genome.fa.s10.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  55  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19152475--19152561	17	5.4	16	77	12	88	42	0	1	56	1.07
19152535--19152577	16	2.6	16	85	3	50	53	0	2	44	1.13
19153274--19153322	20	2.5	20	76	6	55	65	0	2	32	1.04
19153292--19153327	14	2.6	14	86	0	54	63	0	2	33	1.08
19154442--19154896	30	15.5	27	66	22	162	32	28	3	35	1.75
19154410--19154901	59	8.4	59	85	5	642	31	29	3	35	1.75
19167077--19167429	38	9.4	38	65	22	145	32	16	18	32	1.93
19167019--19167768	226	3.3	226	88	3	1077	33	15	18	33	1.92
19167716--19167806	37	2.4	37	90	1	137	35	8	21	34	1.85
19167019--19167768	76	10.0	76	89	3	1061	33	15	18	33	1.92
19168078--19168181	11	9.0	11	72	16	77	42	1	0	54	1.17
19168078--19168181	6	18.0	6	71	21	80	42	1	0	54	1.17
19168092--19168181	17	5.5	16	85	12	121	43	2	0	54	1.12
19168092--19168181	31	2.7	32	86	10	119	43	2	0	54	1.12
19168078--19168197	17	7.3	17	80	13	117	44	1	1	52	1.21
19168891--19168942	20	2.7	19	75	21	54	63	0	1	34	1.06
19170025--19170124	29	3.5	26	73	21	85	33	27	2	38	1.68
19170022--19170390	59	6.3	59	86	2	503	32	30	2	34	1.71
19175156--19175214	13	4.4	13	77	12	50	30	1	0	67	1.00
19175400--19175635	121	2.0	121	95	0	427	55	2	8	33	1.41
19176540--19176574	6	5.8	6	96	0	61	31	31	17	20	1.95
19182363--19182428	16	4.4	16	68	26	54	34	0	10	54	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19188421--19188475	22	2.5	22	78	0	56	43	14	21	20	1.87
19191932--19191982	15	3.5	14	82	17	52	1	23	0	74	0.92
19191927--19191986	8	6.9	9	79	9	63	1	23	0	75	0.90
19194648--19194672	10	2.5	10	100	0	50	36	8	12	44	1.71
19198640--19198826	52	3.6	52	83	0	239	25	14	25	34	1.94
19198775--19198893	60	2.0	60	85	3	159	29	15	24	31	1.95
19203401--19203553	79	1.9	78	89	1	234	34	15	8	41	1.77
19209542--19209591	20	2.5	19	78	9	55	30	6	0	64	1.18
19216778--19216811	18	1.9	18	88	5	52	29	0	5	64	1.17
19218032--19218064	4	8.5	4	86	6	50	21	0	54	24	1.45
19222235--19222263	13	2.2	13	100	0	58	20	6	17	55	1.65
19225170--19225204	18	2.0	17	94	5	61	37	5	0	57	1.23
19226463--19226502	16	2.5	16	87	0	53	35	10	30	25	1.88
19226625--19226788	58	2.8	57	80	8	181	51	2	2	43	1.28
19226842--19226923	31	2.7	29	77	5	83	34	12	13	40	1.82
19240934--19240980	23	2.0	24	87	4	69	17	6	17	59	1.57
19245532--19245561	14	2.1	15	93	6	53	23	6	20	50	1.71
19251523--19251571	3	16.3	3	95	0	89	65	0	2	32	1.04
19256720--19256778	24	2.5	24	97	0	109	28	25	20	25	1.99
19271557--19271837	30	9.4	29	77	8	172	34	25	3	35	1.75
19271551--19271890	60	5.7	59	80	5	308	33	26	4	35	1.76
19271587--19271890	30	10.2	30	80	6	289	34	26	3	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19271928--19271975	22	2.1	23	84	7	62	33	2	2	62	1.18
19271942--19271987	17	2.7	17	89	0	65	41	0	0	58	0.98
19272789--19272839	16	3.1	16	83	5	66	62	1	1	33	1.17
19273963--19274300	30	11.5	29	74	6	200	36	22	4	35	1.76
19273951--19274331	59	6.4	58	76	7	243	36	23	4	35	1.74
19282434--19282705	29	9.3	29	84	2	328	40	20	2	35	1.68
19282434--19282705	59	4.6	58	87	1	346	40	20	2	35	1.68
19282435--19282750	59	5.4	59	85	4	302	38	21	3	36	1.69
19282666--19282807	59	2.4	59	83	9	166	29	21	6	42	1.77
19282721--19282864	58	2.5	59	83	7	161	30	20	5	43	1.74
19283737--19283818	29	2.8	30	81	7	98	36	29	6	28	1.81
19283737--19283816	28	2.8	28	83	5	90	36	30	6	27	1.81
19283802--19283876	29	2.6	28	78	15	82	40	24	2	33	1.69
19297873--19297919	19	2.5	19	77	19	53	65	2	12	19	1.35
19301941--19302386	195	2.3	194	83	5	544	28	19	25	26	1.98
19303907--19303951	6	7.5	6	89	0	63	22	31	0	46	1.52
