genome.fa.s2.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  100  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17873071--17873149	31	2.5	31	79	0	95	41	29	1	27	1.64
17874631--17874669	19	2.2	17	86	9	51	7	7	2	82	0.94
17874877--17874909	17	1.9	17	93	0	57	33	3	6	57	1.38
17876349--17876382	9	3.9	9	88	7	52	82	0	0	17	0.67
17876349--17876381	17	1.9	17	93	0	57	81	0	0	18	0.68
17883559--17883599	20	2.0	20	85	0	55	29	17	2	51	1.58
17888503--17888550	19	2.6	19	83	9	55	79	8	8	4	1.06
17889815--17890026	49	4.4	47	81	7	237	31	14	14	40	1.85
17889815--17890016	96	2.1	98	83	5	250	31	14	13	39	1.86
17890407--17890501	47	2.0	47	95	0	172	46	13	15	24	1.82
17891538--17891587	22	2.3	22	83	10	59	32	18	6	44	1.74
17892564--17892648	31	2.8	32	78	8	81	38	32	3	24	1.73
17902544--17902573	12	2.5	12	94	0	51	16	6	6	70	1.31
17903188--17903252	23	2.9	23	93	2	105	30	4	9	55	1.52
17903190--17903261	23	3.3	22	88	5	67	30	5	9	54	1.56
17903209--17903339	55	2.4	55	87	1	192	29	5	10	54	1.57
17903310--17903358	20	2.5	20	79	0	62	24	4	12	59	1.50
17903288--17903370	32	2.6	32	88	1	112	30	3	9	56	1.48
17903232--17903428	87	2.2	86	84	7	236	27	5	11	54	1.58
17903351--17903410	23	2.8	22	85	7	79	25	5	11	58	1.53
17903395--17903423	12	2.3	13	94	5	51	20	6	13	58	1.58
17903406--17903465	20	2.9	21	76	16	70	30	6	8	55	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17903320--17903527	111	1.9	111	87	4	312	27	6	11	55	1.59
17903408--17903450	22	1.9	23	90	4	70	30	6	9	53	1.59
17903406--17903521	20	5.8	20	69	12	60	28	6	9	56	1.55
17903209--17903481	143	1.9	142	84	3	361	28	5	11	54	1.59
17903319--17903575	56	4.7	54	82	6	286	27	6	11	54	1.60
17903321--17903590	111	2.4	111	79	12	288	27	6	11	54	1.59
17903642--17903680	19	2.1	19	90	0	60	28	5	12	53	1.60
17903649--17903710	24	2.6	24	87	7	90	32	3	11	53	1.53
17903794--17903898	18	5.3	20	67	24	55	34	4	9	51	1.56
17903827--17903945	18	6.4	18	68	17	75	35	5	11	47	1.62
17909822--17909855	7	4.6	7	89	10	50	85	0	2	11	0.71
17911269--17911757	42	11.6	43	82	6	556	27	14	20	38	1.91
17911269--17911780	85	6.1	86	79	7	498	26	13	20	38	1.90
17911269--17911779	127	4.0	125	82	6	536	27	13	20	38	1.90
17917037--17917084	19	2.5	19	80	9	53	20	2	37	39	1.65
17917102--17917166	19	3.4	19	93	0	103	15	3	41	40	1.63
17919217--17919430	119	1.8	118	87	5	324	30	8	18	42	1.80
17921022--17921046	2	12.5	2	100	0	50	52	0	0	48	1.00
17932223--17932247	12	2.1	12	100	0	50	32	0	0	68	0.90
17932211--17932286	39	2.1	37	80	14	86	36	1	1	60	1.13
17932216--17932303	37	2.3	38	80	14	94	36	3	1	59	1.22
17941941--17942040	51	2.0	51	87	0	146	23	18	11	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17950114--17950546	161	2.7	161	83	4	532	33	10	13	42	1.79
17950397--17950830	144	3.0	141	80	7	491	31	9	15	43	1.79
17950682--17952125	161	9.0	162	78	8	1185	31	8	16	43	1.78
17950114--17951971	642	2.9	636	77	9	1789	31	9	15	43	1.79
17950682--17951972	481	2.7	476	79	7	1372	31	8	16	43	1.78
17953118--17953161	19	2.3	19	80	0	52	40	2	4	52	1.34
17953351--17953420	33	2.1	34	89	7	108	37	20	17	25	1.94
17968011--17968324	134	2.3	133	82	3	351	37	20	13	29	1.90
17969587--17969611	2	12.5	2	100	0	50	48	0	0	52	1.00
17969971--17970557	202	2.9	202	84	4	704	31	14	12	41	1.83
17971811--17971843	11	3.0	11	100	0	66	27	27	0	45	1.54
17977319--17977377	21	2.8	21	94	2	91	72	3	3	20	1.13
17977327--17977377	21	2.4	21	100	0	102	70	3	3	21	1.20
17977818--17977864	19	2.4	19	80	13	51	55	2	2	40	1.24
18001202--18001258	20	2.6	23	86	10	75	63	0	8	28	1.24
18001227--18001264	20	1.9	20	88	0	58	63	2	2	31	1.22
