genome.fa.s10.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  125  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41054983--41055314	89	3.7	90	79	8	320	34	20	3	42	1.69
41054983--41055402	30	14.2	30	75	6	304	33	20	4	41	1.73
41060865--41061084	30	7.4	29	80	7	185	38	1	24	35	1.66
41060865--41061100	29	8.0	29	78	8	174	36	1	26	35	1.67
41060865--41061100	59	4.0	58	73	10	176	36	1	26	35	1.67
41062341--41062380	11	3.5	11	86	6	53	47	0	0	52	1.00
41062341--41062380	12	3.5	12	90	6	57	47	0	0	52	1.00
41062654--41062916	124	2.1	124	84	0	355	25	20	14	39	1.90
41063117--41063402	78	3.7	76	80	6	274	26	18	30	25	1.98
41063231--41063655	39	10.9	38	70	8	232	24	20	30	25	1.99
41063179--41063677	78	6.4	78	79	5	359	24	19	29	25	1.99
41063295--41063661	117	3.1	116	76	4	380	25	20	29	24	1.99
41072483--41072774	30	9.9	30	82	5	301	36	2	24	35	1.70
41074012--41074063	12	4.3	12	73	9	52	48	1	3	46	1.31
41079826--41079874	20	2.5	20	86	6	64	30	4	4	61	1.33
41083777--41083825	24	2.1	24	84	3	64	48	12	8	30	1.69
41084303--41084347	22	2.0	22	82	0	54	37	6	0	55	1.26
41084582--41084648	30	2.3	28	80	10	71	58	7	2	31	1.41
41084698--41084819	60	2.0	60	100	0	244	29	9	1	59	1.39
41093861--41093893	17	2.0	17	88	5	50	60	0	0	39	0.97
41094046--41094082	19	1.9	19	88	0	56	24	2	5	67	1.25
41094051--41094089	19	2.1	19	85	4	53	28	2	2	66	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41094192--41094244	22	2.4	22	87	0	79	7	0	45	47	1.31
41094227--41094263	6	6.2	6	100	0	74	0	0	48	51	1.00
41095076--41095104	7	4.3	7	95	4	51	58	0	0	41	0.98
41097324--41097359	3	12.3	3	94	5	65	69	0	0	30	0.89
41097993--41098178	89	2.1	89	85	5	252	34	17	8	39	1.80
41098325--41098369	19	2.3	20	84	3	56	62	2	0	35	1.08
41098363--41098412	19	2.5	21	80	12	68	72	2	4	22	1.12
41098363--41098417	20	2.8	20	83	8	76	70	1	5	21	1.16
41098325--41098448	20	6.2	20	70	13	60	63	3	2	30	1.23
41098678--41098761	20	4.3	20	68	15	59	33	2	0	64	1.07
41098678--41098769	19	4.7	19	71	20	66	32	2	1	64	1.13
41103339--41103372	2	17.0	2	100	0	68	50	0	0	50	1.00
41104077--41104108	3	10.7	3	100	0	64	0	34	0	65	0.93
41112331--41112391	20	3.0	21	77	20	67	31	0	6	62	1.21
41118618--41118688	31	2.3	31	83	9	83	33	2	4	59	1.31
41129120--41129227	56	1.9	56	92	0	180	36	7	11	45	1.68
41130612--41130644	18	1.9	17	88	11	50	42	0	6	51	1.26
41131033--41131099	31	2.2	30	86	5	91	43	14	10	31	1.80
41134984--41135022	19	1.9	19	85	10	51	43	12	5	38	1.65
41146068--41146130	21	3.2	21	64	25	55	47	4	20	26	1.70
41148262--41148305	21	2.1	21	100	0	88	31	13	13	40	1.84
41151292--41151337	6	7.0	6	81	18	56	32	0	4	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41151322--41151380	30	1.9	31	89	3	93	49	0	3	47	1.18
41151679--41152035	38	9.4	38	67	20	160	32	18	16	33	1.93
41151654--41152414	76	9.8	76	82	7	776	32	18	15	33	1.93
41151654--41152414	228	3.3	226	85	5	932	32	18	15	33	1.93
41152098--41152275	93	1.9	93	97	0	338	32	19	12	35	1.90
41152019--41152352	169	2.0	170	92	0	553	32	20	13	34	1.91
41151942--41152416	245	1.9	245	90	0	754	31	19	14	34	1.92
41164081--41164367	30	9.6	29	79	7	211	36	2	23	37	1.68
41164126--41164188	31	2.0	31	88	11	94	28	1	20	49	1.58
41164402--41164773	162	2.3	162	80	6	380	42	14	18	24	1.87
41164440--41164777	162	2.1	162	83	4	423	43	12	17	26	1.84
41166265--41166332	6	11.3	6	79	17	79	52	0	2	44	1.16
41166267--41166326	31	1.9	31	93	6	104	53	0	3	43	1.17
41166265--41166332	11	6.2	11	76	22	63	52	0	2	44	1.16
41166268--41166335	17	4.2	16	83	12	95	55	0	2	41	1.15
41166624--41166662	3	13.0	3	100	0	78	66	0	0	33	0.92