19307072--19307124	23	2.2	26	83	12	69	50	3	5	39	1.44
19307719--19308217	254	2.0	254	92	0	827	42	22	10	24	1.85
19309735--19309792	27	2.1	27	83	0	71	22	31	25	20	1.98
19317358--19317417	30	2.1	29	87	6	86	26	11	11	50	1.73
19318707--19318758	11	4.7	11	77	17	63	59	1	1	36	1.19
19318845--19318874	5	6.0	5	100	0	60	40	20	20	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19321697--19321841	29	5.0	29	77	4	157	29	4	24	40	1.76
19321692--19321841	58	2.6	58	88	1	210	29	4	26	39	1.76
19321697--19321856	87	1.8	87	82	5	207	32	4	23	40	1.74
19321888--19322018	30	4.4	29	78	6	102	37	5	23	33	1.78
19321844--19321985	60	2.4	59	74	13	139	37	4	23	34	1.75
19323246--19323315	23	3.1	23	89	2	106	20	20	11	48	1.79
19326810--19326879	25	3.0	23	78	10	70	22	15	11	50	1.76
19327507--19327534	3	9.3	3	100	0	56	67	0	32	0	0.91
19327686--19327766	29	2.7	29	77	11	83	43	16	20	19	1.88
19327988--19328039	23	2.3	23	82	0	59	25	21	17	36	1.94
19336041--19336100	19	3.0	20	80	11	79	35	1	0	63	1.05
19336041--19336101	10	6.1	10	77	11	63	36	1	0	62	1.05
19338997--19339035	16	2.4	17	86	4	53	58	5	0	35	1.20
19343483--19343535	25	2.1	26	89	3	81	64	0	0	35	0.94
19344037--19344070	17	2.0	17	88	0	50	35	0	0	64	0.94
19353761--19353808	22	2.2	22	81	7	53	25	4	16	54	1.60
19353814--19353854	20	2.0	21	90	4	66	36	7	12	43	1.70
19354170--19354234	26	2.5	26	72	7	69	18	1	7	72	1.17
19354480--19354524	19	2.4	19	100	0	90	31	17	6	44	1.75
19355518--19355568	26	2.0	26	88	0	75	17	9	13	58	1.61
19361779--19361819	21	1.9	22	95	5	75	31	24	14	29	1.95
19361781--19361832	21	2.5	20	84	12	61	34	28	13	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19375987--19376525	49	11.0	49	73	5	239	39	17	23	18	1.92
19376166--19376497	148	2.2	149	81	6	372	39	17	23	19	1.92
19376264--19376448	100	1.9	99	82	4	239	40	17	23	18	1.91
19376264--19376497	99	2.4	100	80	4	251	40	17	23	18	1.91
19376019--19376500	247	2.0	245	82	3	583	40	18	23	18	1.92
19377140--19377204	34	1.9	34	93	0	112	24	1	23	50	1.58
19377205--19377242	20	1.9	20	94	0	67	36	7	13	42	1.73
19377541--19377598	16	3.6	16	86	6	73	17	1	3	77	0.99
19377894--19377920	2	13.5	2	100	0	54	48	0	0	51	1.00
19377912--19377949	20	1.9	20	84	10	51	34	2	5	57	1.35
19378007--19378057	20	2.3	23	87	12	72	27	1	9	60	1.39
19380708--19380765	26	2.2	26	96	0	107	62	12	1	24	1.39
19380980--19381054	33	2.3	33	92	0	123	28	8	37	26	1.84
19382959--19382991	17	1.9	17	88	11	50	48	3	0	48	1.17
19382963--19383013	25	2.0	27	84	7	70	54	3	0	41	1.19
19383703--19383754	27	1.9	27	88	0	77	19	25	30	25	1.98
19384631--19384663	6	5.3	6	96	3	57	63	0	3	33	1.10
19389351--19389394	23	2.0	22	86	4	61	38	0	15	45	1.47
19400313--19400356	23	2.0	22	86	4	61	38	0	15	45	1.47
19400748--19400787	7	5.7	7	100	0	80	15	55	0	30	1.41
19408615--19408665	21	2.3	21	83	10	57	66	3	25	3	1.26
19417004--19417028	11	2.3	11	100	0	50	52	0	16	32	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19417554--19417923	183	2.0	183	95	0	668	28	14	21	34	1.93
19421438--19421527	26	3.8	23	80	14	64	21	25	14	38	1.91
19424202--19424243	21	2.0	21	86	9	59	23	26	4	45	1.73
19424780--19424816	18	2.1	18	89	0	56	5	18	8	67	1.36
19424786--19424825	18	2.2	18	86	0	53	10	17	2	70	1.27
19427702--19427766	25	2.5	26	72	7	69	60	0	1	38	1.07
19427823--19427858	18	2.0	18	88	0	54	52	5	0	41	1.24
19427801--19427986	101	1.8	101	88	1	282	56	6	3	33	1.41
19434910--19434951	21	2.0	22	85	4	59	64	4	19	11	1.44
19437249--19437288	18	2.2	18	95	0	71	2	17	10	70	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135