18001259--18001344	18	4.9	17	75	16	79	54	6	6	31	1.54
18001251--18001366	51	2.3	50	92	1	187	56	6	6	30	1.49
18002221--18002602	190	2.0	191	90	0	595	32	16	13	36	1.88
18003120--18003144	13	1.9	13	100	0	50	8	8	16	68	1.38
18005898--18005980	41	2.0	42	81	15	100	14	14	0	71	1.16
18005934--18006002	18	4.0	16	71	19	50	15	11	0	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18005930--18006002	26	2.7	28	75	17	75	16	12	0	71	1.15
18006429--18006472	20	2.2	20	100	0	88	36	29	4	29	1.77
18006468--18006525	17	3.3	17	77	20	57	44	34	1	18	1.60
18006416--18006580	20	9.0	19	76	15	84	42	31	2	23	1.67
18006622--18006691	28	2.6	27	76	2	77	51	34	2	11	1.53
18006970--18007060	18	5.0	18	78	9	96	46	37	0	16	1.47
18006973--18007060	36	2.4	36	86	1	122	47	36	0	15	1.46
18008009--18008120	19	5.9	19	69	18	81	53	8	0	37	1.37
18008037--18008110	30	2.5	30	80	8	87	54	6	1	37	1.36
18008057--18008109	11	5.2	11	76	21	53	54	5	1	37	1.35
18008068--18008127	18	3.3	18	83	4	77	56	5	1	36	1.31
18008004--18008121	58	2.0	58	80	9	134	51	9	0	38	1.40
18008009--18008182	19	9.3	18	67	19	72	55	8	2	34	1.42
18008151--18008209	19	3.2	18	85	9	66	66	10	0	23	1.22
18008305--18008350	20	2.3	20	88	7	67	56	4	4	34	1.39
18008429--18008499	19	3.9	18	72	7	63	36	4	4	54	1.39
18008511--18008555	20	2.2	20	88	4	63	22	2	4	71	1.15
18008501--18008584	21	4.0	21	69	7	55	33	2	2	61	1.21
18008616--18008701	18	4.8	18	68	16	63	39	1	8	51	1.39
18008617--18008703	27	3.3	25	81	9	102	41	1	8	49	1.40
18009606--18009657	27	1.9	27	88	0	77	51	0	13	34	1.41
18011755--18011790	16	2.2	17	90	5	56	72	0	5	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18011755--18011836	39	2.1	39	84	13	107	69	3	4	21	1.23
18033523--18034004	143	3.4	142	72	8	361	40	12	13	34	1.82
18034107--18034165	10	5.6	11	75	15	54	25	6	20	47	1.74
18034107--18034166	20	2.9	21	80	9	70	25	8	20	46	1.78
18035242--18035297	28	2.0	28	85	0	76	66	1	3	28	1.19
18036497--18036653	68	2.3	68	87	0	233	35	8	10	45	1.69
18039755--18039806	24	2.2	24	82	6	61	51	17	5	25	1.67
18040556--18041069	65	8.0	65	77	10	360	42	11	11	35	1.76
18040556--18040895	131	2.6	131	87	4	460	43	11	10	34	1.74
18040556--18040895	66	5.3	63	83	7	391	43	11	10	34	1.74
18040907--18041055	63	2.3	63	82	6	165	35	12	14	38	1.83
18040947--18041145	63	3.2	62	77	5	177	42	7	11	38	1.70
18041653--18041915	144	1.8	143	80	9	320	31	12	13	42	1.82
18042493--18042541	25	2.0	25	83	0	62	67	16	8	8	1.40
18043403--18043493	7	13.7	7	70	19	54	41	28	3	26	1.71
18043401--18043442	21	2.0	21	90	0	66	40	26	2	30	1.69
18043403--18043493	26	3.5	25	74	17	78	41	28	3	26	1.71
18043373--18043514	13	10.7	13	70	13	69	42	32	2	23	1.66
18043495--18043566	7	10.4	7	75	11	60	43	37	1	18	1.59
18043507--18043581	21	3.7	21	79	13	68	40	38	2	18	1.65
18044014--18044048	18	2.0	17	88	5	52	82	0	17	0	0.66
18048510--18048804	158	1.9	158	99	0	581	35	13	16	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18054335--18054364	15	2.0	15	93	0	51	30	16	13	40	1.87
18067830--18067917	19	4.9	18	77	13	76	77	2	10	10	1.08
18067874--18067920	11	4.5	11	89	10	55	76	0	10	12	1.02
18067830--18067917	9	9.8	9	72	18	76	77	2	10	10	1.08
18067846--18067917	19	3.9	19	80	10	87	77	1	11	9	1.05
18067864--18067928	11	6.4	10	77	15	53	76	0	13	9	1.00
18070369--18070395	14	1.9	14	100	0	54	29	14	14	40	1.86
18070854--18070916	23	2.7	24	72	16	60	36	9	12	41	1.76
18070937--18070990	20	2.6	21	77	13	58	29	1	22	46	1.62
18071029--18071077	9	5.7	9	83	9	66	34	18	8	38	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131