genome.fa.s10.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  111  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37892908--37892935	6	4.7	6	100	0	56	35	14	35	14	1.86
37899336--37899368	15	2.2	15	89	10	50	33	9	0	57	1.30
37901666--37901702	12	3.1	12	88	0	56	27	0	2	70	1.01
37902562--37902587	12	2.2	12	100	0	52	30	0	26	42	1.56
37907051--37907166	58	2.0	60	85	10	159	39	2	5	52	1.37
37908775--37908810	6	6.0	6	100	0	72	33	16	33	16	1.92
37921357--37921554	99	2.0	99	100	0	396	27	22	17	33	1.96
37923828--37923864	17	2.1	18	85	14	51	62	35	0	2	1.10
37929383--37929416	18	1.9	17	88	5	50	2	20	17	58	1.51
37933483--37933520	18	2.1	18	100	0	76	10	44	5	39	1.61
37937339--37937363	5	5.0	5	100	0	50	60	20	20	0	1.37
37937708--37937746	19	2.1	19	100	0	78	35	0	0	64	0.94
37938237--37938293	29	2.0	29	82	6	71	22	5	10	61	1.48
37938546--37938581	19	1.9	18	88	5	54	44	5	2	47	1.41
37941426--37941481	27	2.1	27	90	3	87	14	12	3	69	1.31
37941769--37941927	3	53.7	3	70	7	65	27	3	6	63	1.33
37941777--37941810	14	2.4	14	95	5	59	20	0	0	79	0.73
37943953--37943995	20	2.2	20	95	0	77	48	0	11	39	1.40
37951977--37952080	29	3.5	29	81	12	122	37	6	25	29	1.82
37951977--37952458	58	8.2	57	83	5	493	36	3	28	32	1.73
37951971--37952458	117	4.2	118	86	2	614	36	3	28	31	1.74
37951977--37952458	175	2.7	174	81	5	540	36	3	28	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37952066--37952399	29	11.5	28	69	20	168	36	2	28	32	1.70
37952263--37952433	29	5.9	28	71	20	113	36	2	28	31	1.72
37952416--37952489	29	2.5	30	79	16	68	31	4	29	35	1.76
37953212--37953250	15	2.5	15	87	8	51	48	0	0	51	1.00
37954052--37954109	17	3.4	16	81	11	71	56	5	1	36	1.32
37954402--37955013	76	8.0	76	94	0	1037	33	16	15	34	1.90
37967156--37967556	29	13.8	29	68	22	130	35	3	28	31	1.76
37967484--37967732	29	8.6	29	71	17	153	33	2	29	34	1.72
37967162--37967699	58	9.2	58	86	4	674	34	3	28	32	1.73
37967875--37968223	162	2.2	162	80	5	377	50	14	14	20	1.77
37968897--37968935	15	2.5	15	87	8	51	48	0	0	51	1.00
37969724--37969781	17	3.4	16	86	11	80	58	5	0	36	1.20
37971188--37971381	53	3.6	53	88	0	271	29	15	20	34	1.94
37974633--37974678	20	2.3	20	81	3	58	34	2	13	50	1.53
37974644--37974720	20	3.8	20	82	3	82	36	3	6	53	1.45
37974793--37974843	23	2.3	23	83	10	61	41	5	1	50	1.37
37977835--37977934	50	2.0	50	100	0	200	14	30	12	44	1.81
37983193--37983220	2	14.0	2	100	0	56	50	0	0	50	1.00
37985365--37985419	25	2.3	25	78	12	62	56	1	38	3	1.28
37986530--37986607	31	2.6	29	76	11	77	20	12	11	55	1.68
37991809--37991838	12	2.5	12	88	0	51	66	6	23	3	1.30
37992364--37992405	21	2.0	22	86	9	61	52	21	7	19	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37992671--37992706	2	18.0	2	100	0	72	50	0	0	50	1.00
37998951--37999103	52	2.9	52	83	1	200	33	12	22	31	1.91
37998951--37999140	104	1.8	104	81	8	235	32	13	21	33	1.91
38003430--38003476	20	2.3	20	85	0	58	34	8	27	29	1.87
38007549--38007577	3	9.7	3	100	0	58	31	0	0	68	0.89
38011293--38011358	31	2.1	31	100	0	132	36	18	0	45	1.49
38016401--38016434	12	2.8	13	86	13	54	52	0	0	47	1.00
38018107--38018137	16	1.9	16	93	0	53	67	9	12	9	1.41
38029029--38029070	16	2.6	16	88	7	59	30	4	23	40	1.75
38036066--38036090	10	2.5	10	100	0	50	80	0	0	20	0.72
38037179--38037835	98	6.8	98	77	7	590	21	19	15	43	1.87
38037187--38037836	146	4.5	147	74	6	464	21	19	15	43	1.87
38037187--38037836	49	13.4	49	73	7	396	21	19	15	43	1.87
38043694--38043796	36	2.8	36	82	7	118	35	11	27	25	1.90
38044460--38044511	21	2.5	21	87	0	68	17	13	28	40	1.87
