genome.fa.s10.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  86  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29303995--29304023	15	1.9	15	100	0	58	41	20	6	31	1.79
29315650--29315693	23	2.0	22	86	4	61	38	0	15	45	1.47
29320235--29320334	19	5.3	19	85	0	137	36	26	6	32	1.81
29320629--29320763	45	3.0	45	83	0	153	21	26	21	30	1.98
29321320--29321416	46	2.1	47	90	1	151	29	27	9	32	1.88
29330458--29330496	21	2.0	21	90	10	64	38	0	5	56	1.22
29330458--29330496	19	2.0	18	85	14	51	38	0	5	56	1.22
29349729--29349783	26	2.1	26	86	0	74	29	18	21	30	1.97
29373957--29374007	17	2.9	17	77	13	59	66	0	7	25	1.18
29374224--29374271	15	3.1	15	82	5	69	52	6	20	20	1.68
29378444--29378487	21	2.1	21	87	8	63	15	22	47	13	1.81
29380238--29380543	41	7.4	41	78	7	307	26	28	25	19	1.99
29380238--29380543	127	2.5	122	82	4	346	26	28	25	19	1.99
29381654--29381800	44	3.3	44	87	1	195	12	47	10	29	1.74
29384510--29385458	18	52.7	18	63	17	160	45	3	4	47	1.38
29384340--29384659	111	2.9	112	91	2	513	45	2	4	46	1.38
29384626--29385182	112	5.1	112	79	9	381	45	3	4	46	1.39
29384823--29384969	8	17.8	8	63	17	50	48	1	2	47	1.24
29384784--29384961	50	3.6	48	87	3	151	48	2	3	44	1.35
29384917--29385727	111	7.4	111	75	15	767	43	5	4	46	1.47
29385014--29385391	209	1.8	207	95	2	686	46	2	5	45	1.40
29385765--29385823	30	1.9	31	86	3	84	47	1	1	49	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29385690--29385846	18	9.3	18	68	15	84	46	2	2	48	1.29
29385675--29385827	48	3.1	48	90	2	234	47	2	3	46	1.35
29385875--29385967	8	10.8	8	71	25	57	43	1	4	51	1.28
29385923--29385968	22	2.2	20	88	7	65	45	0	2	52	1.13
29385889--29385967	30	2.6	29	82	9	97	41	1	5	51	1.31
29391482--29391621	65	2.1	66	90	1	219	45	17	21	15	1.85
29391623--29391675	21	2.5	21	93	0	88	32	16	47	3	1.65
29391877--29391905	15	1.9	15	100	0	58	13	3	34	48	1.60
29391980--29392071	43	2.1	43	95	0	166	28	21	31	18	1.97
29392074--29392102	15	1.9	15	100	0	58	13	3	34	48	1.60
29394783--29394853	29	2.4	29	86	4	99	33	15	18	32	1.92
29394918--29394988	28	2.5	28	81	2	88	26	14	23	35	1.93
29395005--29395081	28	2.7	27	84	7	100	16	18	27	37	1.92
29395006--29395117	56	2.0	56	82	6	138	22	16	25	34	1.95
29395167--29395541	189	2.0	189	95	1	671	33	19	23	23	1.97
29399139--29399194	28	2.0	28	85	0	76	44	1	1	51	1.22
29415356--29415413	29	2.0	30	82	3	73	37	3	8	50	1.50
29415422--29415468	24	1.9	25	86	4	69	48	4	0	46	1.21
29416089--29416135	25	2.0	23	87	8	67	34	0	4	61	1.15
29420119--29420180	15	4.2	14	74	24	56	12	12	0	74	1.08
29420119--29420161	9	5.2	8	86	8	52	11	13	0	74	1.07
29420114--29420185	6	12.7	6	73	25	50	13	11	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29420132--29420161	9	3.3	9	100	0	60	10	10	0	80	0.92
29423914--29423938	8	3.1	8	100	0	50	88	0	0	12	0.53
29424403--29424486	38	2.2	38	87	2	125	64	9	2	23	1.35
29424904--29424941	15	2.4	16	86	4	51	60	2	2	34	1.24
29435080--29435122	13	3.3	13	90	6	61	11	48	11	27	1.74
29435345--29435386	23	1.9	21	85	9	57	30	0	7	61	1.22
29436165--29436318	29	5.3	28	75	13	125	37	26	2	33	1.70
29436168--29436356	58	3.2	57	78	12	152	37	23	2	36	1.69
29436167--29436390	30	7.6	29	77	9	163	37	23	3	35	1.71
29441692--29441725	18	1.9	17	88	5	50	82	2	5	8	0.93
29441701--29441731	14	2.2	14	94	0	53	87	0	3	9	0.66
29454677--29455425	50	15.1	50	79	2	727	32	16	31	19	1.94
29454674--29455418	149	5.0	149	82	2	811	32	16	31	19	1.94
29454677--29455429	99	7.6	100	80	3	712	32	16	31	19	1.94
29454677--29455425	248	3.0	247	81	3	824	32	16	31	19	1.94
29456826--29456901	33	2.2	32	74	19	82	61	6	13	18	1.52
