genome.fa.s2.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  4  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497989--498048	14	4.1	14	77	8	57	53	33	0	13	1.40
497993--498102	51	2.2	50	82	9	125	49	34	0	16	1.46
504666--504859	102	1.9	100	90	2	307	41	11	11	35	1.79
512336--512373	16	2.4	17	82	13	53	34	0	10	55	1.34
513429--513458	13	2.3	13	94	0	51	76	0	16	6	0.99
513816--514076	120	2.2	119	82	0	315	45	15	20	18	1.85
513808--514127	120	2.7	119	77	4	311	46	16	19	18	1.85
513899--514252	119	3.0	118	75	8	279	46	16	19	16	1.84
524694--524738	22	2.0	24	86	8	67	66	4	13	15	1.39
525400--525429	8	3.6	8	91	8	51	20	0	0	80	0.72
525400--525430	9	3.6	9	95	4	55	19	0	0	80	0.71
525701--525734	18	1.9	18	88	5	52	67	8	2	20	1.31
536410--536928	259	2.0	259	95	0	923	39	19	15	25	1.91
538189--538263	34	2.2	34	97	2	143	33	14	22	29	1.94
541274--541326	14	3.9	14	78	7	56	49	0	1	49	1.12
541470--541550	37	2.2	38	90	2	128	48	2	1	48	1.23
541471--541569	16	5.9	16	69	21	60	46	3	2	48	1.29
541471--541569	32	3.1	31	75	16	78	46	3	2	48	1.29
544384--544548	90	1.8	91	85	3	235	33	4	16	44	1.69
544680--545049	131	2.8	135	84	5	473	29	9	11	49	1.70
544679--545093	131	3.1	129	78	11	405	29	9	11	49	1.70
553772--553817	21	2.2	21	84	0	56	23	30	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553783--553831	21	2.3	21	85	0	71	22	32	12	32	1.91
562958--563066	56	1.9	56	94	0	191	30	21	13	34	1.92
579983--580021	17	2.3	17	91	8	62	15	2	0	82	0.79
589880--589984	53	2.0	53	96	0	192	37	22	11	28	1.89
590107--590140	16	2.1	16	88	0	50	55	8	5	29	1.54
590390--590415	2	13.0	2	100	0	52	0	50	0	50	1.00
597559--597653	51	1.9	48	85	6	127	29	26	5	38	1.78
597873--597924	27	1.9	27	88	0	77	63	0	3	32	1.12
599112--599155	20	2.2	20	83	4	52	45	0	2	52	1.13
600292--600344	17	3.0	18	80	5	63	30	0	0	69	0.88
620311--620728	61	6.9	59	82	7	475	38	9	4	47	1.56
620517--620556	16	2.4	17	87	8	55	52	0	2	45	1.14
620767--620814	24	2.1	21	85	11	60	79	8	0	12	0.94
621229--621275	19	2.4	20	85	3	60	48	6	12	31	1.66
621226--621275	20	2.6	19	81	6	66	48	8	12	32	1.69
621358--621403	23	2.0	24	82	4	58	65	10	6	17	1.45
621966--622004	5	7.8	5	91	8	62	84	0	0	15	0.62
621966--622007	21	2.0	21	95	0	75	83	0	0	16	0.65
621966--622007	16	2.6	17	88	7	61	83	0	0	16	0.65
622892--622917	3	8.7	3	100	0	52	69	0	0	30	0.89
623178--623211	2	17.0	2	100	0	68	50	0	0	50	1.00
624831--624904	20	3.5	20	76	18	71	0	21	1	77	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624826--624897	10	7.0	10	70	22	51	0	25	1	73	0.91
624831--624898	11	6.5	11	70	14	54	0	22	1	76	0.87
627186--627232	3	15.7	3	100	0	94	0	0	65	34	0.93
631049--631073	2	12.5	2	100	0	50	48	0	0	52	1.00
633394--633421	2	14.0	2	100	0	56	50	0	0	50	1.00
649292--649334	21	2.0	22	82	13	54	27	2	0	69	1.00
649352--649411	15	3.9	15	73	16	50	51	1	1	45	1.21
649373--649439	30	2.3	29	76	20	77	50	0	2	46	1.16
649400--649450	11	4.7	11	74	13	52	47	0	1	50	1.12
650382--650423	22	1.9	22	85	9	59	57	0	0	42	0.99
667750--667781	2	16.0	2	100	0	64	50	0	0	50	1.00
669568--669691	60	2.1	60	93	0	212	33	16	27	21	1.95
672289--672319	2	15.5	2	100	0	62	0	48	0	51	1.00
688814--688842	13	2.2	13	100	0	58	31	13	17	37	1.89
703244--703399	82	1.9	82	89	2	242	37	19	14	28	1.91
704438--704507	36	1.9	37	91	2	115	44	20	18	17	1.87