38063841--38063923	43	1.9	43	82	0	103	40	7	0	51	1.29
38069666--38069698	13	2.4	14	90	10	50	36	3	6	54	1.41
38071127--38071176	17	2.9	17	85	8	57	54	2	0	44	1.11
38074553--38074591	15	2.6	15	87	0	51	17	10	0	71	1.12
38076887--38076945	31	1.9	31	100	0	118	54	13	15	16	1.72
38081198--38081222	3	8.3	3	100	0	50	68	0	0	32	0.90
38087745--38087769	13	1.9	13	100	0	50	56	12	8	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38090764--38090804	21	2.0	21	90	0	64	39	2	24	34	1.69
38093352--38093392	18	2.3	18	86	0	55	26	21	24	26	2.00
38097858--38097898	15	2.7	15	92	0	64	34	7	29	29	1.84
38099586--38099636	25	2.0	25	85	7	68	25	11	25	37	1.90
38102383--38102449	19	3.4	19	68	8	53	26	0	35	37	1.57
38102557--38102588	12	2.7	12	95	0	55	34	0	0	65	0.93
38102868--38102907	21	1.9	21	94	0	71	32	0	10	57	1.32
38103074--38103115	13	3.4	12	87	12	59	66	0	0	33	0.92
38103074--38103122	11	4.3	11	84	5	62	63	0	0	36	0.95
38103074--38103122	22	2.1	24	88	7	75	63	0	0	36	0.95
38103289--38103334	14	3.1	15	71	22	51	60	8	0	30	1.26
38103287--38103336	16	3.2	16	73	21	61	60	8	0	32	1.26
38104650--38104734	43	2.0	43	83	4	109	31	11	10	45	1.75
38105611--38105713	7	14.6	7	71	13	59	46	25	0	27	1.59
38105641--38105727	21	4.5	21	72	19	80	50	22	0	26	1.49
38105647--38105727	14	5.8	14	73	15	60	50	22	0	27	1.49
38105641--38105783	56	2.6	55	85	4	189	48	20	1	28	1.58
38105709--38105775	21	3.2	21	85	2	82	47	14	2	34	1.60
38105648--38105759	35	3.2	35	85	7	131	49	20	1	28	1.59
38105683--38105769	35	2.5	35	84	5	95	49	19	2	28	1.60
38108583--38108631	20	2.4	21	80	13	57	65	4	2	28	1.22
38108609--38108665	27	2.1	28	83	9	73	59	10	1	28	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38108680--38108741	4	15.5	4	80	12	65	0	30	0	69	0.89
38108671--38108710	20	2.0	20	90	0	62	2	40	0	57	1.12
38108680--38108741	17	4.1	16	75	17	62	0	30	0	69	0.89
38108680--38108741	32	1.9	32	86	0	88	0	30	0	69	0.89
38108707--38108734	13	2.2	13	100	0	56	0	21	0	78	0.75
38108668--38108741	28	2.6	28	77	8	78	1	31	0	67	0.99
38110327--38110379	21	2.5	21	84	6	63	62	7	1	28	1.33
38111837--38111877	19	2.2	19	86	0	55	58	0	0	41	0.98
38112558--38112639	31	2.6	31	82	3	94	41	14	14	29	1.86
38114026--38114102	23	3.3	23	92	0	127	42	22	19	15	1.88
38117193--38117218	2	13.0	2	100	0	52	50	0	0	50	1.00
38119027--38119075	18	2.7	18	80	0	71	63	0	4	32	1.13
38121364--38121415	17	3.1	17	81	8	52	23	3	1	71	1.13
38121376--38121418	10	4.1	10	79	8	50	23	2	2	72	1.08
38121417--38121471	4	13.2	4	83	11	58	76	0	1	21	0.88
38121419--38121471	24	2.3	23	90	6	81	77	0	1	20	0.87
38121417--38121473	28	2.0	28	90	6	89	77	0	1	21	0.86
38121552--38121589	15	2.7	15	88	8	53	76	0	0	23	0.79
38121554--38121595	22	2.0	22	95	4	77	76	0	0	23	0.79
38121551--38121589	13	2.8	14	84	7	53	74	0	0	25	0.82
38122296--38122331	16	2.2	16	90	0	54	55	2	0	41	1.14
38122368--38122400	15	2.1	16	88	5	50	51	0	15	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38124945--38124994	25	2.0	25	100	0	100	28	24	20	28	1.99
38129723--38129823	26	4.0	24	81	8	87	21	18	24	34	1.96
38129734--38129832	26	3.8	26	83	2	119	23	17	25	34	1.96
38133620--38133675	28	2.0	29	82	10	71	19	0	30	50	1.48
38135632--38135989	177	2.0	177	99	0	707	41	22	11	24	1.86
38139587--38139785	73	2.8	73	91	2	305	33	8	5	52	1.54
38139771--38139797	2	13.5	2	100	0	54	48	0	0	51	1.00
38139791--38139914	59	2.1	59	79	11	130	37	4	6	51	1.49
38139698--38139872	85	2.1	85	85	0	233	37	6	6	49	1.55
38140017--38140080	18	3.6	18	68	14	51	67	9	7	15	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135