genome.fa.s10.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  106  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36460286--36460999	239	3.0	238	93	0	1194	41	16	6	35	1.75
36462322--36462726	51	8.0	51	66	12	158	45	9	2	42	1.49
36462536--36462711	97	1.8	97	81	4	221	43	8	1	46	1.44
36462536--36462762	51	4.6	50	71	11	189	44	8	1	45	1.44
36462020--36462836	149	5.4	149	85	7	974	43	10	2	43	1.52
36463260--36463301	3	14.0	3	94	0	75	64	0	2	33	1.07
36466574--36466604	16	1.9	16	93	0	53	51	3	19	25	1.62
36467184--36467508	61	5.3	61	85	3	424	33	12	20	33	1.90
36471524--36471742	77	2.9	75	82	8	253	30	21	21	27	1.98
36471511--36471765	76	3.3	75	81	5	296	29	21	21	27	1.99
36473441--36473473	15	2.2	15	89	10	50	21	6	0	72	1.05
36473579--36473624	24	2.0	24	87	12	69	21	6	6	65	1.39
36473739--36473768	13	2.3	13	94	0	51	16	10	6	66	1.41
36491049--36491764	240	3.0	239	93	0	1202	41	16	6	35	1.74
36492966--36493201	51	4.7	51	69	17	147	45	10	2	41	1.51
36492800--36493609	149	5.4	148	86	5	987	44	9	2	42	1.50
36492800--36493598	297	2.7	291	86	6	1047	44	9	2	43	1.50
36493445--36493487	21	2.1	21	82	4	52	48	6	0	44	1.29
36494016--36494049	3	11.3	3	93	0	59	61	0	2	35	1.11
36497379--36497411	16	2.1	16	94	0	57	45	3	18	33	1.65
36497981--36498305	61	5.3	61	84	3	415	33	12	20	32	1.91
36497980--36498306	122	2.7	121	85	4	460	33	13	20	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36505844--36506106	76	3.4	76	80	8	284	30	21	21	26	1.98
36507763--36507796	16	2.2	15	89	5	50	20	5	0	73	1.04
36507902--36507947	24	2.0	24	87	12	69	26	8	0	65	1.21
36514518--36514624	20	5.0	21	72	9	65	68	17	4	9	1.35
36514575--36514619	12	3.8	12	81	0	54	71	15	6	6	1.29
36514561--36514624	24	2.7	23	76	9	65	70	17	4	7	1.29
36514553--36514662	56	2.0	55	82	10	134	67	19	7	6	1.37
36516343--36516375	3	11.0	3	93	0	57	36	0	63	0	0.95
36520702--36520728	4	6.8	4	100	0	54	22	0	0	77	0.76
36523434--36523461	5	5.6	5	100	0	56	78	0	0	21	0.75
36524663--36524709	25	2.0	23	83	8	58	65	6	4	23	1.33
36524470--36524879	135	3.0	137	78	9	440	52	9	12	24	1.68
36526182--36526328	73	2.0	73	100	0	294	43	7	14	34	1.74
36526730--36526896	30	5.6	28	74	13	102	40	7	20	31	1.80
36526819--36526929	30	3.7	30	79	0	105	35	7	23	34	1.82
36528318--36528369	13	3.8	13	71	14	50	0	13	7	78	0.94
36529076--36529257	45	4.0	45	79	2	202	24	19	24	31	1.98
36529624--36530251	98	6.4	98	86	0	788	20	28	16	34	1.94
36529640--36530254	49	12.6	49	74	3	502	20	28	16	34	1.94
36530640--36530850	112	1.9	114	86	5	304	39	10	18	31	1.85
36531185--36531223	10	3.8	10	89	3	51	7	10	0	82	0.86
36532075--36532112	16	2.2	18	90	9	62	2	13	0	84	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36536285--36536452	30	5.6	30	79	9	164	38	5	20	35	1.77
36537408--36537461	19	2.7	20	75	16	58	1	12	3	81	0.91
36537411--36537458	25	2.0	24	87	4	69	2	14	4	79	0.98
36540341--36540395	23	2.4	23	84	0	65	30	20	14	34	1.92
36545155--36545249	49	1.9	49	91	4	156	41	7	23	28	1.81
36545878--36545905	14	2.0	14	100	0	56	0	14	0	85	0.59
36547536--36547713	9	19.7	9	68	16	75	29	2	1	66	1.10
36547509--36547612	55	1.9	53	82	7	129	23	4	0	71	1.11
36547536--36547609	19	4.0	18	74	15	62	24	2	1	71	1.07
36547596--36547653	26	2.3	24	82	11	71	34	3	0	62	1.12
36547653--36547701	10	5.1	10	76	14	50	34	0	0	65	0.93
36547652--36547694	20	2.1	21	91	4	70	32	0	0	67	0.91
36547537--36547714	17	10.3	17	68	18	84	29	2	1	67	1.10
36548598--36548660	25	2.3	28	81	10	78	41	1	0	57	1.08
36550554--36550614	30	2.0	30	87	0	86	37	3	18	40	1.67
36553375--36553476	30	3.4	30	74	8	100	33	2	28	35	1.72
