genome.fa.s10.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  57  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19666133--19666241	16	6.2	16	73	18	60	54	0	1	43	1.17
19666145--19666214	10	7.2	10	71	18	58	57	0	2	40	1.14
19666600--19666652	20	2.7	20	88	8	74	54	5	1	37	1.35
19667384--19667433	17	3.1	16	81	18	59	32	0	0	68	0.90
19667384--19667432	15	3.1	16	82	8	55	32	0	0	67	0.91
19671802--19671906	53	2.0	53	94	3	187	37	18	4	40	1.71
19675215--19675393	33	5.4	33	86	0	223	30	5	45	19	1.72
19677780--19678062	28	9.8	28	67	20	109	33	2	30	33	1.72
19677842--19678003	30	5.5	31	66	24	89	35	3	27	33	1.75
19677780--19678034	59	4.4	59	86	3	295	34	2	29	32	1.72
19677842--19677938	31	3.2	31	70	14	85	35	3	29	31	1.73
19677780--19678069	29	10.0	29	68	23	137	33	2	30	33	1.72
19679045--19679086	20	2.1	20	86	0	57	40	0	0	59	0.97
19679877--19679949	17	4.4	16	81	10	76	54	1	2	41	1.23
19679877--19679961	11	7.5	11	75	15	66	56	1	2	40	1.20
19679859--19679949	22	4.1	22	77	9	69	53	2	3	40	1.29
19679877--19679961	6	15.0	6	74	14	74	56	1	2	40	1.20
19679879--19679961	28	2.9	29	86	12	111	57	1	2	38	1.19
19679883--19679972	29	3.2	28	85	4	101	56	3	2	37	1.28
19689191--19689499	29	10.5	29	67	23	150	33	1	30	33	1.68
19689186--19689500	59	5.4	57	84	6	330	33	1	31	33	1.68
19689188--19689500	118	2.7	115	84	6	414	33	1	31	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19689217--19689538	59	5.5	57	83	6	236	33	1	30	34	1.69
19690504--19690545	20	2.1	20	86	0	57	40	0	0	59	0.97
19691337--19691413	6	14.0	6	73	20	62	54	1	2	41	1.22
19691321--19691380	17	3.7	15	80	10	57	48	3	3	45	1.35
19691337--19691398	11	5.7	11	73	17	58	53	1	1	43	1.20
19691337--19691413	17	4.4	17	78	13	75	54	1	2	41	1.22
19691361--19691408	21	2.2	21	92	3	78	58	0	4	37	1.18
19693223--19693325	51	2.0	51	90	0	161	48	16	7	27	1.73
19696154--19696209	26	2.2	26	80	6	60	42	7	3	46	1.48
19712103--19712226	42	2.9	42	75	10	117	23	17	17	41	1.90
19712992--19713055	24	2.7	24	82	4	85	17	35	0	46	1.48
19716355--19716413	26	2.3	27	80	11	70	33	16	11	37	1.86
19716375--19716525	50	3.0	50	82	1	142	33	22	13	31	1.92
19716459--19716525	25	2.7	24	71	15	64	32	25	16	25	1.96
19719437--19719490	25	2.2	25	83	6	67	37	27	16	18	1.93
19722540--19722621	31	2.6	30	78	7	92	23	10	9	56	1.63
19722552--19722611	30	2.0	30	90	3	93	21	10	13	55	1.67
19723568--19723627	19	3.0	20	76	16	70	58	6	0	35	1.24
19727120--19727271	45	3.4	45	83	1	173	18	25	17	38	1.92
19729459--19729522	12	5.3	12	88	0	83	65	17	9	7	1.44
19729459--19729522	24	2.7	24	87	0	92	65	17	9	7	1.44
19729510--19729561	22	2.3	22	86	3	68	71	13	3	11	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19729560--19729621	22	2.8	22	82	7	81	64	19	8	8	1.45
19731143--19731168	2	13.0	2	100	0	52	50	0	0	50	1.00
19732423--19732494	36	2.0	36	94	0	126	30	16	27	25	1.97
19735200--19735237	19	2.0	19	100	0	76	26	5	21	47	1.71
19736526--19736559	17	1.9	18	88	5	52	38	0	0	61	0.96
19753803--19753834	14	2.1	16	88	11	50	62	9	0	28	1.26
19758782--19758838	15	3.5	15	73	17	60	50	1	0	47	1.11
19760899--19761178	30	9.5	30	66	15	120	36	1	26	34	1.67
19760900--19761151	59	4.3	59	85	6	307	36	1	27	34	1.67
19761126--19761209	29	2.8	30	79	16	95	30	3	22	42	1.70
19762291--19762352	25	2.6	25	85	7	85	35	3	4	56	1.37
19763143--19763191	23	2.2	22	88	3	71	36	2	2	59	1.21
19763147--19763191	17	2.6	17	82	0	54	37	2	2	57	1.23
19763863--19763888	12	2.2	12	100	0	52	50	26	15	7	1.71
19763875--19764585	201	3.6	189	87	5	822	21	21	21	35	1.96
19763964--19764588	201	3.2	200	89	2	960	20	21	20	36	1.95
