genome.fa.s10.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  120  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39916512--39916591	36	2.1	36	88	6	115	46	15	2	36	1.59
39916527--39916598	36	2.0	36	100	0	144	44	13	2	38	1.59
39918160--39918221	24	2.6	24	84	0	88	50	11	12	25	1.74
39920150--39920212	24	2.6	24	89	0	99	50	11	14	23	1.74
39920423--39920480	11	5.0	11	77	10	53	46	1	0	51	1.11
39920811--39920864	2	27.0	2	100	0	108	50	0	0	50	1.00
39924316--39924380	30	2.1	31	86	13	91	46	20	13	20	1.84
39924521--39924584	29	2.2	28	83	8	85	56	17	9	17	1.66
39924549--39924601	22	2.4	22	90	0	88	54	16	9	18	1.69
39924760--39924789	14	2.1	14	93	0	51	30	6	0	63	1.20
39924947--39925045	47	2.1	47	83	7	121	21	6	17	55	1.63
39925155--39925225	31	2.3	31	88	11	103	21	14	21	43	1.87
39929996--39930829	167	5.0	168	81	8	852	44	19	12	22	1.84
39930134--39930804	332	2.0	326	83	9	835	45	19	12	22	1.84
39934257--39934290	16	2.1	16	88	0	50	23	0	0	76	0.79
39935106--39935155	24	2.1	24	84	0	64	44	10	2	44	1.49
39944399--39944436	21	1.9	20	89	10	60	57	7	28	5	1.49
39955405--39955470	2	33.5	2	82	8	82	50	0	4	45	1.22
39955494--39955538	2	22.5	2	100	0	90	0	48	0	51	1.00
39955538--39955581	2	22.0	2	100	0	88	50	0	0	50	1.00
39963964--39964034	36	2.0	36	94	0	124	47	8	4	39	1.53
39964838--39964873	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39969177--39969249	31	2.3	32	83	4	85	36	2	9	50	1.49
39969813--39969845	3	11.0	3	100	0	66	0	0	66	33	0.92
39971325--39971364	21	1.9	21	89	0	62	67	2	7	22	1.28
39971507--39971567	29	2.0	31	84	6	81	50	3	0	45	1.17
39971866--39971905	20	2.0	21	85	5	55	35	0	17	47	1.48
39973627--39973662	18	2.1	17	89	5	54	27	0	2	69	1.02
39979711--39979802	31	3.0	31	77	3	96	44	9	9	35	1.71
39980609--39980648	17	2.4	17	87	4	55	57	0	2	40	1.12
39981756--39981794	20	1.9	21	84	5	53	33	5	2	58	1.33
39984152--39984190	17	2.3	17	81	0	51	43	0	0	56	0.99
39984415--39984457	16	2.7	15	79	10	50	55	2	0	41	1.12
39989446--39989529	9	9.8	9	72	25	67	54	0	0	45	0.99
39989444--39989486	21	2.0	22	90	4	70	48	0	0	51	1.00
39989446--39989529	38	2.2	38	87	10	118	54	0	0	45	0.99
39989569--39989605	19	1.9	19	88	0	56	0	59	0	40	0.97
39992090--39992115	3	8.7	3	100	0	52	30	0	34	34	1.58
39993420--39993473	24	2.2	25	83	9	67	59	1	1	37	1.19
39994119--39994166	26	1.9	25	87	8	71	22	4	12	60	1.49
39994263--39994410	74	2.0	74	98	0	287	30	12	12	44	1.79
39998238--39998278	12	3.6	11	84	15	57	73	4	2	19	1.13
40005539--40005614	21	3.5	21	75	18	57	68	18	5	7	1.34
40006224--40006326	27	3.4	29	79	17	97	63	0	0	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40006281--40006326	23	1.9	23	83	16	58	63	0	0	36	0.95
40008453--40008497	22	2.0	23	95	4	83	40	4	0	55	1.20
40008496--40008529	17	1.9	18	94	5	61	67	0	0	32	0.91
40011655--40011776	44	2.8	44	89	2	192	50	9	8	32	1.64
40013176--40013230	28	2.0	28	81	0	65	21	3	9	65	1.37
40014343--40014376	17	2.1	17	88	5	52	55	0	5	38	1.24
40014382--40014461	27	3.2	24	73	13	72	53	2	2	41	1.27
40014441--40014521	31	2.7	31	83	5	96	56	1	2	39	1.20
40015273--40015335	33	2.0	31	84	9	83	49	0	1	49	1.10
40018727--40018763	17	2.2	17	90	0	56	70	2	0	27	1.01
40019058--40019099	22	1.9	22	85	0	57	30	2	7	59	1.37
40019303--40019340	14	2.7	14	91	0	67	47	5	10	36	1.61
40022897--40022932	19	1.9	18	88	5	54	72	13	5	8	1.27
40024571--40024613	18	2.4	18	84	0	50	60	6	27	4	1.43
40033313--40033371	31	1.9	31	92	0	100	35	5	10	49	1.59
40033889--40033920	6	5.3	6	100	0	64	84	0	15	0	0.63
