genome.fa.s10.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  26  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10517641--10517996	30	11.9	30	86	1	455	37	22	3	37	1.70
10517969--10518165	59	3.4	57	74	5	189	29	29	4	36	1.77
10519111--10519155	18	2.5	18	100	0	90	62	4	0	33	1.15
10530173--10530213	11	3.5	11	84	12	55	68	2	0	29	1.03
10531202--10531247	24	2.0	24	82	4	58	65	4	4	26	1.30
10531257--10531284	11	2.5	11	100	0	56	0	17	0	82	0.68
10532832--10533014	97	1.9	97	90	2	296	37	16	18	27	1.92
10533291--10533380	29	3.1	29	81	9	103	35	4	30	30	1.77
10533345--10533420	28	2.7	29	78	12	77	34	6	28	30	1.83
10533406--10533518	29	4.0	29	80	8	110	36	5	22	36	1.77
10533421--10533518	28	3.4	28	78	9	101	34	6	23	35	1.80
10535466--10535504	17	2.3	17	90	0	60	61	0	2	35	1.10
10540840--10540874	18	1.9	18	100	0	70	40	0	5	54	1.24
10544424--10544461	18	2.0	20	85	10	53	28	0	5	65	1.14
10559578--10559646	29	2.5	27	73	13	68	46	2	0	50	1.16
10559599--10559674	31	2.5	30	82	16	79	43	3	0	52	1.19
10559719--10559768	15	3.1	15	74	20	55	54	2	0	44	1.11
10559799--10559836	19	2.0	20	84	5	51	42	7	5	44	1.56
10560325--10560360	18	2.1	17	89	5	54	50	2	0	47	1.15
10571230--10571345	42	2.8	42	92	1	180	43	17	8	30	1.78
10571929--10571967	2	19.5	2	100	0	78	0	48	0	51	1.00
10585697--10585735	19	2.1	19	85	9	53	48	7	0	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10598964--10599022	30	2.1	27	84	12	75	55	8	3	32	1.46
10604803--10604847	19	2.4	19	81	7	56	37	0	4	57	1.19
10608476--10608527	22	2.5	20	80	20	61	19	3	0	76	0.93
10610048--10610092	19	2.4	19	81	7	56	37	0	2	60	1.09
10619640--10619715	39	1.9	39	86	5	109	5	7	17	69	1.31
10619686--10619804	24	5.3	21	82	6	78	7	5	15	70	1.30
10619650--10619741	20	4.6	20	82	6	98	7	7	16	68	1.37
10619651--10619741	40	2.3	40	84	3	112	7	7	16	68	1.38
10619658--10619855	92	2.1	94	80	6	224	7	6	18	68	1.35
10619743--10619858	56	2.1	57	83	4	146	6	5	18	69	1.30
10619720--10619857	12	11.8	12	77	7	97	7	5	18	68	1.32
10619777--10619871	44	2.2	44	80	3	102	9	5	17	67	1.37
10622040--10622176	30	4.6	29	79	8	150	37	2	24	35	1.68
10622040--10622169	60	2.2	60	87	4	183	39	2	24	33	1.68
10623141--10623183	23	1.9	22	85	4	59	55	0	0	44	0.99
10625744--10625772	2	14.5	2	100	0	58	0	0	48	51	1.00
10639877--10639936	30	2.0	29	90	3	93	33	0	3	63	1.11
10640095--10640140	23	2.0	23	82	0	56	32	10	19	36	1.87
10640337--10640452	58	2.0	58	91	3	189	46	18	0	34	1.50
10643597--10643803	87	2.3	87	81	8	240	38	17	8	34	1.81
10643866--10643913	17	2.8	17	83	3	60	77	2	0	20	0.88
10643892--10643964	30	2.5	29	84	8	103	60	2	1	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10643952--10644048	29	3.3	29	74	8	99	57	2	8	31	1.40
10644503--10644666	88	1.9	88	84	7	226	34	10	18	35	1.86
10644497--10644700	88	2.3	87	78	5	223	37	11	16	33	1.85
10645212--10645277	18	3.5	19	74	25	59	46	0	0	53	1.00
10645721--10645758	12	2.8	13	85	14	51	42	7	10	39	1.69
10654090--10654143	19	2.8	20	80	11	58	59	11	0	29	1.32
10656299--10656343	21	2.1	21	91	0	72	37	11	8	42	1.72
10659047--10659088	3	14.0	3	100	0	84	66	0	0	33	0.92
10659643--10659680	17	2.2	18	86	13	53	68	0	2	28	1.03
10659690--10659740	20	2.6	20	84	3	68	62	7	1	27	1.33
10659803--10659879	20	3.9	19	77	5	64	58	3	1	36	1.25
10661500--10661527	8	3.5	8	100	0	56	21	10	10	57	1.63
10664000--10664160	53	3.0	52	85	2	196	44	9	13	32	1.75
10664176--10664235	6	10.0	6	87	5	77	30	48	1	20	1.59
10664409--10664471	21	3.0	21	81	9	76	36	0	3	60	1.13
10664409--10664472	20	3.2	20	80	8	67	35	0	3	60	1.12