41170622--41170667	19	2.4	20	75	17	53	34	0	4	60	1.16
41175921--41175979	4	14.5	4	86	10	84	22	3	0	74	0.96
41178250--41178310	22	2.8	23	85	7	74	14	11	3	70	1.28
41182804--41182837	18	1.9	17	94	5	59	5	20	0	73	1.04
41182808--41182836	15	1.9	15	100	0	58	3	20	0	75	0.94
41184144--41184190	21	2.2	21	88	7	69	68	2	0	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41184144--41184189	12	4.2	12	78	16	55	69	2	0	28	1.00
41184303--41184336	13	2.7	12	90	9	50	35	0	5	58	1.22
41186243--41186277	12	2.8	13	91	8	56	20	0	28	51	1.47
41190985--41191030	21	2.2	21	92	7	76	32	26	0	41	1.56
41201042--41201092	15	3.4	14	82	12	57	58	0	0	41	0.98
41205666--41205719	18	2.9	19	89	8	85	53	20	9	16	1.70
41206548--41206593	23	2.0	23	86	0	65	34	19	13	32	1.90
41208058--41208100	3	14.3	3	100	0	86	67	0	0	32	0.91
41208159--41208226	30	2.4	28	76	9	73	36	1	2	58	1.22
41208239--41208275	19	1.9	19	89	10	58	43	0	2	54	1.14
41208232--41208275	10	4.5	10	78	16	56	43	0	2	54	1.12
41219078--41219102	7	3.6	7	100	0	50	60	0	0	40	0.97
41222365--41222401	18	2.1	18	89	0	56	48	0	27	24	1.51
41225239--41225273	18	1.9	18	94	0	61	8	20	8	62	1.49
41243921--41244588	165	4.0	167	97	0	1236	23	26	6	43	1.78
41245918--41245956	6	6.5	6	87	0	51	46	0	30	23	1.53
41248041--41248468	110	3.9	111	78	10	412	37	14	18	29	1.91
41253498--41253548	23	2.2	23	92	0	84	21	9	19	49	1.77
41256782--41256808	3	9.0	3	100	0	54	66	0	0	33	0.92
41257643--41257679	3	12.3	3	100	0	74	64	0	35	0	0.94
41261479--41261541	32	1.9	32	83	6	81	19	6	25	49	1.71
41264247--41264289	22	2.0	22	85	0	59	34	6	6	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41289367--41289413	17	2.7	19	75	18	57	40	4	0	55	1.19
41306531--41306592	28	2.2	28	91	5	99	22	9	33	33	1.87
41306549--41306685	59	2.3	60	75	3	134	37	5	24	32	1.80
41306778--41306921	30	4.8	30	87	3	137	42	3	18	35	1.68
41306809--41306942	60	2.2	61	85	4	173	42	4	18	34	1.71
41306809--41306921	30	3.7	30	90	1	154	42	3	19	34	1.68
41309464--41309509	22	2.1	22	100	0	92	45	4	17	32	1.68
41309656--41309680	12	2.1	12	100	0	50	52	0	24	24	1.48
41311615--41311692	17	4.7	16	79	7	84	56	1	1	41	1.15
41311632--41311695	11	5.8	11	75	0	56	54	1	1	42	1.19
41311663--41311707	22	2.0	23	86	4	65	60	2	4	33	1.29
41311959--41312864	92	9.8	92	95	0	1587	33	19	15	31	1.92
41312564--41312818	52	5.4	50	64	24	158	34	18	15	31	1.92
41324096--41324525	59	7.3	59	84	3	501	35	3	28	32	1.73
41324242--41324510	29	9.1	29	66	26	95	33	2	30	32	1.73
41324286--41324438	30	5.2	30	64	20	79	35	4	26	33	1.77
41324419--41324517	30	3.3	30	72	13	96	30	2	36	31	1.69
41324806--41324869	32	2.0	33	84	9	87	60	4	12	21	1.50
41326198--41326255	6	10.2	6	78	10	68	53	0	3	43	1.17
41326189--41326252	11	5.7	11	75	14	60	50	0	3	46	1.17
41326198--41326265	17	3.9	17	90	1	100	52	1	2	42	1.25
41326672--41327082	201	2.0	200	91	1	671	18	22	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41338449--41338755	59	5.3	59	88	2	424	32	1	31	33	1.68
41338511--41338722	30	7.2	30	63	22	90	33	1	29	35	1.67
41338576--41338724	30	5.0	30	71	19	116	32	2	31	34	1.69
41338601--41338752	30	5.3	27	70	18	92	32	1	32	32	1.69
41338616--41338890	138	2.0	139	88	3	412	33	2	32	32	1.70
41338684--41338835	80	1.9	80	91	1	252	34	1	32	31	1.69
41338735--41338776	21	2.0	21	90	0	66	38	0	33	28	1.58
41338762--41338850	29	3.0	29	70	23	87	34	3	30	31	1.74
41338762--41338900	58	2.4	59	87	4	201	34	2	30	33	1.70
41340306--41340339	10	3.4	10	91	0	50	5	8	8	76	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135