29457429--29457682	30	8.6	30	81	10	251	38	22	1	38	1.62
29457429--29457688	59	4.4	59	80	13	268	38	21	1	38	1.61
29457429--29457685	29	8.8	29	81	11	267	38	21	1	38	1.61
29459455--29459493	21	2.0	20	85	14	55	56	15	12	15	1.68
29471539--29471588	26	1.9	26	84	8	66	26	16	2	56	1.51
29478222--29478263	12	3.5	12	81	12	59	76	2	16	4	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29478216--29478271	24	2.3	24	96	0	103	71	5	19	3	1.21
29482184--29482239	28	2.0	29	96	3	105	32	0	14	53	1.41
29485816--29485854	17	2.3	17	86	8	53	17	12	23	46	1.83
29487793--29487917	58	2.2	58	77	15	134	40	2	1	55	1.23
29492537--29492855	87	3.7	86	80	7	335	26	15	25	33	1.95
29492537--29492797	87	3.0	86	86	2	357	27	14	24	32	1.95
29492525--29492850	170	1.9	173	82	5	410	26	14	24	33	1.94
29495113--29495154	18	2.3	19	88	12	61	69	4	0	26	1.08
29511202--29511337	72	1.9	70	89	3	209	31	20	17	30	1.96
29515591--29515620	2	15.0	2	100	0	60	50	0	0	50	1.00
29516482--29516622	72	2.0	72	85	0	192	34	19	17	29	1.94
29528232--29528256	13	1.9	13	100	0	50	48	16	8	28	1.74
29532384--29532680	124	2.4	125	87	3	404	23	18	17	40	1.91
29532574--29532749	77	2.3	77	88	2	255	21	19	16	42	1.89
29532656--29532862	108	1.9	110	84	4	276	22	20	16	40	1.91
29532762--29533113	124	2.8	124	87	1	501	22	20	17	39	1.93
29533003--29533189	76	2.5	76	90	0	284	21	20	19	38	1.93
29533079--29533313	124	1.9	124	91	1	382	22	20	17	39	1.93
29533193--29533389	76	2.6	76	97	0	367	22	19	18	39	1.92
29533271--29533514	124	2.0	124	86	1	346	23	19	16	40	1.91
29532886--29533513	200	3.1	200	87	1	875	22	20	18	39	1.92
29533764--29534054	49	6.0	49	74	6	259	18	26	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29533810--29533991	97	1.9	97	83	4	242	18	25	19	36	1.95
29533766--29534040	146	1.9	146	80	4	322	19	26	18	36	1.95
29534916--29534949	18	2.0	18	88	11	54	0	11	0	88	0.52
29534894--29534949	22	2.5	22	82	5	69	1	17	0	80	0.80
29535544--29535596	25	2.1	25	92	0	88	26	18	13	41	1.87
29535826--29535868	5	9.0	5	84	5	54	0	18	2	79	0.85
29535819--29535875	28	2.0	29	86	3	80	0	19	7	73	1.05
29535927--29535982	21	2.7	21	86	5	78	7	16	0	76	0.99
29535914--29535969	14	4.3	14	80	11	66	5	16	0	78	0.92
29535925--29535991	21	3.1	21	79	10	75	5	17	0	76	0.99
29540160--29540321	30	5.4	29	71	14	116	32	5	29	32	1.80
29540165--29540370	90	2.3	90	80	9	217	33	4	27	34	1.78
29541100--29541129	2	15.0	2	92	0	51	46	0	3	50	1.18
29541156--29541198	23	1.9	22	85	4	59	37	0	18	44	1.50
29543138--29543176	21	2.0	20	85	10	53	33	7	0	58	1.26
29545837--29545891	25	2.2	25	81	12	60	67	5	7	20	1.35
29547816--29548560	252	3.0	252	99	0	1472	34	15	16	33	1.90
29549537--29550211	334	2.0	336	97	0	1282	34	18	16	30	1.93
29550925--29550978	19	3.0	18	77	17	58	70	5	0	24	1.08
29556499--29556916	209	2.0	209	100	0	836	39	17	12	30	1.87
29574961--29575001	22	1.9	22	90	5	66	31	12	7	48	1.68
29596329--29596392	30	2.1	30	82	0	74	31	6	28	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29602881--29603099	50	4.3	50	82	8	257	34	14	11	39	1.83
29603313--29603493	91	2.0	91	86	4	258	34	19	20	24	1.96
29605410--29605511	47	2.1	47	79	13	111	34	24	16	24	1.95
29620410--29620436	5	5.4	5	100	0	54	18	0	0	81	0.69
29642421--29644255	921	2.0	908	96	2	3419	27	18	17	36	1.93
29658616--29658669	12	4.3	12	80	20	58	1	24	0	74	0.92
29658615--29658669	18	2.9	18	77	22	60	1	23	0	74	0.91
29669198--29669320	51	2.4	51	93	0	210	39	16	9	34	1.81
29679674--29679720	15	2.8	17	81	15	62	6	21	0	72	1.07
29679642--29679713	24	3.0	23	78	11	74	11	25	1	62	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135