genome.fa.s10.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  132  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42640737--42640762	12	2.2	12	100	0	52	34	23	15	26	1.94
42641976--42642012	11	3.4	11	88	0	56	54	0	0	45	1.00
42659178--42659230	25	2.0	28	86	13	78	20	3	1	73	1.08
42670607--42670637	14	2.2	14	94	0	53	45	3	6	45	1.45
42672258--42672355	33	3.0	33	89	3	135	45	12	12	29	1.78
42672496--42672576	17	4.8	17	79	11	76	35	2	7	54	1.42
42673178--42673233	27	2.1	27	87	12	80	60	1	3	33	1.24
42674260--42674686	30	14.4	30	76	11	274	36	24	3	35	1.73
42674259--42674690	59	7.3	58	77	8	365	36	24	3	35	1.73
42674317--42674786	30	15.9	29	71	13	97	36	24	3	35	1.74
42674299--42674734	59	7.4	60	75	11	230	35	25	3	35	1.74
42677374--42677701	28	11.3	29	75	8	283	36	25	4	33	1.76
42677411--42677693	58	4.9	57	78	8	263	36	25	3	34	1.74
42677392--42677689	86	3.4	86	77	7	234	35	25	4	35	1.75
42677383--42677717	29	11.6	29	72	9	161	35	25	3	34	1.75
42677724--42677858	58	2.3	58	80	8	150	33	18	5	42	1.72
42677844--42677904	28	2.1	29	88	8	90	31	31	11	26	1.91
42682710--42682867	7	22.4	7	76	20	136	81	0	17	0	0.78
42682710--42682872	43	3.9	41	81	11	163	80	0	17	1	0.81
42682710--42682851	1	142.0	1	64	0	50	81	0	16	0	0.77
42682723--42682850	6	20.8	6	78	16	104	81	0	17	0	0.79
42682710--42682852	23	6.9	20	74	18	98	81	0	17	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42683846--42684111	50	5.3	49	75	8	223	40	18	26	13	1.88
42684492--42685535	201	5.2	201	83	3	1180	35	20	21	22	1.96
42687695--42687958	30	9.1	28	75	11	196	34	26	3	35	1.73
42687695--42687944	58	4.3	57	78	8	245	35	26	3	34	1.74
42688001--42688197	87	2.3	87	82	2	236	32	25	6	34	1.82
42688035--42688194	87	1.8	86	89	1	248	31	27	6	34	1.83
42698388--42698426	15	2.6	15	83	0	60	76	0	20	2	0.90
42700184--42700559	39	9.6	39	71	9	264	23	31	19	24	1.98
42700142--42700566	78	5.4	78	86	3	534	23	31	20	25	1.98
42700142--42700566	158	2.7	156	86	4	595	23	31	20	25	1.98
42701043--42701123	17	4.7	17	80	4	83	41	2	4	50	1.37
42701041--42701109	34	2.0	34	86	10	97	37	2	5	53	1.40
42701036--42701090	6	9.3	6	76	9	51	38	0	5	56	1.23
42701036--42701090	11	4.7	12	80	11	51	38	0	5	56	1.23
42702869--42703448	30	19.8	29	73	11	264	36	26	3	33	1.73
42702951--42703458	118	4.4	115	73	10	258	36	26	3	33	1.73
42703194--42703458	29	9.2	28	77	8	132	38	27	2	31	1.71
42704803--42704896	17	5.4	17	83	9	118	43	2	1	53	1.19
42704803--42704896	36	2.7	35	83	6	120	43	2	1	53	1.19
42704803--42704881	6	13.3	6	76	12	83	41	2	1	54	1.22
42704901--42704980	27	3.0	27	75	17	85	47	23	8	20	1.77
42706783--42707069	29	9.7	30	72	17	167	37	23	2	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42706783--42707111	59	5.5	59	79	9	273	35	23	3	37	1.72
42706836--42707052	119	1.8	119	90	4	348	35	23	3	38	1.71
42706787--42707069	30	9.5	30	72	13	131	37	22	2	36	1.69
42706787--42707079	119	2.5	117	79	10	326	36	22	3	37	1.71
42709049--42709120	31	2.4	31	83	6	85	45	5	8	40	1.57
42714253--42714286	17	2.0	17	100	0	68	23	35	11	29	1.90
42720179--42720234	13	4.3	13	84	4	51	41	3	17	37	1.67
42720169--42720234	26	2.5	26	80	0	78	36	4	19	39	1.72
42720817--42720854	19	2.1	19	85	5	51	7	10	2	78	1.04
42728515--42728812	29	10.2	28	74	17	182	35	5	24	34	1.78
42728527--42728812	59	4.9	58	84	5	312	35	5	24	34	1.78
42728565--42728885	29	11.0	29	76	9	258	36	3	23	36	1.73
42748349--42748386	2	19.0	2	100	0	76	50	0	0	50	1.00
42751662--42751696	18	2.1	17	89	10	54	42	0	14	42	1.45
42751948--42752020	37	2.0	37	83	5	94	23	4	9	63	1.42
42753449--42753518	37	1.9	36	85	8	97	18	17	11	52	1.73
