genome.fa.s2.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  54  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11088307--11088358	10	5.4	10	86	11	65	78	0	11	9	0.95
11088307--11088341	11	3.4	11	84	15	56	82	0	8	8	0.83
11088299--11088386	38	2.4	35	82	16	106	75	0	14	10	1.06
11088309--11088388	7	11.0	7	80	17	76	72	0	15	12	1.12
11090092--11090119	13	2.2	13	100	0	56	28	7	21	42	1.79
11090056--11090182	36	3.5	36	81	8	127	31	10	18	40	1.84
11090105--11090148	23	1.9	23	90	0	70	34	4	18	43	1.70
11090219--11090259	18	2.2	19	86	4	57	29	14	21	34	1.93
11090344--11090388	22	2.0	22	86	0	63	26	24	8	40	1.84
11091054--11091115	32	1.9	32	87	6	90	38	11	22	27	1.88
11091953--11092044	43	2.1	44	85	2	123	30	26	13	30	1.93
11092075--11092255	43	4.2	43	79	8	206	29	12	17	41	1.85
11092075--11092255	86	2.1	86	87	4	258	29	12	17	41	1.85
11092285--11092406	37	3.3	37	83	4	140	31	12	14	40	1.83
11092697--11092721	6	4.2	6	100	0	50	32	0	0	68	0.90
11093333--11093380	20	2.4	20	96	0	87	33	8	10	47	1.68
11093383--11093457	19	3.9	19	77	11	73	26	8	13	52	1.68
11093410--11093444	17	2.1	17	94	5	63	28	5	11	54	1.59
11093401--11093458	17	3.2	17	71	17	53	27	6	13	51	1.66
11093455--11093734	24	11.8	24	71	15	138	32	4	8	54	1.51
11093445--11093556	54	2.1	53	80	8	120	30	5	11	52	1.60
11093533--11093641	47	2.3	48	87	6	150	33	2	10	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11093506--11093756	66	3.7	67	82	6	274	32	4	9	54	1.52
11093850--11093899	22	2.2	23	85	3	66	32	10	12	46	1.74
11093864--11093937	35	2.1	36	82	7	89	31	5	12	51	1.61
11095584--11095628	21	2.1	21	84	8	56	26	26	15	31	1.96
11096311--11096341	16	1.9	16	93	0	53	48	3	22	25	1.66
11105889--11106042	81	1.9	81	89	2	238	38	25	4	30	1.76
11107018--11107066	17	2.9	16	80	14	53	38	2	12	46	1.53
11115536--11115589	26	2.0	28	92	7	94	46	3	14	35	1.63
11116352--11116376	13	1.9	13	100	0	50	40	0	8	52	1.31
11124255--11124279	1	25.0	1	100	0	50	100	0	0	0	0.00
11127117--11127193	39	2.0	39	89	0	118	24	2	36	36	1.70
11129951--11129993	3	14.3	3	100	0	86	32	0	0	67	0.91
11131306--11131450	71	2.1	69	92	2	236	22	24	17	35	1.95
11137696--11137729	17	1.9	18	94	5	61	23	0	0	76	0.79
11137771--11137810	20	2.0	20	85	9	55	52	0	0	47	1.00
11139560--11139704	63	2.3	63	85	7	188	38	4	5	51	1.44
11140357--11140391	14	2.5	14	90	0	52	54	0	0	45	0.99
11140344--11140384	14	2.6	16	77	22	50	53	0	0	46	1.00
11144848--11145004	83	1.9	84	89	1	244	45	11	6	36	1.66
11144838--11145012	84	2.1	84	84	4	237	46	10	5	37	1.63
11145022--11145091	35	2.0	35	88	2	106	38	7	10	44	1.65
11145667--11145757	27	3.2	28	71	14	71	45	9	2	42	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11145657--11145743	27	3.2	27	69	15	70	48	8	3	40	1.50
11145776--11145811	17	2.1	18	89	5	56	22	5	19	52	1.66
11148891--11148940	22	2.3	22	96	0	91	44	10	12	34	1.75
11149297--11149334	9	4.2	9	86	10	51	18	2	0	78	0.86
11149298--11149349	19	2.7	19	85	5	70	13	5	0	80	0.88
11149312--11149341	15	1.9	16	93	6	53	13	0	0	86	0.57
11153447--11153482	18	2.1	17	89	5	54	75	0	0	25	0.81
11154421--11154454	16	2.1	17	88	5	52	41	0	2	55	1.15
11164663--11164719	25	2.2	25	96	3	105	54	7	7	31	1.54
11165094--11165297	101	2.0	102	91	0	329	36	16	10	36	1.84
11171074--11171155	4	20.0	4	71	14	60	23	4	2	69	1.20
11171115--11171164	12	4.2	12	80	12	50	22	4	2	72	1.12
11171097--11171198	13	7.8	13	71	24	56	20	5	3	69	1.26
11171630--11171696	30	2.2	31	81	7	75	22	16	11	49	1.78
11188360--11188400	20	2.0	20	90	0	64	19	9	19	51	1.74
11192240--11192294	24	2.3	24	90	0	83	45	29	10	14	1.79