707061--707105	20	2.1	22	92	8	76	60	0	0	40	0.97
707059--707107	21	2.3	23	86	13	77	59	0	0	40	0.98
707122--707191	18	3.7	19	76	14	74	52	0	0	47	1.00
707678--707718	22	2.0	20	85	9	55	51	0	0	48	1.00
708818--708847	6	5.0	6	100	0	60	83	0	0	16	0.65
709019--709078	22	2.8	21	75	10	59	55	0	1	43	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719860--719890	15	2.0	16	93	6	55	45	6	3	45	1.45
733672--733712	18	2.4	17	87	4	55	17	0	2	80	0.82
734134--734264	29	4.6	28	70	11	95	48	31	0	19	1.54
734247--734295	8	6.6	8	80	17	52	55	22	0	22	1.44
734247--734295	22	2.2	22	85	0	62	55	22	0	22	1.44
735949--735986	19	2.0	19	90	10	60	52	7	5	34	1.53
740902--740927	1	26.0	1	100	0	52	100	0	0	0	0.00
743103--743466	109	3.3	109	80	6	396	23	18	17	40	1.91
743394--743535	74	1.9	74	88	2	214	28	22	16	33	1.95
743574--743810	111	2.1	112	83	6	286	24	20	16	37	1.93
743602--744116	197	2.6	198	81	4	583	24	20	16	38	1.92
744099--744143	22	2.0	22	95	0	81	26	24	20	28	1.99
744875--744901	14	1.9	14	100	0	54	81	11	7	0	0.87
746098--746154	15	3.9	15	81	9	55	56	33	0	10	1.34
746105--746160	15	3.9	14	85	4	58	55	32	0	12	1.37
746119--746161	15	2.9	15	86	3	61	55	27	0	16	1.41
751805--751843	18	2.2	17	86	4	51	23	12	5	58	1.54
752233--752282	16	3.1	17	85	8	68	66	0	2	32	1.03
752233--752279	17	2.6	17	86	6	58	63	0	2	34	1.06
755142--755184	22	2.0	22	85	0	59	13	13	20	51	1.76
772554--772583	7	4.3	7	91	0	51	13	43	0	43	1.43
778505--778553	25	2.0	25	91	0	80	57	14	4	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780478--780549	36	2.0	36	97	0	135	26	16	9	47	1.78
781879--781925	3	15.7	3	100	0	94	68	0	0	31	0.90
782118--782188	28	2.4	29	80	17	85	49	33	0	16	1.47
783271--783329	20	3.0	20	92	0	91	20	30	27	22	1.98
783492--783520	3	9.7	3	100	0	58	31	0	0	68	0.89
784014--784084	31	2.3	31	80	4	90	28	23	23	23	2.00
784139--784185	19	2.5	19	82	0	58	29	29	19	21	1.97
784503--784530	1	28.0	1	100	0	56	0	0	0	100	0.00
784750--785189	151	2.9	152	96	0	801	30	14	17	36	1.91
791010--791062	22	2.6	19	80	11	61	47	0	0	52	1.00
791010--791050	22	1.9	21	90	5	64	48	0	0	51	1.00
810498--810527	15	2.0	15	93	0	51	43	3	0	53	1.17
811031--811136	28	3.6	29	73	11	74	21	0	27	50	1.49
811032--811176	14	9.9	14	67	12	60	21	0	29	48	1.50
811513--811562	22	2.3	22	85	0	64	52	8	2	38	1.43
811557--811607	25	2.0	25	82	14	61	70	7	0	21	1.12
812686--812711	3	8.7	3	100	0	52	34	0	0	65	0.93
814059--814108	13	4.2	12	77	12	50	50	0	2	48	1.12
814290--814323	16	2.1	16	88	0	50	61	5	0	32	1.20
828882--828930	17	2.7	18	84	9	64	55	0	0	44	0.99
829845--829908	32	2.0	32	81	6	76	57	9	14	18	1.63
832866--832965	45	2.2	45	85	3	130	22	29	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
834138--834196	5	11.0	5	89	3	64	42	0	3	54	1.17
834149--834196	2	25.0	2	84	16	66	45	0	2	52	1.12
849266--849369	45	2.3	45	89	0	154	36	12	0	50	1.47
849268--849338	21	3.2	21	69	11	61	39	11	1	47	1.48
849919--849952	17	2.0	17	88	0	50	35	0	0	64	0.94
851067--851109	11	3.7	11	79	11	50	69	0	2	27	1.00
851905--851939	7	4.9	7	89	6	52	45	0	0	54	0.99
851904--851939	15	2.5	15	86	4	56	47	0	0	52	1.00
859693--859736	21	2.1	21	87	8	63	50	11	6	31	1.65
863201--863241	7	5.2	8	88	11	59	87	0	0	12	0.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131