genome.fa.s10.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  34  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13130537--13130597	33	1.9	31	83	6	77	14	11	9	63	1.51
13130769--13130986	29	7.5	28	78	8	181	37	24	4	33	1.75
13130913--13131097	29	6.3	29	72	13	94	34	25	8	31	1.85
13130857--13131076	28	7.6	29	71	14	107	36	25	5	33	1.77
13134320--13134380	29	2.1	28	82	17	72	26	8	11	54	1.64
13138052--13138106	21	2.5	20	75	13	56	45	5	3	45	1.44
13153858--13153899	22	1.9	22	90	9	68	38	2	2	57	1.25
13158310--13158334	2	12.5	2	100	0	50	52	0	0	48	1.00
13159040--13159088	25	2.0	25	87	0	71	46	4	0	48	1.20
13169634--13169693	6	10.0	6	100	0	120	16	16	50	16	1.79
13170177--13170210	18	1.9	18	88	5	52	29	0	5	64	1.17
13170303--13170355	25	2.1	25	82	6	63	60	0	0	39	0.97
13174855--13174893	6	6.5	6	96	0	69	0	0	46	53	1.00
13189313--13189358	25	1.9	25	86	8	69	32	4	6	56	1.45
13190419--13190452	14	2.5	14	85	4	52	20	5	0	73	1.04
13193342--13193415	23	3.1	22	81	14	69	13	22	21	41	1.88
13193424--13193478	22	2.5	22	90	3	83	10	23	23	41	1.86
13195879--13195920	11	3.9	10	87	12	57	19	2	0	78	0.86
13195879--13195920	5	7.8	5	89	10	57	19	2	0	78	0.86
13195879--13195919	6	7.3	6	88	5	52	17	2	0	80	0.82
13197916--13197961	25	1.9	25	86	8	69	32	4	6	56	1.45
13201585--13201685	53	1.9	53	95	0	184	31	20	17	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13211018--13211092	28	2.6	29	89	2	116	26	10	12	50	1.72
13211230--13211272	18	2.4	18	88	7	61	46	0	0	53	1.00
13229210--13229274	27	2.4	27	80	19	82	60	3	3	33	1.28
13231354--13231392	3	13.0	3	100	0	78	33	0	0	66	0.92
13234474--13234500	2	13.5	2	100	0	54	0	51	0	48	1.00
13245365--13245402	16	2.2	18	86	9	53	60	0	2	36	1.11
13245362--13245403	18	2.6	16	79	20	52	61	0	2	35	1.09
13259387--13259592	88	2.3	88	81	7	240	35	11	17	35	1.86
13268085--13268201	59	2.0	59	98	0	225	26	14	8	50	1.71
13270936--13270982	2	23.5	2	100	0	94	51	0	0	48	1.00
13274444--13274475	16	1.9	17	93	6	57	81	3	0	15	0.82
13274445--13274484	18	2.2	18	86	4	53	80	10	0	10	0.92
13274564--13274597	9	3.7	9	88	7	50	58	5	0	35	1.22
13274560--13274597	19	2.0	19	89	0	58	55	7	0	36	1.29
13275716--13275819	29	3.6	28	76	17	97	56	2	3	36	1.32
13275614--13275820	10	21.4	9	69	20	84	58	2	1	36	1.24
13275677--13275819	10	14.7	10	71	17	88	55	2	2	39	1.26
13275673--13275819	29	5.1	26	76	16	96	56	2	2	38	1.25
13276205--13276246	17	2.6	16	85	11	50	71	0	2	26	0.98
13276445--13276490	20	2.3	20	80	0	56	28	2	6	63	1.31
13280206--13280263	30	1.9	30	83	13	75	41	0	5	53	1.23
13284552--13284616	20	3.2	20	91	0	103	40	26	23	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13286463--13286521	12	5.0	12	75	6	50	71	20	3	5	1.20
13286534--13286574	14	3.1	14	75	10	50	70	19	0	9	1.14
13286569--13286630	30	2.0	32	84	9	83	64	14	6	14	1.47
13289480--13289679	102	2.0	102	94	0	355	35	21	19	25	1.96
13291386--13291458	31	2.3	31	83	6	85	43	12	8	35	1.72
13293444--13293480	2	18.5	2	94	0	65	0	0	45	54	1.00
13296370--13296423	26	2.1	25	82	6	63	33	0	7	59	1.25
13301871--13301903	17	2.0	17	88	5	50	51	3	6	39	1.42
13307907--13307944	20	1.9	19	89	5	58	65	2	0	31	1.06
13308235--13308285	19	2.7	19	78	9	59	25	1	5	66	1.24
13310027--13310069	21	2.0	21	86	8	61	44	0	0	55	0.99
13310978--13311007	13	2.3	13	94	0	51	46	13	6	33	1.69
13327524--13327548	2	12.5	2	100	0	50	52	0	0	48	1.00
13327766--13327794	2	14.5	2	100	0	58	48	0	0	51	1.00
13333063--13333271	103	2.0	103	87	4	298	55	20	2	20	1.55
13333195--13333357	86	1.9	88	88	2	249	54	22	3	20	1.58