42753428--42753527	36	2.8	36	80	10	123	21	18	8	53	1.70
42758325--42758383	12	4.9	12	72	15	50	49	3	0	47	1.18
42762784--42762826	6	7.2	6	91	0	59	2	20	34	41	1.65
42762883--42762917	3	11.7	3	100	0	70	0	0	34	65	0.93
42772282--42772343	28	2.4	26	80	15	74	19	12	6	61	1.53
42774458--42774562	52	2.0	52	100	0	210	26	27	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42776002--42776178	59	3.0	58	76	5	169	48	14	12	24	1.78
42778078--42778138	16	3.8	16	73	0	68	54	14	1	29	1.50
42778084--42778146	32	2.0	32	83	0	81	53	17	1	26	1.52
42780932--42780957	11	2.4	11	100	0	52	46	19	7	26	1.77
42780945--42781025	29	2.7	29	81	9	83	28	13	11	46	1.77
42781191--42781257	31	2.3	27	83	14	89	40	10	10	38	1.74
42781345--42781374	11	2.6	12	94	5	53	36	0	0	63	0.95
42782426--42782453	3	9.3	3	100	0	56	0	32	0	67	0.91
42793557--42793596	11	3.5	11	83	6	53	40	0	0	60	0.97
42793595--42793661	32	2.1	32	83	10	84	38	1	0	59	1.06
42806320--42807471	573	2.0	574	97	0	2162	36	8	11	42	1.72
42823389--42823442	28	1.9	28	82	14	67	46	9	3	40	1.54
42828064--42828166	31	3.4	31	72	12	115	23	45	14	16	1.84
42828046--42828166	59	2.1	59	98	0	233	23	44	15	16	1.86
42828053--42828144	28	3.2	28	71	14	96	21	44	15	18	1.86
42828198--42828224	14	1.9	14	100	0	54	44	14	3	37	1.63
42829388--42829589	30	6.9	29	65	13	92	33	27	2	36	1.72
42829369--42829681	59	5.4	58	88	5	411	34	28	2	34	1.72
42829369--42829681	117	2.7	114	87	5	430	34	28	2	34	1.72
42829528--42829684	29	5.4	30	69	17	107	32	28	3	36	1.73
42829371--42829719	117	3.0	116	84	6	343	33	27	4	34	1.77
42840755--42840802	6	7.8	6	82	13	62	83	0	2	14	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42840751--42840805	14	3.7	14	84	13	74	81	0	1	16	0.77
42840755--42840787	11	2.9	11	95	4	57	84	0	0	15	0.61
42840751--42840801	25	2.0	25	88	7	77	82	0	1	15	0.76
42841663--42842345	151	4.5	152	90	2	982	33	15	18	33	1.92
42841663--42842352	76	9.1	76	90	3	987	33	15	18	33	1.92
42842213--42842343	38	3.4	38	70	16	106	35	14	18	31	1.91
42842272--42842485	92	2.3	92	92	4	346	34	18	17	29	1.94
42842412--42842509	50	2.0	50	85	4	135	35	20	19	24	1.95
42842758--42842816	17	3.6	16	80	8	73	38	1	3	55	1.26
42842755--42842818	11	5.8	11	76	7	67	42	1	3	53	1.26
42843820--42843865	17	2.6	17	86	10	58	76	2	15	6	1.09
42843830--42843873	12	3.6	12	82	11	54	77	2	18	2	0.98
42844582--42844752	29	5.8	29	70	16	120	31	28	4	35	1.76
42844576--42844720	30	4.9	29	72	15	136	31	28	2	36	1.72
42844576--42844786	59	3.6	57	86	6	273	31	30	4	34	1.77
42850649--42850695	24	2.0	24	83	4	60	34	14	36	14	1.88
42850684--42850765	40	2.0	40	88	0	119	35	18	31	14	1.91
42850684--42850861	96	1.9	95	86	1	257	32	19	34	14	1.92
42850776--42850907	41	3.2	41	84	2	185	28	18	36	15	1.92
42851718--42851767	20	2.5	21	80	9	59	6	26	10	58	1.54
42854832--42855057	42	5.1	43	78	13	235	26	19	27	26	1.99
42854933--42855036	53	1.9	54	90	1	165	27	20	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42857072--42857122	16	3.2	16	73	13	52	49	0	1	49	1.12
42859294--42859342	3	16.3	3	100	0	98	32	0	34	32	1.58
42859818--42859853	3	12.0	3	87	0	54	27	0	33	38	1.57
42870109--42870189	30	2.6	31	74	18	80	48	2	1	48	1.23
42871465--42871550	31	2.8	31	81	0	109	34	10	8	46	1.68
42873954--42874023	31	2.3	31	85	5	88	41	7	12	38	1.71
42886277--42886369	47	2.0	46	93	4	161	46	21	8	23	1.79
42891298--42891394	32	3.0	33	81	3	124	38	27	17	16	1.91
42904853--42904909	21	2.7	21	100	0	114	36	5	5	52	1.47
42911514--42911552	11	3.7	11	86	6	55	56	0	2	41	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135