genome.fa.s2.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  48  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9935130--9935178	20	2.4	22	77	19	61	51	0	10	38	1.36
9936332--9936361	15	2.0	15	93	0	51	70	3	0	26	1.03
9941267--9941301	18	2.0	17	88	5	52	80	2	2	14	0.95
9941785--9941833	23	2.1	23	85	7	64	14	8	4	73	1.21
9947703--9947763	23	2.6	23	80	14	63	54	1	6	37	1.37
9948946--9948989	10	4.3	10	88	2	61	79	0	20	0	0.73
9956238--9956264	11	2.5	11	100	0	54	37	25	0	37	1.57
9956871--9956915	23	2.0	23	100	0	90	57	8	15	17	1.63
9959298--9959486	43	4.4	43	82	0	162	41	16	12	29	1.85
9959575--9959618	23	1.9	23	95	0	79	45	11	9	34	1.72
9959788--9959826	18	2.2	18	90	0	60	38	12	5	43	1.65
9960042--9960112	22	3.2	22	75	2	70	56	14	4	25	1.56
9960054--9960138	22	3.8	22	78	7	73	51	15	2	30	1.56
9960052--9960264	22	9.4	22	66	15	67	48	15	3	31	1.63
9960055--9960265	91	2.3	90	80	8	241	48	15	3	32	1.62
9960048--9960279	46	5.1	47	77	6	201	47	14	4	33	1.65
9959974--9960279	45	6.8	46	72	9	193	46	14	5	33	1.67
9960500--9960552	23	2.4	21	81	9	52	43	15	7	33	1.74
9961616--9961661	12	3.9	11	86	11	56	2	10	2	84	0.79
9961622--9961669	15	3.1	16	85	11	55	4	6	4	85	0.83
9967507--9967602	49	2.0	49	82	0	120	41	17	8	32	1.79
9971605--9971656	20	2.5	20	84	3	68	17	34	7	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9973122--9973194	7	11.6	7	76	19	72	24	0	27	47	1.52
9973116--9973170	19	2.9	19	78	13	60	20	0	30	49	1.49
9973126--9973170	13	3.5	13	87	6	74	20	0	33	46	1.51
9973126--9973355	18	12.2	19	71	16	90	21	1	32	44	1.62
9973348--9973393	20	2.3	20	82	10	58	13	4	36	45	1.63
9973529--9973601	20	3.7	20	75	0	74	17	2	27	52	1.59
9973609--9973648	20	2.0	21	90	5	64	10	0	42	47	1.37
9973633--9974077	220	2.0	220	100	0	890	37	13	20	28	1.90
9978814--9979279	50	9.2	49	68	16	168	33	12	12	41	1.80
9978865--9979300	150	2.9	152	76	5	373	35	12	12	40	1.80
9979069--9979190	52	2.3	53	81	6	133	35	9	13	42	1.75
9979335--9979436	49	2.1	47	81	3	114	34	12	15	37	1.86
9981314--9981485	62	2.8	60	74	11	154	39	34	3	22	1.71
9981563--9981611	19	2.6	19	80	0	62	42	42	0	14	1.45
9982864--9983538	225	3.1	223	90	4	1025	39	13	7	39	1.73
9988069--9988096	5	5.6	5	100	0	56	17	39	0	42	1.50
9993982--9994011	10	2.8	11	90	10	53	6	20	0	73	1.05
9995669--9995910	6	38.7	6	64	23	56	19	2	32	46	1.63
9995819--9995863	18	2.4	18	88	3	63	13	0	37	48	1.42
9995965--9996005	19	2.2	19	91	8	66	9	0	41	48	1.36
9997328--9997725	145	2.7	146	79	5	414	41	14	13	30	1.84
9998524--9998568	23	2.0	23	86	8	65	33	4	2	60	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9999573--9999833	17	16.1	16	68	23	90	48	2	0	48	1.17
9999590--9999778	22	9.1	21	71	21	116	49	2	0	47	1.15
9999585--9999833	20	13.0	19	68	22	91	48	2	0	48	1.14
9999684--9999759	24	3.2	23	77	19	68	53	1	0	44	1.08
9999732--9999764	14	2.3	15	94	5	59	63	0	0	36	0.95
10000427--10001885	235	6.2	235	71	10	871	50	5	11	32	1.61
10007148--10007695	235	2.3	234	79	7	574	52	6	9	30	1.60
10007859--10008861	232	4.3	230	75	9	716	51	7	9	31	1.62
10009309--10009343	13	2.7	13	95	0	61	54	8	5	31	1.54
10010476--10010547	31	2.3	31	90	4	110	23	8	13	54	1.67
10010357--10010662	157	2.0	151	82	5	364	25	10	13	50	1.74
10010507--10010996	126	3.9	124	71	17	352	26	11	13	48	1.76
10010661--10010955	127	2.3	130	83	6	386	28	12	12	46	1.78
10011653--10012121	236	2.0	236	95	1	843	45	9	14	30	1.76
10012328--10012370	17	2.5	17	92	3	68	86	2	4	6	0.79
10012328--10012370	9	4.9	9	77	5	52	86	2	4	6	0.79
10012635--10012668	14	2.4	14	95	0	59	82	0	17	0	0.67
