80	7	212	23	27	18	30	1.97
16732422--16732461	21	2.0	20	85	5	53	37	27	0	35	1.57
16742847--16743001	51	2.9	52	77	14	154	46	2	1	49	1.23
16743069--16743173	46	2.5	43	83	13	121	37	23	6	32	1.81
16743088--16743173	46	1.9	44	88	9	129	38	23	6	31	1.81
16743155--16743226	16	4.5	16	89	0	117	27	29	5	37	1.79
16744596--16744646	20	2.5	20	93	0	84	41	1	39	17	1.61
16747718--16747773	23	2.3	24	81	6	60	19	10	5	64	1.44
16749056--16749194	30	4.7	28	71	15	86	56	2	17	24	1.52
16751596--16751629	13	2.5	13	90	4	50	76	2	20	0	0.92
16752474--16752540	13	4.7	14	77	18	68	83	0	14	1	0.72
16752474--16752541	21	3.1	21	77	12	75	83	0	14	1	0.71
16752474--16752533	7	8.9	7	78	7	70	83	0	15	1	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16753484--16753869	50	7.8	50	78	4	345	33	17	30	18	1.94
16753481--16753869	99	3.9	97	75	8	349	33	17	30	18	1.94
16753546--16753900	197	1.8	197	82	6	459	35	16	29	18	1.93
16754238--16754643	39	10.4	39	71	7	205	26	30	17	25	1.97
16754223--16754381	78	2.0	78	87	2	230	23	32	21	23	1.98
16754238--16754498	117	2.2	117	84	2	353	24	30	19	25	1.98
16754378--16754679	78	3.9	77	80	3	293	28	29	16	25	1.97
16754316--16754679	156	2.3	156	78	5	371	27	30	17	25	1.97
16754908--16755059	50	3.0	50	83	1	189	38	19	24	17	1.92
16755429--16755523	41	2.3	41	96	0	172	32	22	15	29	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135