genome.fa.s10.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  95  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32269380--32269407	11	2.5	11	100	0	56	35	0	14	50	1.43
32271153--32271240	37	2.4	37	84	1	104	25	15	30	28	1.96
32273202--32273245	22	1.9	24	81	9	56	9	20	4	65	1.38
32279427--32279469	15	3.0	14	83	13	52	32	4	9	53	1.53
32283147--32283242	48	2.0	48	100	0	192	45	18	4	31	1.68
32283631--32283725	36	2.6	36	94	0	163	33	22	17	26	1.96
32283662--32283828	36	4.7	35	82	3	140	35	22	17	25	1.95
32283729--32283934	69	3.0	70	80	11	244	35	21	16	25	1.94
32283698--32283934	36	6.8	36	77	10	206	35	21	17	25	1.95
32291436--32291498	17	3.6	17	82	2	81	49	12	17	20	1.79
32307323--32307430	37	2.9	37	83	5	130	31	25	14	28	1.95
32307452--32307531	38	2.1	37	81	2	97	33	26	10	30	1.89
32311939--32312069	37	3.6	37	79	7	133	31	29	17	22	1.96
32326260--32326313	19	2.9	19	81	10	58	64	7	3	24	1.35
32336897--32336946	24	2.1	23	82	14	57	36	4	6	54	1.44
32342524--32342953	194	2.2	192	80	4	490	27	25	18	28	1.98
32343609--32343647	18	2.1	18	85	9	51	61	15	2	20	1.45
32349202--32349234	7	4.7	7	88	11	50	54	12	0	33	1.37
32352358--32352406	21	2.3	21	96	0	89	38	26	8	26	1.84
32366415--32366465	23	2.3	23	86	10	70	39	5	3	50	1.45
32366550--32366593	22	2.0	22	95	0	79	43	11	9	36	1.72
32372714--32372741	3	9.3	3	100	0	56	32	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32377720--32377764	5	8.8	5	88	11	65	0	15	0	84	0.62
32377719--32377764	11	4.4	11	91	8	78	0	15	0	84	0.62
32377719--32377764	21	2.2	20	92	7	83	0	15	0	84	0.62
32397308--32397364	23	2.5	23	82	5	62	19	26	17	36	1.94
32397410--32397528	57	2.1	57	100	0	238	33	14	3	48	1.60
32397414--32397505	28	3.2	28	68	14	89	33	14	3	48	1.59
32405801--32405864	25	2.6	25	87	2	85	25	21	25	28	1.99
32415180--32415266	45	1.9	45	100	0	174	43	10	14	31	1.79
32420579--32420618	21	1.9	21	89	0	62	20	15	27	37	1.92
32428379--32428417	19	2.1	19	85	9	53	30	5	7	56	1.49
32431328--32431360	13	2.5	13	95	0	57	24	15	39	21	1.91
32431364--32431492	14	9.4	14	64	11	52	24	13	37	24	1.91
32431365--32431441	27	2.9	26	79	9	66	22	11	38	27	1.88
32431439--32431504	28	2.4	28	82	7	80	24	16	37	21	1.93
32431457--32431504	14	3.5	13	77	11	51	25	20	37	16	1.93
32431425--32431504	42	1.9	42	86	0	115	22	17	38	21	1.93
32436616--32436721	24	4.4	24	95	0	185	26	27	23	22	2.00
32440332--32440371	3	13.3	3	89	0	62	35	5	0	60	1.19
32440907--32441392	153	3.2	150	87	5	685	43	2	9	44	1.50
32442438--32442912	238	2.0	236	88	2	700	36	7	15	41	1.74
32452462--32452532	30	2.4	30	80	4	81	40	21	5	32	1.76
32453740--32453918	51	3.5	51	80	4	229	29	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32460870--32460942	26	2.8	26	78	0	74	30	20	21	27	1.98
32462841--32462931	13	6.8	14	77	8	91	32	16	29	20	1.95
32462858--32462931	27	2.8	26	89	2	112	32	14	31	21	1.94
32463400--32463444	18	2.3	18	85	11	54	57	20	4	17	1.56
32465711--32465735	12	2.1	12	100	0	50	24	16	8	52	1.70
32478251--32478277	12	2.2	12	100	0	54	14	7	51	25	1.68
32479079--32479173	48	2.0	48	89	0	145	23	21	12	43	1.86
32478885--32479191	122	2.5	122	87	2	438	20	20	16	42	1.89
32479315--32479373	30	2.0	30	89	0	91	27	23	15	33	1.95
32479251--32479448	105	1.9	105	88	0	297	23	19	18	38	1.93
32490708--32490757	26	2.0	26	88	11	77	62	4	2	32	1.25
32496758--32496858	39	2.6	39	85	1	132	48	11	4	34	1.62
32498685--32498741	29	2.0	29	86	6	80	14	3	24	57	1.52
32502191--32502235	14	3.1	14	83	3	54	17	8	20	53	1.70
32505935--32505969	3	11.7	3	100	0	70	0	65	0	34	0.93
32507817--32507938	58	2.1	58	88	8	178	34	0	16	49	1.46