10013922--10014011	45	2.0	43	83	8	110	35	10	13	41	1.78
10014051--10014091	21	2.0	21	90	0	64	34	2	14	48	1.57
10014097--10014180	43	1.9	43	83	7	107	28	10	16	44	1.81
10014471--10014506	18	1.9	18	88	5	54	33	13	16	36	1.89
10014539--10014598	17	3.6	16	73	10	57	36	11	13	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10017643--10017685	16	2.7	16	96	0	77	32	9	4	53	1.53
10019387--10019422	2	18.0	2	100	0	72	0	50	0	50	1.00
10027827--10027875	24	2.0	24	96	0	89	20	8	22	48	1.75
10028446--10028494	23	2.1	24	88	3	73	63	8	18	10	1.50
10034199--10034465	135	2.0	135	96	0	498	27	11	27	32	1.92
10047993--10048049	28	2.0	28	96	0	105	52	7	22	17	1.68
10048020--10048110	44	2.1	44	91	0	146	51	5	24	18	1.67
10050101--10050149	23	2.1	24	81	11	57	63	8	8	20	1.48
10050348--10050400	20	2.6	21	84	3	81	47	28	0	24	1.52
10061646--10061687	21	2.0	21	86	9	59	83	0	4	11	0.79
10062259--10062313	28	1.9	29	85	10	78	69	1	18	10	1.27
10062929--10063089	50	3.2	50	73	11	139	33	10	17	38	1.84
10062823--10063116	103	2.8	104	80	8	307	33	11	16	39	1.84
10063097--10063410	47	6.7	47	77	5	235	32	9	15	42	1.78
10064369--10064430	27	2.2	30	81	18	80	61	6	17	14	1.53
10066614--10066663	21	2.5	19	90	6	73	48	28	2	22	1.62
10066614--10066764	41	3.8	40	75	9	137	45	28	5	20	1.75
10072951--10073043	41	2.2	40	83	10	116	30	19	10	39	1.85
10072951--10073089	39	3.4	42	80	10	121	31	18	10	38	1.85
10079656--10079750	49	1.9	50	82	2	120	29	12	26	31	1.93
10087277--10087653	7	59.3	6	66	19	101	17	2	36	44	1.61
10087295--10087401	49	2.2	49	89	3	162	13	1	38	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10087465--10087507	13	3.3	13	76	0	50	6	0	41	51	1.29
10087471--10087556	39	2.2	39	83	10	113	12	2	40	44	1.55
10087471--10087654	13	14.2	13	68	9	81	16	2	39	41	1.61
10087517--10087579	32	2.0	32	87	0	90	14	3	38	44	1.61
10087560--10087654	39	2.4	39	82	5	120	21	1	38	38	1.60
10087563--10087653	33	2.8	33	81	1	94	21	1	37	39	1.61
10087380--10087654	7	42.3	7	68	17	105	18	2	36	42	1.63
10087680--10087947	89	3.0	90	93	1	457	33	11	22	33	1.90
10092095--10092122	5	5.6	5	100	0	56	64	0	35	0	0.94
10092095--10092128	15	2.3	15	89	0	50	67	0	32	0	0.91
10101009--10101049	17	2.4	18	84	12	59	36	7	4	51	1.51
10101393--10101417	13	1.9	13	100	0	50	40	12	8	40	1.72
10103743--10103780	16	2.4	17	86	8	53	68	5	10	15	1.36
10105850--10106313	233	2.0	231	92	0	775	27	21	14	36	1.92
10106667--10106695	13	2.1	14	93	6	51	89	0	10	0	0.48
10109814--10109871	23	2.5	23	75	5	64	34	1	3	60	1.24
10109952--10110010	5	11.8	5	77	16	61	81	0	1	16	0.78
10109951--10110013	9	6.4	9	80	20	65	82	0	1	15	0.74
10109980--10110019	18	2.2	18	90	4	62	87	0	5	7	0.66
10110274--10110324	12	4.1	12	80	9	66	39	7	7	45	1.62
10110406--10110451	13	3.4	14	79	11	51	58	0	8	32	1.28
10112888--10112921	15	2.2	16	89	5	52	61	2	32	2	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10113487--10114516	510	2.0	517	81	6	1200	38	7	7	46	1.61
10113232--10114522	128	10.0	129	79	8	1125	38	7	8	45	1.63
10115481--10115515	17	2.1	17	88	0	52	62	0	0	37	0.95
10115470--10115518	24	2.0	24	84	7	64	61	0	0	38	0.96
10121422--10121458	19	1.9	19	89	10	58	24	2	24	48	1.64
10125776--10125808	16	2.1	16	94	0	57	87	12	0	0	0.53
10126892--10127201	58	5.3	58	82	8	378	36	12	6	44	1.69
10127037--10127075	16	2.4	16	86	4	51	41	0	7	51	1.31
10127129--10127273	71	2.0	71	89	6	222	35	11	6	45	1.68
10127186--10127215	14	2.1	14	100	0	60	40	13	6	40	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131