genome.fa.s10.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  91  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30681147--30681191	23	2.0	23	86	0	63	44	15	0	40	1.47
30691213--30691257	23	2.0	23	86	0	63	44	15	0	40	1.47
30694844--30694882	13	3.0	13	88	0	51	30	0	2	66	1.05
30700552--30700870	42	7.9	42	78	10	333	28	26	18	27	1.98
30700552--30700870	79	3.9	79	77	8	286	28	26	18	27	1.98
30700856--30700894	20	2.0	20	100	0	78	33	20	20	25	1.97
30700810--30700932	62	2.0	63	93	1	212	30	25	17	26	1.97
30700877--30701105	42	5.6	42	87	6	308	30	26	18	24	1.98
30700877--30701105	83	2.8	82	87	3	318	30	26	18	24	1.98
30700697--30701057	187	2.0	183	84	6	469	30	25	18	25	1.98
30700877--30701103	125	1.9	120	85	4	319	30	26	18	24	1.98
30702843--30702876	17	2.0	17	88	0	50	17	8	2	70	1.25
30702949--30703148	30	6.7	30	80	3	134	37	23	4	35	1.75
30702981--30703087	31	3.6	30	86	3	126	38	26	2	32	1.71
30703005--30703117	29	3.8	29	83	3	118	34	24	6	34	1.81
30708744--30708792	24	2.0	24	84	7	64	4	24	8	63	1.40
30709084--30709119	18	2.0	18	89	10	56	2	22	2	72	1.11
30711259--30711604	172	2.0	172	96	1	640	23	22	14	39	1.91
30725362--30725469	28	3.9	28	85	2	128	32	17	27	22	1.96
30726089--30726149	24	2.5	24	97	0	113	22	14	27	34	1.94
30726214--30726262	21	2.3	21	85	0	62	26	12	28	32	1.92
30730003--30730062	28	2.1	28	93	0	102	53	10	21	15	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30730345--30730455	28	4.0	28	84	2	134	31	15	27	25	1.95
30730345--30730454	56	2.0	56	90	0	175	30	15	28	25	1.96
30731166--30731232	21	3.2	20	76	16	64	22	14	25	37	1.93
30733609--30733649	17	2.4	18	80	12	59	51	9	21	17	1.74
30738561--30738701	67	2.2	63	89	5	219	46	0	4	47	1.29
30741280--30741395	58	2.0	58	90	6	184	41	0	5	53	1.23
30744970--30745031	23	2.6	24	82	7	65	27	14	9	48	1.75
30746960--30747021	24	2.6	24	86	0	88	25	14	9	50	1.73
30748949--30748999	24	2.1	24	92	0	84	25	13	5	54	1.61
30748949--30749011	24	2.6	24	87	0	72	26	14	9	49	1.74
30750956--30751002	24	2.0	24	86	0	67	25	10	8	55	1.62
30751882--30751944	24	2.6	24	87	0	90	25	14	9	50	1.72
30757076--30757112	19	1.9	19	89	10	58	0	43	2	54	1.14
30790035--30790222	52	3.6	52	85	2	236	32	25	15	25	1.96
30790035--30790222	104	1.8	104	84	4	263	32	25	15	25	1.96
30796571--30796644	31	2.4	31	93	6	125	52	0	1	45	1.09
30796571--30796651	30	2.7	30	83	11	103	50	0	1	48	1.08
30797490--30797532	17	2.4	18	84	3	52	27	2	2	67	1.15
30800606--30800644	17	2.3	17	86	0	51	51	12	17	17	1.76
30801077--30801131	27	2.0	27	85	3	74	1	41	0	56	1.10
30815785--30815830	18	2.6	18	80	19	60	56	0	39	4	1.19
30816797--30816848	9	5.7	9	72	4	50	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30816803--30816852	19	2.5	20	76	23	61	76	0	24	0	0.80
30831720--30831771	25	2.1	25	96	0	95	50	17	15	17	1.79
30863347--30863381	15	2.3	15	95	0	61	45	11	14	28	1.79
30872624--30872670	25	1.9	25	87	12	71	2	29	0	68	1.02
30879978--30880019	20	2.0	20	86	4	57	69	21	2	7	1.25
30880004--30880110	20	5.2	20	75	13	92	65	21	8	4	1.38
30879991--30880110	61	1.9	62	83	11	156	66	20	7	5	1.36
30880010--30880096	42	2.1	40	87	8	122	67	19	8	4	1.34
30880004--30880110	22	5.2	21	75	15	98	65	21	8	4	1.38
30882933--30882967	16	2.2	16	89	0	52	34	14	11	40	1.82
30885184--30885242	26	2.2	28	87	6	86	33	5	10	50	1.58
30885205--30885243	13	2.8	13	88	7	51	38	2	10	48	1.51
30905340--30905372	16	2.0	17	88	5	50	48	9	9	33	1.66
30912751--30912883	71	1.9	71	82	3	169	35	10	21	33	1.87
30923958--30923994	20	2.0	20	89	10	60	0	21	0	78	0.75
30928222--30928261	18	2.2	18	100	0	80	35	10	22	32	1.87
