genome.fa.s10.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  32  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12638284--12638337	24	2.2	24	83	6	65	66	1	1	29	1.12
12638362--12638426	23	2.9	23	80	15	73	66	6	3	24	1.29
12638605--12638651	16	2.9	16	90	0	76	36	8	29	25	1.86
12638821--12638980	58	2.7	59	82	6	202	51	1	2	43	1.25
12659898--12659929	16	2.1	16	94	5	57	68	0	0	31	0.90
12667696--12667744	3	16.3	3	95	0	89	30	0	34	34	1.58
12669457--12669516	17	3.5	17	83	0	66	43	0	3	53	1.17
12670279--12670337	14	4.1	14	73	16	57	44	0	3	52	1.17
12671510--12671621	30	3.7	30	78	16	115	39	22	1	36	1.65
12677003--12677125	6	20.5	6	79	17	116	82	0	17	0	0.66
12677003--12677125	1	123.0	1	65	0	57	82	0	17	0	0.66
12677003--12677125	13	10.2	12	76	20	116	82	0	17	0	0.66
12677003--12677125	27	4.5	27	81	9	135	82	0	17	0	0.66
12678133--12678336	50	4.1	50	71	15	161	42	19	22	16	1.89
12678142--12678371	49	4.6	49	72	12	191	42	17	23	15	1.88
12678031--12678493	149	3.1	149	82	4	558	42	18	23	14	1.88
12678890--12679978	206	5.3	206	88	0	1507	34	19	22	22	1.96
12678890--12679978	413	2.6	411	87	1	1552	34	19	22	22	1.96
12680292--12680351	17	3.5	17	88	0	75	41	0	3	55	1.16
12682284--12682385	30	3.4	30	78	6	109	39	19	4	36	1.73
12682284--12682414	59	2.2	59	83	5	158	37	22	5	34	1.77
12682309--12682414	29	3.6	29	74	12	99	35	24	6	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12684210--12684257	22	2.1	22	88	3	69	72	4	8	14	1.23
12685074--12685116	19	2.3	19	84	8	52	58	4	0	37	1.19
12686647--12686683	18	2.1	18	89	0	56	24	27	0	48	1.51
12686980--12687015	18	2.1	18	89	5	56	33	25	0	41	1.55
12687319--12688173	424	2.0	426	97	1	1606	34	11	5	48	1.63
12690775--12690873	23	4.3	22	89	7	128	39	23	21	16	1.92
12690775--12690873	46	2.2	45	89	7	146	39	23	21	16	1.92
12690936--12690983	24	1.9	26	84	16	66	31	22	0	45	1.53
12697211--12697309	48	2.1	48	94	0	171	45	13	8	33	1.72
12704416--12704494	40	2.0	40	89	0	122	32	3	8	54	1.49
12704428--12704494	22	3.2	22	66	23	54	37	4	7	50	1.51
12705731--12705759	5	6.0	5	92	8	51	20	0	0	79	0.74
12705731--12705759	14	2.0	15	93	6	51	20	0	0	79	0.74
12706679--12706711	16	2.1	16	94	0	57	15	12	6	66	1.42
12710956--12711251	38	7.8	38	75	10	246	37	27	19	15	1.92
12710956--12711268	76	4.1	76	78	4	335	38	26	19	15	1.92
12710958--12711254	114	2.6	115	81	6	334	38	26	19	15	1.91
12712336--12712368	14	2.2	16	89	10	52	66	6	0	27	1.15
12733058--12733087	5	6.0	5	92	0	51	40	3	0	56	1.16
12733786--12733851	28	2.3	29	77	20	75	62	0	3	34	1.11
12733785--12733824	20	2.0	20	90	9	64	57	0	2	40	1.12
12733784--12733845	9	6.7	9	77	18	65	61	0	1	37	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12735368--12735489	31	3.9	31	77	4	129	37	13	18	29	1.90
12736724--12736773	6	8.3	6	90	0	82	0	18	36	46	1.49
12740808--12740859	2	26.0	2	100	0	104	0	50	0	50	1.00
12743707--12743766	21	2.8	20	75	9	57	50	8	3	38	1.49
12748728--12748827	53	1.9	52	85	2	137	62	6	1	31	1.26
12748747--12748829	24	3.2	25	72	22	82	57	4	1	36	1.28
12748747--12748829	30	3.1	27	74	20	84	57	4	1	36	1.28
12751581--12751624	2	22.0	2	100	0	88	50	0	0	50	1.00
12752075--12752126	23	2.3	23	83	6	61	48	1	11	38	1.51
12753945--12753985	20	2.1	20	95	4	75	41	2	0	56	1.13
12758912--12758960	22	2.3	22	89	3	73	40	0	20	38	1.53
12759383--12759440	27	2.3	26	80	11	66	27	10	8	53	1.64
12764772--12764825	25	2.1	25	82	6	63	35	1	3	59	1.26
12770153--12770192	12	3.3	12	86	10	55	52	2	0	45	1.14
12770671--12770812	42	3.4	41	79	11	144	28	14	28	27	1.95
12771158--12771641	49	9.9	49	76	7	430	19	25	17	38	1.93