40033892--40033924	12	2.6	13	95	4	59	84	0	15	0	0.61
40038584--40038619	16	2.2	17	90	9	58	61	2	0	36	1.11
40039154--40039186	14	2.4	14	94	0	57	33	6	3	57	1.38
40040607--40040646	18	2.2	18	86	0	53	77	0	20	2	0.88
40045401--40045440	5	7.8	5	94	5	71	82	17	0	0	0.67
40056888--40056950	27	2.2	29	83	8	76	44	0	3	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40061386--40061431	15	3.1	15	70	17	51	52	15	10	21	1.73
40062138--40062176	14	2.6	15	84	12	53	46	0	0	53	1.00
40063292--40063343	22	2.4	22	74	6	52	65	1	0	32	1.04
40065123--40065147	3	8.3	3	100	0	50	36	0	0	64	0.94
40071799--40071867	24	2.9	24	97	0	129	24	11	8	55	1.64
40076115--40076155	21	2.0	21	85	0	55	46	0	0	53	1.00
40077758--40077796	17	2.3	17	91	8	62	69	5	0	25	1.09
40084318--40084389	30	2.4	30	83	6	83	22	13	16	47	1.82
40084479--40084545	31	2.2	31	91	2	109	25	11	23	38	1.89
40088309--40088333	5	5.0	5	100	0	50	20	0	20	60	1.37
40097662--40097723	29	2.1	31	84	6	83	38	4	1	54	1.31
40103490--40103529	21	1.9	21	94	0	71	42	0	7	50	1.30
40106728--40106757	15	2.0	15	93	0	51	43	0	10	46	1.37
40109170--40109231	31	2.0	31	81	6	72	29	1	12	56	1.46
40109159--40109233	32	2.4	31	79	2	78	30	2	14	52	1.56
40115553--40115580	13	2.2	13	100	0	56	64	7	7	21	1.43
40131982--40132046	31	2.1	31	82	5	78	23	13	4	58	1.54
40132164--40132188	12	2.1	12	100	0	50	84	0	0	16	0.63
40132428--40132475	22	2.2	22	88	0	69	64	12	2	20	1.37
40132504--40132542	20	1.9	21	89	5	62	33	7	0	58	1.26
40134785--40134880	29	3.3	28	78	8	104	35	4	26	34	1.76
40134755--40134995	60	4.1	61	77	13	213	33	4	26	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40134769--40134995	30	7.6	30	79	8	182	33	5	26	34	1.79
40137216--40137242	14	1.9	14	100	0	54	40	22	0	37	1.54
40138799--40138841	19	2.3	19	84	8	52	20	9	2	67	1.30
40139289--40139332	18	2.4	19	88	11	65	40	2	4	52	1.34
40139298--40139343	18	2.7	17	80	9	58	41	2	4	52	1.33
40148565--40148626	32	2.0	32	90	3	99	32	1	12	53	1.49
40148583--40148647	31	2.2	29	83	5	76	27	3	15	53	1.56
40150839--40150902	24	2.7	24	85	0	92	23	14	9	53	1.69
40153757--40153810	18	2.9	19	72	5	56	68	3	0	27	1.06
40156786--40156823	19	2.0	19	94	0	67	50	0	5	44	1.24
40160430--40160757	181	1.8	181	83	10	438	39	0	37	22	1.59
40160792--40160828	18	2.1	18	89	0	56	27	8	13	51	1.69
40162687--40162745	31	1.9	31	89	6	93	23	6	3	66	1.32
40162682--40162749	31	2.2	29	80	16	84	25	5	2	66	1.28
40166848--40166872	13	1.9	13	100	0	50	20	0	0	80	0.72
40178439--40178472	17	2.1	17	88	5	52	38	0	0	61	0.96
40178433--40178475	22	1.9	23	90	4	70	37	0	0	62	0.95
40180113--40180335	29	7.7	28	74	15	107	35	27	2	34	1.69
40180194--40180399	29	7.2	29	77	16	171	33	29	2	34	1.72
40180410--40180470	30	2.0	30	83	0	77	34	19	4	40	1.73
40183077--40183168	6	15.5	6	69	10	64	44	2	4	48	1.34
40183077--40183168	17	5.5	17	76	8	82	44	2	4	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40185015--40185095	28	2.8	27	83	10	90	39	24	2	33	1.69
40185053--40185446	59	6.7	59	82	7	401	30	27	5	36	1.78
40185141--40185302	29	5.5	29	72	19	131	32	26	3	37	1.74
40185051--40185446	117	3.4	118	84	5	434	30	27	5	36	1.78
40185053--40185446	176	2.2	174	81	8	451	30	27	5	36	1.78
40190866--40190926	27	2.3	27	86	8	88	80	3	13	3	0.96
40192206--40192371	51	3.3	51	68	11	142	37	22	25	13	1.91
40192192--40192375	101	1.8	101	86	0	269	37	22	26	13	1.91
40192192--40192398	101	2.0	100	83	3	254	39	21	26	12	1.89
40192344--40192455	51	2.2	49	84	3	134	41	21	24	13	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135