32515629--32515674	22	1.9	23	83	16	58	39	10	10	39	1.76
32530047--32530578	275	1.9	275	91	1	861	46	5	8	40	1.57
32530047--32530588	138	3.9	138	90	1	831	45	5	8	40	1.59
32530689--32530831	72	2.0	72	95	0	259	34	11	12	40	1.80
32537440--32537529	27	3.3	27	80	0	117	30	18	18	32	1.96
32538491--32538557	26	2.6	26	77	9	75	35	17	2	43	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32538815--32539147	158	2.1	158	85	1	443	30	24	23	22	1.99
32542422--32542474	23	2.2	24	80	3	63	52	16	13	16	1.74
32544666--32544959	43	6.8	43	90	1	374	31	22	11	34	1.89
32544666--32544959	86	3.4	87	89	2	414	31	22	11	34	1.89
32549860--32549889	15	2.0	15	100	0	60	26	26	0	46	1.53
32549876--32549970	43	2.2	43	86	0	136	30	22	10	36	1.88
32549959--32550016	23	2.5	23	97	0	107	32	24	8	34	1.86
32552765--32552831	26	2.6	25	80	15	75	35	19	2	41	1.67
32553094--32553155	25	2.4	26	89	5	99	27	29	19	24	1.98
32553121--32553451	159	2.1	158	85	1	430	29	25	22	22	1.99
32555602--32555725	27	4.6	27	97	0	221	25	16	21	35	1.95
32559108--32559143	17	2.2	17	90	5	56	41	19	5	33	1.75
32561273--32561346	33	2.3	32	81	4	87	35	17	14	32	1.91
32566938--32567863	463	2.0	462	96	0	1717	27	26	15	30	1.96
32586361--32586412	9	6.2	9	78	14	58	71	0	0	28	0.87
32586360--32586411	12	4.2	12	92	2	77	69	0	0	30	0.89
32586360--32586412	21	2.5	22	87	9	74	69	0	0	30	0.88
32587381--32587630	60	4.3	58	80	13	255	38	22	0	38	1.60
32587374--32587660	30	9.7	29	77	13	212	37	23	1	37	1.62
32589040--32589078	19	2.1	19	90	0	60	20	0	0	79	0.73
32590280--32590338	19	3.1	20	78	9	70	18	16	16	47	1.83
32590271--32590338	13	5.2	13	74	15	61	17	16	17	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32594287--32594332	3	15.3	3	100	0	92	67	0	0	32	0.91
32595023--32595076	22	2.4	22	78	9	65	29	22	20	27	1.98
32595132--32595176	18	2.6	18	92	3	74	17	0	22	60	1.37
32595215--32595263	18	2.7	18	77	0	53	30	8	18	42	1.79
32596720--32596751	3	10.7	3	100	0	64	68	0	0	31	0.90
32596957--32596994	11	3.5	11	78	7	51	71	0	5	23	1.07
32597548--32598015	145	3.2	142	80	10	549	45	9	3	40	1.55
32597864--32597927	33	2.0	32	82	8	78	54	6	4	34	1.46
32597978--32598044	23	2.9	22	93	6	107	46	11	1	40	1.50
32597968--32598061	23	4.1	23	84	4	100	48	11	1	38	1.47
32606863--32606920	29	2.0	29	100	0	116	13	13	37	34	1.85
32607063--32607111	24	2.0	26	88	8	75	18	4	38	38	1.70
32617941--32617977	16	2.4	16	86	13	51	64	5	8	21	1.40
32618637--32618688	27	1.9	27	84	0	68	44	5	1	48	1.38
32618635--32619145	149	3.4	146	82	8	613	45	7	3	43	1.51
32619995--32620077	17	4.9	17	90	0	121	36	2	15	45	1.60
32619995--32620094	34	2.9	34	80	5	123	37	4	14	45	1.63
32619998--32620094	51	1.9	51	87	8	144	37	4	13	45	1.63
32620096--32620144	18	2.8	17	81	9	53	24	8	20	46	1.77
32623063--32623116	26	2.1	26	92	0	90	27	25	20	25	1.99
32623106--32623269	37	4.4	38	71	8	124	28	12	23	34	1.92
32624483--32624519	17	2.2	17	90	0	56	51	5	21	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32625199--32625223	12	2.1	12	100	0	50	16	28	0	56	1.41
32627793--32627890	38	2.6	38	77	7	110	28	12	26	32	1.92
32637612--32637653	21	2.0	21	81	9	50	23	9	23	42	1.83
32644276--32644351	15	5.3	14	78	7	55	57	5	11	25	1.54
32644272--32644345	29	2.6	29	82	2	96	59	5	10	24	1.52
32644800--32644833	17	2.1	17	88	5	52	41	5	2	50	1.42
32655483--32655526	20	2.2	20	96	4	81	68	0	13	18	1.22
32656582--32656661	24	3.3	24	94	0	142	23	20	25	31	1.98
32660553--32662341	924	1.9	913	90	2	2801	31	10	22	35	1.88
32680327--32680362	18	2.0	18	88	0	54	30	0	2	66	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135