11192375--11192790	170	2.5	169	81	5	439	42	20	13	23	1.88
11192305--11192795	85	5.8	84	75	8	334	41	21	13	24	1.88
11192803--11193057	56	4.5	56	73	4	188	32	23	16	28	1.95
11193268--11193314	19	2.5	19	93	3	78	44	14	12	27	1.82
11195719--11195810	40	2.3	40	81	9	116	21	13	18	46	1.82
11196007--11196041	8	4.1	9	89	10	56	8	0	0	91	0.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11196007--11196041	17	2.1	16	94	5	61	8	0	0	91	0.42
11196082--11196161	4	19.0	4	72	16	56	22	6	1	70	1.17
11196604--11196660	17	3.4	16	74	11	53	7	14	0	78	0.94
11198164--11198226	21	2.8	22	81	11	67	69	4	1	23	1.16
11207663--11207700	20	2.0	20	85	10	53	36	23	7	31	1.84
11209083--11209303	50	4.4	50	81	11	258	29	9	18	42	1.82
11209088--11209304	99	2.2	98	87	4	303	29	10	18	41	1.83
11209318--11209471	44	3.5	44	86	1	211	29	14	16	38	1.89
11209289--11209471	88	2.1	88	89	3	280	28	13	17	40	1.87
11209623--11209658	3	12.0	3	100	0	72	33	0	0	66	0.92
11210039--11210091	21	2.5	21	96	0	97	75	15	3	5	1.13
11211216--11211256	20	2.0	20	85	4	55	63	7	0	29	1.21
11223743--11223779	2	18.5	2	100	0	74	48	0	0	51	1.00
11228128--11228294	91	1.8	91	93	0	289	38	11	10	39	1.75
11230378--11230408	15	2.1	15	100	0	62	80	0	0	19	0.71
11233475--11233508	16	2.1	16	88	5	50	44	2	8	44	1.50
11234297--11234542	129	1.9	129	86	3	352	35	11	10	42	1.75
11236521--11236604	42	2.0	42	97	0	159	25	7	17	50	1.72
11239710--11239752	16	2.7	15	86	10	59	30	2	2	65	1.18
11244142--11244173	17	2.0	17	88	11	50	0	18	0	81	0.70
11252989--11254031	161	6.5	161	80	3	978	33	9	15	41	1.79
11253112--11254004	320	2.8	319	82	4	1057	32	9	15	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11252989--11254014	481	2.1	481	83	2	1263	33	9	15	41	1.79
11254067--11254744	160	4.2	159	80	3	709	32	10	15	41	1.80
11258151--11258181	16	1.9	16	93	0	53	67	3	3	25	1.20
11258297--11258344	18	2.8	16	84	12	60	70	2	2	25	1.09
11258753--11258825	31	2.4	30	86	2	101	45	21	4	28	1.70
11258823--11258856	16	2.1	16	88	0	50	52	23	2	20	1.60
11258847--11258916	15	4.7	15	76	5	61	44	30	5	20	1.74
11259011--11259051	16	2.6	16	92	0	64	51	34	0	14	1.43
11260170--11260215	23	2.0	23	82	0	56	28	4	13	54	1.57
11262768--11262810	21	1.9	24	86	13	65	72	4	4	18	1.20
11266311--11266370	22	2.7	22	84	0	75	41	15	10	33	1.80
11266282--11266366	44	2.0	41	81	6	98	42	12	10	34	1.78
11266310--11266407	42	2.3	45	84	7	123	40	15	9	34	1.79
11266457--11266641	18	10.3	18	83	3	158	46	9	15	28	1.77
11266457--11266641	36	5.2	36	80	1	183	46	9	15	28	1.77
11266557--11266643	9	9.7	9	68	17	56	44	9	16	29	1.78
11266553--11266711	18	9.1	19	80	8	74	43	8	15	33	1.76
11266547--11266708	54	3.1	51	76	6	119	43	8	16	32	1.76
11266839--11266932	46	2.1	46	81	2	109	42	18	7	31	1.78
11266877--11267085	45	4.7	44	71	8	127	43	13	9	34	1.76
11268149--11268199	21	2.4	22	74	9	61	7	19	0	72	1.08
11273080--11273109	11	2.7	11	94	0	51	66	16	0	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11274671--11274713	20	2.2	20	87	8	61	76	2	2	18	1.00
11276407--11276466	17	3.4	17	68	17	50	43	10	13	33	1.77
11276393--11276528	35	3.8	35	82	4	139	44	11	13	30	1.79
11276407--11276558	35	4.3	35	81	5	137	42	11	14	32	1.81
11276421--11276481	18	3.4	18	69	15	54	47	8	13	31	1.71
11276448--11276528	18	4.6	17	72	13	67	45	13	12	28	1.80
11276598--11276675	18	4.3	18	80	0	75	35	10	20	33	1.86
11276618--11276729	36	3.1	36	77	7	93	36	12	17	33	1.88
11276767--11276824	17	3.5	17	85	4	82	44	15	10	29	1.79
11279878--11279903	13	2.0	13	100	0	52	76	0	15	7	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131