genome.fa.s10.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  98  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33582912--33582938	14	1.9	14	100	0	54	51	7	37	3	1.48
33591318--33591368	4	12.8	4	100	0	102	0	23	0	76	0.79
33600163--33600548	193	2.0	192	97	0	727	33	26	19	20	1.97
33606018--33606073	29	1.9	28	85	7	76	10	17	1	69	1.26
33616195--33616237	20	2.2	19	87	4	59	4	18	0	76	0.95
33617262--33617306	12	3.3	14	84	12	58	2	31	0	66	1.04
33623016--33623185	52	3.0	59	77	14	169	31	20	15	32	1.94
33623082--33623268	52	3.6	52	86	2	268	35	22	13	27	1.93
33623520--33623544	12	2.1	12	100	0	50	44	8	0	48	1.32
33625539--33625563	13	1.9	13	100	0	50	24	16	12	48	1.79
33633936--33634223	53	5.6	53	79	10	321	34	20	16	29	1.94
33634078--33634164	44	2.0	44	88	0	129	35	19	20	24	1.96
33634026--33634217	97	2.0	95	89	2	294	33	19	18	28	1.95
33642632--33642679	23	2.1	22	84	3	60	58	0	4	37	1.18
33657932--33657983	24	2.1	25	89	3	79	26	15	5	51	1.65
33687096--33687136	12	3.4	12	81	18	50	0	34	0	65	0.93
33696435--33696594	79	2.0	79	87	2	232	26	20	23	29	1.99
33696438--33696591	40	3.9	40	77	5	170	27	18	23	30	1.98
33712290--33712324	11	3.2	11	91	0	52	31	17	11	40	1.85
33720564--33720597	2	17.0	2	87	0	50	44	0	5	50	1.26
33720564--33720607	6	7.3	6	92	0	52	40	2	9	47	1.48
33722967--33723057	45	2.0	45	95	2	166	62	2	19	15	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33723489--33723616	42	3.1	42	80	6	118	21	25	13	39	1.90
33723560--33723723	41	4.0	41	82	6	172	21	22	17	38	1.93
33725406--33725609	40	5.1	40	81	3	203	22	19	19	38	1.93
33725455--33725609	81	1.9	80	84	1	202	21	19	19	39	1.93
33732431--33732470	17	2.5	17	88	8	57	0	20	0	80	0.72
33732661--33732690	2	15.0	2	100	0	60	50	0	0	50	1.00
33747121--33747198	38	2.1	38	100	0	156	28	15	19	37	1.92
33750585--33750623	20	1.9	21	89	5	62	2	30	2	64	1.21
33752372--33752426	25	2.2	25	81	18	62	70	5	12	10	1.31
33765989--33766013	13	1.9	13	100	0	50	24	16	12	48	1.79
33775183--33775322	67	2.1	67	87	2	210	27	25	17	29	1.97
33778111--33778217	33	3.3	32	83	7	110	19	14	14	50	1.78
33778141--33778269	33	4.0	33	82	2	145	20	16	13	49	1.79
33781743--33781805	25	2.5	25	86	0	90	33	1	3	61	1.21
33786834--33786858	1	25.0	1	100	0	50	100	0	0	0	0.00
33787683--33787738	27	2.1	27	90	3	87	21	16	7	55	1.64
33788249--33788296	18	2.7	18	75	12	53	37	14	6	41	1.71
33790255--33790391	60	2.3	60	84	2	168	35	21	3	40	1.71
33790261--33790406	30	4.9	29	78	8	141	36	21	2	39	1.65
33790284--33790471	59	3.2	59	78	11	147	34	25	2	38	1.70
33790394--33790485	29	3.1	29	73	13	89	34	28	3	33	1.74
33790404--33790496	30	3.1	30	72	14	93	32	25	3	38	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33790362--33790502	59	2.4	60	85	5	189	32	28	2	36	1.72
33790730--33790913	96	1.9	98	83	4	239	27	19	15	38	1.91
33795828--33795880	26	2.0	26	92	0	88	39	26	11	22	1.88
33797780--33797817	17	2.2	18	90	4	60	52	21	7	18	1.70
33795849--33798665	977	2.9	978	89	2	4226	39	21	14	25	1.91
33803905--33803986	23	3.6	23	74	12	87	31	12	21	34	1.91
33803946--33803997	23	2.3	23	86	6	70	26	17	26	28	1.97
33806574--33806732	28	5.7	28	75	3	151	24	20	10	44	1.83
33806574--33806732	55	2.8	55	84	2	201	24	20	10	44	1.83
33806706--33806747	17	2.6	16	85	7	59	23	14	9	52	1.71
33806649--33806803	73	2.2	73	91	2	251	22	20	11	45	1.83
33806722--33806880	56	2.8	56	86	1	221	25	21	10	43	1.83
33806594--33806859	129	2.1	128	87	3	376	25	20	10	44	1.82
33806722--33806859	28	4.9	28	81	3	161	24	21	9	44	1.81
33807538--33807571	14	2.4	14	100	0	68	29	20	20	29	1.98
33807703--33807740	13	2.9	13	84	11	51	7	18	2	71	1.23