13333814--13333859	21	2.2	20	84	3	56	63	0	26	10	1.27
13333863--13333907	21	2.2	21	84	4	56	73	0	20	6	1.05
13335968--13336212	52	4.7	51	81	5	240	33	26	13	26	1.94
13337073--13337119	22	2.2	22	85	11	62	36	10	0	53	1.36
13355170--13355212	17	2.5	17	88	3	59	53	2	23	20	1.57
13356445--13356485	16	2.5	17	80	11	59	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13356928--13356968	20	2.0	20	95	0	73	36	0	2	60	1.10
13356958--13357045	20	4.2	20	80	12	90	40	1	5	52	1.33
13367468--13367532	21	3.0	22	80	10	73	43	3	4	49	1.39
13367762--13367790	14	2.0	15	93	6	51	44	0	0	55	0.99
13387234--13387284	21	2.4	21	96	0	93	33	15	3	47	1.64
13393277--13393326	3	17.3	3	91	8	86	70	0	0	30	0.88
13394485--13394514	15	2.0	15	93	0	51	20	3	33	43	1.68
13394498--13394544	21	2.2	22	92	3	78	23	0	31	44	1.54
13397048--13397102	24	2.2	26	84	12	71	60	0	1	38	1.08
13406624--13406807	93	1.9	95	85	6	255	23	1	33	41	1.64
13406637--13406825	50	3.9	49	81	8	212	24	2	33	40	1.67
13410021--13410045	1	25.0	1	100	0	50	0	100	0	0	0.00
13427320--13427353	15	2.2	16	89	5	52	64	0	2	32	1.08
13431086--13431137	27	2.0	26	92	3	86	42	13	5	38	1.68
13433173--13433231	31	1.9	31	93	3	102	27	3	6	62	1.36
13433175--13433242	30	2.2	31	84	7	86	30	2	5	60	1.35
13433800--13433833	17	2.0	17	88	11	52	52	17	0	29	1.45
13440400--13440438	14	2.7	15	84	11	55	48	5	7	38	1.54
13442562--13442616	25	2.2	25	90	6	85	23	10	21	43	1.84
13449088--13449126	19	2.1	19	95	0	69	12	20	25	41	1.88
13449091--13449169	37	2.2	35	81	4	95	16	21	29	32	1.95
13451368--13451422	27	2.0	28	85	3	76	60	1	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13451417--13451488	36	2.0	36	89	5	110	59	5	1	33	1.29
13451732--13451845	9	12.7	9	75	13	67	28	5	1	64	1.26
13451725--13451799	29	2.6	28	81	6	80	32	4	4	60	1.34
13451684--13451792	56	1.9	58	83	7	143	26	6	5	61	1.42
13451768--13451844	17	4.4	18	71	12	61	28	6	1	63	1.27
13451970--13452046	31	2.5	31	86	0	100	25	18	11	44	1.84
13452267--13452438	60	2.9	58	81	6	179	47	9	16	25	1.78
13453525--13453573	13	3.7	13	81	5	62	61	2	0	36	1.08
13454337--13454385	13	3.4	13	75	24	53	36	0	2	61	1.08
13462091--13462625	177	3.0	177	94	0	953	19	29	14	37	1.90
13471966--13472012	21	2.3	21	85	10	62	46	0	4	48	1.21
13473870--13473922	24	2.2	24	86	6	72	43	3	0	52	1.19
13473872--13473929	24	2.5	23	83	5	64	41	3	0	55	1.17
13474495--13474545	3	17.0	3	100	0	102	66	0	0	33	0.92
13480773--13480838	19	3.3	20	79	8	64	54	6	3	36	1.41
13482613--13482656	15	2.8	16	82	10	63	72	0	0	27	0.85
13483301--13483398	8	11.8	8	68	26	53	30	1	5	63	1.23
13483300--13483385	32	2.7	31	75	16	79	29	1	5	63	1.24
13490976--13491065	45	2.0	43	82	4	108	41	0	3	55	1.16
13491310--13491368	31	1.9	31	82	6	75	32	1	5	61	1.28
13506616--13506653	20	1.9	20	88	0	58	21	23	2	52	1.59
13506884--13506923	16	2.5	16	87	0	62	40	5	0	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13513681--13513913	81	3.0	81	92	5	372	29	8	19	42	1.80
13516545--13516714	51	3.3	51	84	1	225	35	12	22	29	1.91
13524129--13524175	23	2.0	23	95	4	85	48	25	8	17	1.74
13532641--13532673	2	16.5	2	100	0	66	0	51	0	48	1.00
13534783--13534819	19	1.9	19	88	0	56	37	2	13	45	1.58
13537807--13537858	27	1.9	27	84	0	68	42	3	5	48	1.45
13538069--13538103	2	17.5	2	100	0	70	48	0	51	0	1.00
13538288--13538344	29	2.0	29	85	0	78	47	5	8	38	1.57
13540161--13540216	20	2.8	19	84	12	69	48	0	0	51	1.00
13540167--13540216	20	2.5	21	87	9	77	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135