30942579--30942635	21	2.5	23	86	8	73	38	28	8	24	1.85
30947430--30947472	17	2.5	17	88	3	59	37	0	4	58	1.19
30947430--30947477	18	2.8	17	87	6	62	37	0	6	56	1.25
30947446--30947485	16	2.4	17	87	4	55	37	2	5	55	1.35
30948560--30948598	10	3.8	10	86	6	51	71	2	20	5	1.17
30949265--30949560	59	5.1	57	84	6	371	33	29	2	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30949265--30949561	58	5.1	59	85	4	395	32	29	2	34	1.72
30949265--30949561	117	2.5	116	88	3	436	32	29	2	34	1.72
30949306--30949524	29	7.6	28	65	18	92	34	29	2	33	1.70
30961888--30962082	86	2.3	86	89	3	286	35	18	24	20	1.95
30962629--30962683	18	3.1	18	79	7	60	40	0	7	52	1.29
30962652--30962683	16	1.9	17	93	6	57	37	0	6	56	1.25
30962652--30962691	16	2.4	17	87	4	55	37	2	5	55	1.35
30963763--30963801	10	3.8	10	86	6	51	71	2	20	5	1.17
30964494--30964894	29	13.7	29	65	24	148	31	29	2	35	1.72
30964481--30964953	59	8.1	59	91	1	673	31	30	2	35	1.71
30964481--30964956	235	2.0	234	89	2	731	31	29	2	35	1.71
30964729--30964937	29	7.1	29	65	20	105	32	29	2	35	1.71
30968819--30968906	34	2.6	34	80	3	106	40	31	13	13	1.84
30971562--30971691	57	2.3	57	87	1	179	27	18	4	49	1.67
30973187--30973222	3	12.0	3	87	0	54	63	30	0	5	1.17
30973222--30973254	3	11.0	3	100	0	66	66	0	0	33	0.92
30974537--30974579	22	2.0	22	86	9	61	62	13	0	23	1.31
30986190--30986263	20	3.6	20	78	9	69	52	6	5	35	1.51
30996506--30996535	15	2.1	15	93	6	53	20	33	6	40	1.78
31003339--31003390	26	2.0	27	85	14	74	5	19	1	73	1.14
31006301--31006340	21	2.0	21	90	5	64	67	7	12	12	1.41
31020012--31020076	30	2.2	30	85	0	85	21	23	29	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31026485--31026590	30	3.5	30	76	2	88	26	26	21	25	2.00
31026482--31026582	15	6.7	15	72	2	69	26	26	21	24	2.00
31027462--31027501	18	2.2	19	86	13	57	15	5	7	72	1.24
31030502--31030583	29	2.9	29	73	7	71	58	3	3	34	1.33
31030828--31030933	9	11.8	9	68	24	55	72	3	4	18	1.18
31030808--31030918	45	2.4	47	75	18	115	71	4	7	17	1.26
31030902--31030942	13	3.2	13	89	3	57	73	2	0	24	0.96
31031315--31031373	23	2.5	23	91	5	91	52	20	3	23	1.61
31031964--31032405	45	9.5	45	86	3	542	26	17	26	30	1.97
31031964--31032405	92	4.8	90	86	4	537	26	17	26	30	1.97
31031964--31032440	227	2.1	231	86	3	656	26	17	24	31	1.97
31032572--31032993	49	8.6	49	77	1	362	18	25	17	39	1.92
31032573--31032993	98	4.3	96	82	5	461	18	25	17	38	1.92
31032592--31032993	195	2.1	196	85	1	529	18	25	16	38	1.92
31042881--31043960	542	2.0	542	98	0	2097	28	16	21	33	1.95
31047356--31047388	15	2.1	16	88	5	50	9	0	3	87	0.63
31050688--31050747	17	3.5	17	83	2	66	48	11	18	21	1.80
31062611--31062650	18	2.3	18	86	4	55	17	15	10	57	1.64
31063231--31063265	14	2.4	15	95	4	63	77	0	22	0	0.78
31067543--31067580	19	2.0	19	94	0	67	23	10	34	31	1.89
31078501--31078598	28	3.5	28	72	5	81	26	9	24	39	1.85
31078719--31078789	28	2.5	28	86	8	92	14	16	22	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31081834--31081869	16	2.2	16	90	0	54	58	11	5	25	1.54
31114951--31115166	79	2.7	78	84	6	283	32	12	11	43	1.79
31115283--31115315	2	16.5	2	93	0	57	45	0	0	54	0.99
31115466--31115681	79	2.7	78	86	6	301	32	12	11	43	1.78
31114722--31115743	515	2.0	507	97	1	1936	32	12	11	43	1.79
31115785--31115844	26	2.3	26	100	0	120	36	3	8	51	1.49
31118990--31119142	9	16.3	9	70	15	89	65	1	2	30	1.14
31119023--31119072	20	2.5	21	80	9	59	60	0	0	40	0.97
31119076--31119142	19	3.7	19	78	11	77	67	1	2	28	1.14
31119407--31119469	19	3.3	19	73	6	65	33	3	1	61	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135