33809311--33809364	25	2.2	25	89	0	81	44	16	5	33	1.71
33810017--33810139	27	4.4	28	79	10	94	24	22	8	43	1.82
33810059--33810264	56	3.6	56	85	6	240	24	21	9	44	1.81
33810050--33810264	28	7.7	28	75	4	141	24	21	8	44	1.81
33810173--33810353	100	1.8	100	81	2	229	26	19	8	45	1.79
33810197--33810336	72	1.9	72	86	0	199	28	17	7	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33810256--33810397	28	5.2	28	75	13	118	28	19	9	42	1.82
33810318--33810399	27	3.0	27	80	8	87	29	20	8	41	1.82
33811232--33811260	5	5.8	5	100	0	58	17	20	0	62	1.33
33814944--33815018	26	2.9	25	80	7	87	38	21	13	26	1.90
33814940--33815029	27	3.4	25	76	10	81	42	17	14	25	1.87
33820526--33820629	10	9.5	10	69	18	57	38	22	3	35	1.72
33820480--33820625	68	2.2	68	85	3	188	39	21	5	34	1.76
33820526--33820629	20	4.8	21	69	20	70	38	22	3	35	1.72
33820622--33820735	23	5.0	23	86	1	158	47	14	7	31	1.70
33821136--33821205	36	1.9	36	94	0	122	34	25	10	30	1.89
33824669--33824709	18	2.3	18	86	0	55	17	36	14	31	1.90
33833022--33833073	22	2.4	21	78	15	52	61	7	0	30	1.24
33838952--33839002	21	2.4	21	83	3	57	7	29	0	62	1.23
33840369--33840461	23	4.1	23	90	4	136	49	18	2	30	1.59
33840369--33840461	46	2.0	46	91	2	152	49	18	2	30	1.59
33840850--33840929	36	2.2	36	86	0	106	35	22	11	31	1.89
33840919--33841070	23	6.6	23	87	0	196	49	15	4	30	1.64
33842137--33842196	21	2.9	22	80	9	54	15	28	18	38	1.91
33842205--33842259	21	2.5	22	80	11	69	18	36	21	23	1.95
33843385--33843453	32	2.2	32	91	0	111	27	1	24	46	1.61
33843400--33843453	18	3.2	18	70	20	62	24	1	24	50	1.60
33843396--33843459	32	2.0	32	100	0	128	21	3	25	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33855911--33855957	17	2.7	18	87	12	64	0	23	0	76	0.78
33867910--33867963	21	2.5	22	84	3	65	14	31	24	29	1.95
33873921--33874166	127	1.9	127	91	0	402	21	17	23	36	1.95
33873945--33874212	127	2.1	127	82	5	310	24	19	22	33	1.97
33876553--33876625	38	1.9	38	97	0	137	28	23	8	39	1.83
33878595--33878682	38	2.3	39	82	7	119	31	13	22	31	1.93
33878702--33878960	126	2.0	127	90	0	421	19	16	27	36	1.93
33880190--33880224	18	1.9	18	94	0	61	5	14	28	51	1.65
33881328--33881404	38	2.0	38	92	0	127	25	22	10	41	1.85
33885991--33886063	38	1.9	38	91	0	119	28	20	9	41	1.84
33888019--33888104	38	2.3	38	84	6	104	33	13	18	33	1.91
33888040--33888112	38	2.0	37	83	5	94	36	13	16	32	1.88
33889354--33889398	17	2.6	17	96	0	81	48	15	24	11	1.77
33890371--33890419	17	2.9	17	78	0	53	48	12	20	18	1.79
33893673--33893760	38	2.3	38	81	9	101	30	14	25	29	1.95
33901266--33901328	29	2.3	27	81	8	72	50	28	6	14	1.67
33904522--33904588	27	2.4	27	82	7	73	46	20	13	19	1.83
33904638--33904686	20	2.6	20	73	20	52	10	16	44	28	1.80
33914520--33914560	17	2.4	18	80	19	52	14	17	14	53	1.73
33915242--33915325	41	2.0	41	97	0	159	34	9	17	38	1.83
33921526--33921611	37	2.3	37	85	0	109	22	17	30	30	1.96
33924390--33924435	23	2.0	22	88	12	67	47	19	2	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33930455--33930495	17	2.4	17	84	15	50	58	12	14	14	1.63
33940860--33940960	50	2.0	50	98	0	193	45	12	11	29	1.78
33944441--33944573	69	1.9	69	93	0	230	48	13	3	34	1.61
33944436--33944566	23	5.7	23	89	0	199	48	13	3	33	1.61
33946347--33946388	21	2.1	19	91	8	66	0	19	0	80	0.70
33947137--33947177	21	2.0	21	85	9	57	2	24	14	58	1.49
33960834--33960940	56	1.9	56	80	3	126	30	21	26	21	1.98
33966262--33966328	26	2.6	26	82	0	80	67	7	4	20	1.34
33978964--33979121	80	2.0	81	82	1	192	43	3	23	30	1.69
33985138--33985177	19	2.1	19	86	9	55	20	15	25	40	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135