10664417--10664480	21	3.1	21	75	22	64	31	0	4	64	1.14
10665262--10665320	18	3.2	18	81	11	66	57	1	3	37	1.25
10665675--10665710	16	2.3	15	90	4	54	50	0	0	50	1.00
10665847--10665903	28	2.0	29	86	3	80	42	5	0	52	1.24
10667278--10667317	17	2.4	16	84	8	53	30	0	2	67	1.04
10672056--10672129	36	2.1	36	97	0	139	31	14	10	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10679539--10679570	13	2.4	14	94	5	57	34	0	0	65	0.93
10685270--10685303	17	2.0	17	88	0	50	20	23	5	50	1.70
10685967--10686019	25	2.1	25	100	0	106	30	33	24	11	1.90
10696129--10696155	12	2.2	12	100	0	54	33	25	7	33	1.84
10697709--10697747	18	2.2	18	85	0	51	30	23	17	28	1.97
10698384--10698416	5	6.6	5	100	0	66	42	0	0	57	0.98
10698630--10698672	11	3.8	11	84	6	59	46	0	0	53	1.00
10698630--10698703	6	12.8	6	77	8	73	47	1	0	51	1.09
10698612--10698703	17	5.4	17	83	6	114	46	1	1	51	1.15
10699423--10699478	3	18.0	3	80	7	58	57	1	3	37	1.27
10699421--10699478	19	3.1	19	82	0	71	56	1	3	37	1.26
10699426--10699471	16	2.9	16	86	0	65	56	2	2	39	1.24
10700536--10700674	30	4.7	29	78	15	133	38	26	2	32	1.68
10700536--10700739	29	6.9	29	75	10	130	36	27	2	33	1.70
10700546--10700798	59	4.3	59	78	7	187	35	26	3	33	1.73
10700630--10700798	30	5.8	28	70	14	99	34	27	3	33	1.74
10700630--10700798	29	5.7	29	71	14	105	34	27	3	33	1.74
10700696--10700860	59	2.8	58	85	2	213	32	27	7	32	1.84
10713289--10713313	7	3.6	7	100	0	50	16	0	32	52	1.44
10716520--10716547	3	9.3	3	100	0	56	35	0	0	64	0.94
10717066--10717124	9	6.6	9	74	18	52	30	1	1	66	1.12
10722261--10722395	40	3.4	38	73	12	96	30	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10722293--10722396	37	2.7	38	76	5	93	31	26	19	22	1.97
10723249--10723330	13	6.6	12	74	16	60	51	1	1	46	1.16
10728391--10728525	40	3.4	38	73	12	96	30	28	20	21	1.98
10728423--10728526	37	2.7	38	76	5	93	31	26	19	22	1.97
10729379--10729460	13	6.6	12	74	16	60	51	1	1	46	1.16
10733659--10733872	23	9.5	23	73	14	160	42	21	24	12	1.87
10733713--10733787	39	1.9	39	91	0	123	44	21	22	12	1.85
10733752--10733872	48	2.6	46	87	7	172	39	23	25	11	1.88
10738366--10738429	27	2.4	27	89	5	94	60	0	3	35	1.12
10740690--10740736	24	2.0	25	91	8	80	55	4	4	36	1.39
10744148--10744204	29	1.9	30	85	3	80	47	14	26	12	1.79
10744942--10745081	68	2.1	68	97	0	262	21	13	20	45	1.85
10757678--10757712	18	1.9	18	88	0	52	31	5	2	60	1.35
10765052--10765124	19	4.2	18	70	18	55	41	0	0	58	0.98
10765085--10765123	19	2.1	19	90	4	62	43	0	0	56	0.99
10765029--10765125	33	3.1	31	76	18	87	40	1	1	57	1.12
10765029--10765114	30	2.8	30	72	20	79	40	1	1	56	1.14
10771126--10771171	24	1.9	23	86	8	65	56	6	4	32	1.45
10773498--10773539	19	2.3	19	87	4	59	71	2	2	23	1.10
10774599--10774644	24	1.9	23	86	8	65	56	6	2	34	1.37
10777442--10777490	25	2.0	24	84	11	64	53	0	2	44	1.12
10798751--10798793	16	2.6	16	85	10	52	0	25	4	69	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10807512--10807712	99	2.0	99	100	0	402	38	16	17	27	1.91
10815881--10815918	18	2.1	18	90	0	58	13	36	7	42	1.73
10818997--10819114	59	2.0	59	96	0	218	31	19	11	38	1.87
10819702--10819812	17	6.3	17	83	5	132	40	0	4	54	1.27
10819722--10819812	6	15.7	6	73	11	73	40	1	3	54	1.24
10819702--10819812	35	3.1	35	83	8	136	40	0	4	54	1.27
10821447--10821488	3	14.0	3	100	0	84	33	0	0	66	0.92
10831195--10831223	7	4.1	7	100	0	58	0	0	27	72	0.85
10831883--10831907	13	1.9	13	100	0	50	48	0	4	48	1.20
10831900--10832480	300	1.9	296	80	7	656	40	9	12	37	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135