36553369--36553506	59	2.3	58	86	1	186	33	2	29	34	1.70
36554554--36554603	26	1.9	26	83	0	64	46	2	0	52	1.12
36555265--36555343	6	13.8	6	70	13	60	48	2	1	48	1.23
36555265--36555343	11	6.9	12	71	15	60	48	2	1	48	1.23
36555279--36555344	17	3.9	17	77	15	82	50	3	1	45	1.26
36556416--36556464	15	3.3	15	79	0	53	30	6	18	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36559419--36559445	9	3.0	9	100	0	54	0	22	33	44	1.53
36559746--36559994	38	6.4	38	68	18	104	28	14	22	34	1.94
36559818--36560339	78	6.9	78	84	6	687	27	15	23	33	1.95
36559855--36560298	150	3.0	149	86	3	633	27	15	23	33	1.95
36560005--36560331	38	8.6	38	68	8	180	27	14	24	33	1.94
36576130--36576866	367	2.0	367	94	0	1276	39	16	9	34	1.81
36580019--36580061	19	2.3	17	78	21	50	51	4	0	44	1.22
36592771--36592806	18	2.1	18	89	5	56	41	0	25	33	1.55
36593103--36593139	18	2.1	18	89	0	56	48	0	27	24	1.51
36594688--36594731	23	2.0	22	86	4	61	45	15	0	38	1.47
36606699--36607153	228	2.0	228	97	0	865	26	28	18	25	1.98
36608667--36608724	21	2.8	21	83	0	71	34	24	13	27	1.93
36610635--36610753	56	2.1	56	81	6	134	25	29	23	21	1.99
36612209--36612241	17	1.9	17	88	11	50	36	0	0	63	0.95
36622535--36622655	61	2.0	61	85	3	163	47	0	2	50	1.14
36622562--36622628	24	2.9	23	76	10	66	44	0	2	52	1.16
36624427--36624466	14	2.7	15	88	7	55	70	0	7	22	1.12
36627672--36627736	30	2.2	30	83	10	80	53	27	10	7	1.62
36630768--36630823	29	1.9	29	92	0	94	55	17	7	19	1.65
36635058--36635130	36	2.0	36	97	0	137	36	19	12	31	1.88
36642900--36643192	51	5.7	51	94	0	424	32	25	14	27	1.95
36646030--36646180	28	5.4	28	75	7	103	36	24	13	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36646065--36646180	56	2.1	56	83	0	142	35	24	12	28	1.91
36646177--36646339	28	5.9	28	73	7	143	34	20	19	25	1.96
36646199--36646431	111	2.1	112	85	5	312	34	19	21	25	1.96
36646199--36646412	56	3.9	55	81	2	250	33	20	21	25	1.97
36646187--36646412	28	8.1	27	68	13	109	34	20	20	24	1.97
36663748--36663794	18	2.6	18	93	0	85	55	0	44	0	0.99
36671584--36671789	40	5.2	40	87	0	286	26	20	28	24	1.99
36673884--36673926	22	2.0	22	81	9	52	46	9	4	39	1.57
36675788--36675831	23	1.9	23	86	9	63	11	38	0	50	1.39
36682070--36682110	12	3.5	12	78	15	50	75	0	7	17	1.02
36691731--36691772	18	2.5	16	85	11	57	16	14	11	57	1.66
36692371--36692402	6	4.9	7	85	14	50	75	0	25	0	0.81
36695117--36695223	53	2.0	53	100	0	214	37	24	19	18	1.94
36695314--36695528	115	1.9	115	89	1	333	33	26	19	19	1.96
36699277--36699330	22	2.5	22	93	0	90	38	22	24	14	1.91
36713264--36713389	25	4.9	25	80	5	128	26	18	23	31	1.97
36726646--36726697	18	3.0	18	78	15	65	28	3	5	61	1.37
36730831--36730876	23	2.0	23	100	0	92	39	21	8	30	1.84
36741880--36741927	24	2.0	24	91	0	78	22	18	14	43	1.87
36748727--36748791	26	2.5	26	92	2	114	36	3	27	32	1.72
36748945--36748990	23	2.0	23	95	0	83	26	10	13	50	1.74
36753116--36753179	26	2.5	26	89	2	103	37	1	26	34	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36756485--36756522	18	2.1	18	90	9	60	50	15	10	23	1.75
36757242--36757273	3	10.3	3	93	6	55	68	0	0	31	0.90
36760085--36760119	16	2.2	16	90	10	54	17	0	0	82	0.66
36761652--36761890	52	4.6	52	90	0	388	35	23	14	26	1.93
36762300--36762335	18	2.1	16	90	10	54	30	16	0	52	1.44
36769904--36769936	11	3.0	11	90	0	57	21	15	0	63	1.30
36771623--36771768	58	2.5	58	81	11	174	45	2	1	50	1.24
36771938--36772008	16	4.4	16	85	0	88	29	23	4	42	1.73
36772576--36772776	109	1.8	110	81	7	248	34	10	14	40	1.81
36776479--36776530	19	2.6	19	75	16	52	40	0	1	57	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135