19776758--19776858	28	3.5	28	71	26	84	36	2	29	30	1.72
19776696--19776925	117	2.0	118	86	4	322	34	3	29	33	1.73
19776818--19776911	30	3.2	30	71	14	95	32	3	32	30	1.74
19776695--19776928	59	4.0	58	85	1	297	34	2	29	32	1.73
19776699--19776933	29	8.1	29	67	13	108	33	2	29	33	1.73
19778071--19778133	25	2.6	25	85	5	85	34	3	4	57	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19778075--19778135	12	5.0	13	74	18	51	36	1	4	57	1.30
19779360--19779439	29	2.6	30	88	5	108	32	10	15	42	1.79
19779633--19779692	31	2.0	30	80	6	68	48	13	6	31	1.68
19793985--19794056	37	1.9	37	94	0	126	20	12	26	40	1.88
19805772--19805822	24	2.1	24	92	0	84	56	7	11	23	1.61
19818151--19818213	24	2.6	24	87	0	90	50	9	14	25	1.72
19819498--19819530	3	11.0	3	100	0	66	66	0	0	33	0.92
19819858--19819900	11	3.8	11	80	17	52	30	2	2	65	1.18
19819861--19819904	23	1.9	23	90	0	70	31	2	4	61	1.28
19820885--19820938	26	2.1	26	85	0	72	29	14	25	29	1.95
19834821--19834884	3	21.3	3	100	0	128	32	0	0	67	0.91
19837922--19837986	27	2.3	29	89	10	116	21	7	26	44	1.79
19842867--19843112	78	3.2	78	80	4	219	35	23	17	23	1.95
19842918--19843534	42	15.4	39	71	12	170	31	25	16	26	1.96
19842996--19843600	161	3.8	161	81	4	586	30	25	17	26	1.97
19842977--19843560	241	2.4	239	82	6	759	30	25	17	26	1.97
19843042--19843597	42	13.8	42	76	8	496	30	25	17	27	1.97
19854525--19854560	2	18.5	2	94	5	65	52	0	0	47	1.00
19854680--19854761	38	2.1	39	86	6	114	52	3	3	40	1.37
19854680--19854739	2	29.5	2	80	9	59	53	5	1	40	1.33
19856483--19856813	40	8.4	39	75	8	305	25	17	27	30	1.97
19856483--19856822	79	4.3	79	90	0	529	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19856936--19857045	50	2.2	50	80	6	116	20	19	21	38	1.94
19858502--19858556	17	3.0	18	84	7	58	56	3	0	40	1.17
19858526--19858575	2	25.5	2	85	4	66	50	4	2	44	1.32
19860501--19860721	39	5.6	39	76	8	225	23	18	28	29	1.98
19860507--19860699	40	4.9	38	75	9	199	23	18	27	30	1.97
19860509--19860719	79	2.7	79	95	1	379	23	17	28	30	1.97
19860780--19860911	50	2.6	50	76	4	131	20	20	20	38	1.94
19861955--19861993	17	2.2	19	86	9	55	23	12	20	43	1.86
19867757--19867876	58	2.1	58	91	0	195	48	16	1	33	1.56
19871397--19871844	224	2.0	224	91	0	716	30	25	13	30	1.94
19874131--19874167	13	2.9	13	92	4	58	10	16	29	43	1.82
19874191--19874677	41	11.9	41	87	0	661	33	21	28	15	1.94
19874297--19874411	24	5.4	24	64	26	87	29	24	32	13	1.94
19876626--19876651	2	13.0	2	100	0	52	0	50	0	50	1.00
19878028--19878337	43	7.3	43	85	2	392	24	19	26	29	1.98
19878028--19878337	85	3.6	86	83	6	391	24	19	26	29	1.98
19878488--19878524	17	2.1	18	90	5	58	59	8	0	32	1.27
19879909--19879937	4	7.5	4	92	7	51	75	0	0	24	0.80
19888639--19888722	30	2.8	30	80	12	84	47	10	3	38	1.56
19896331--19896395	24	2.7	24	85	0	94	50	9	13	26	1.71
19898283--19898345	24	2.6	24	87	0	90	50	9	14	25	1.72
19898709--19898900	92	2.1	94	93	2	325	46	13	2	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19898731--19898869	46	3.0	44	64	21	106	50	13	2	33	1.54
19899740--19899789	24	2.1	24	92	0	82	24	12	8	56	1.62
19909959--19909996	12	3.1	13	81	14	53	71	0	28	0	0.87
19910532--19910572	18	2.3	18	86	0	64	63	0	34	2	1.08
19918061--19918113	24	2.2	23	80	9	61	77	3	7	11	1.10
19926419--19926697	24	11.6	24	85	1	353	19	28	13	37	1.91
19930798--19930840	17	2.5	17	80	0	50	51	0	6	41	1.29
19941591--19941646	27	2.1	27	100	0	112	41	14	17	26	1.88
19942960--19943004	23	1.9	24	86	4	65	28	13	2	55	1.50
19949577--19950211	328	1.9	327	89	2	970	34	15	17	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135