12773393--12773445	15	3.2	16	77	20	56	1	20	1	75	0.99
12773413--12773445	17	1.9	18	88	11	52	0	21	0	78	0.75
12778418--12778476	18	3.4	16	76	15	55	25	16	44	13	1.85
12785955--12786029	37	2.0	38	84	2	98	56	8	18	17	1.65
12786431--12786480	21	2.4	21	100	0	100	28	28	12	32	1.92
12786879--12786923	6	7.5	6	100	0	90	17	48	0	33	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12789183--12789215	7	4.6	7	96	3	57	72	3	0	24	0.98
12790845--12790989	42	3.5	42	77	2	125	25	3	50	20	1.64
12790901--12790969	21	3.3	20	70	8	57	24	2	50	21	1.62
12790980--12791073	21	4.5	22	64	23	58	28	3	48	19	1.64
12790967--12791389	63	6.8	62	75	8	236	28	6	46	18	1.73
12790984--12791367	189	2.0	189	80	5	427	28	6	46	18	1.74
12791157--12791241	21	4.0	21	65	6	64	25	8	47	18	1.77
12791156--12791389	126	1.9	126	82	1	299	25	6	47	20	1.73
12791524--12791665	63	2.2	63	84	1	185	31	5	42	20	1.75
12791711--12791858	63	2.3	63	80	2	172	32	10	40	16	1.82
12791828--12792068	21	11.5	21	70	8	132	28	3	44	23	1.70
12791828--12792069	42	5.8	41	73	6	173	28	3	44	23	1.71
12792102--12792149	21	2.3	21	82	7	53	29	4	41	25	1.74
12791828--12792149	42	7.7	42	69	10	156	28	4	44	23	1.72
12792017--12792210	84	2.3	84	80	1	219	27	6	45	20	1.75
12792186--12792263	21	3.7	21	65	13	52	33	1	39	25	1.64
12792349--12792416	33	2.0	34	82	2	84	29	1	42	26	1.64
12792250--12792537	159	1.8	159	80	1	353	27	5	43	23	1.77
12792491--12792550	21	2.8	20	77	5	57	25	1	45	28	1.63
12792521--12792561	21	2.0	21	85	0	55	31	2	36	29	1.71
12792532--12792765	63	3.7	63	76	7	224	27	5	45	20	1.75
12792850--12793014	63	2.6	63	74	7	165	24	3	44	27	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12792853--12793014	21	7.7	21	75	5	139	24	3	44	27	1.69
12793039--12793109	21	3.4	21	82	0	70	33	1	35	29	1.67
12793147--12793206	21	2.9	21	82	0	75	26	0	45	28	1.54
12793144--12793213	21	3.3	21	77	0	59	28	2	44	24	1.68
12793337--12793395	21	2.8	21	72	10	57	30	5	40	23	1.76
12793647--12793718	24	3.0	24	85	0	99	25	4	54	16	1.60
12793724--12793778	21	2.6	21	79	0	65	23	5	49	21	1.70
12793731--12793806	21	3.8	18	75	17	62	21	3	52	22	1.63
12793704--12793905	105	1.9	105	80	4	237	25	5	50	18	1.69
12793929--12794101	63	2.8	64	75	8	167	26	4	47	21	1.70
12806426--12806453	14	2.0	14	100	0	56	35	7	0	57	1.26
12808195--12808254	29	2.1	29	93	0	102	23	3	23	50	1.64
12816415--12816450	17	2.1	17	90	10	56	55	0	0	44	0.99
12816599--12816641	6	6.7	6	82	12	50	27	2	0	69	1.00
12816597--12816645	20	2.4	21	76	10	57	28	2	0	69	1.00
12817132--12817172	21	2.0	21	95	0	73	46	24	2	26	1.65
12817458--12817489	14	2.3	14	100	0	64	31	21	28	18	1.97
12836036--12836069	16	2.2	16	89	5	52	29	0	5	64	1.17
12838956--12839076	24	5.0	23	88	6	95	30	28	19	21	1.97
12838989--12839082	24	3.9	24	92	0	152	30	26	19	23	1.98
12840799--12840859	23	2.7	23	82	7	70	18	8	1	72	1.18
12842986--12843083	31	3.2	29	76	11	90	46	10	11	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12842996--12843100	31	3.5	31	75	12	92	46	10	11	31	1.74
12846867--12846907	11	3.9	11	78	12	50	53	0	0	46	1.00
12846866--12846907	20	2.0	21	86	4	59	52	0	0	47	1.00
12847173--12847210	17	2.2	16	90	9	58	39	0	2	57	1.12
12847167--12847228	23	2.7	22	80	11	63	40	0	3	56	1.15
12847917--12847950	17	2.0	17	88	0	50	44	8	5	41	1.60
12849170--12849340	30	5.8	29	76	10	152	36	24	2	35	1.71
12849190--12849344	59	2.6	59	79	6	172	36	25	3	34	1.72
12849204--12849356	30	5.2	28	76	8	112	39	22	3	34	1.71
12849204--12849364	29	5.5	29	76	11	107	37	22	3	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135