genome.fa.s2.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  29  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6863017--6863076	18	3.4	18	80	17	63	21	1	5	71	1.14
6863030--6863075	21	2.2	20	85	11	58	23	2	2	71	1.08
6863210--6863240	13	2.4	13	94	0	53	22	3	0	74	0.96
6863401--6863442	19	2.2	20	91	4	68	21	4	0	73	1.01
6863685--6863726	19	2.2	20	84	16	63	73	2	4	19	1.12
6863685--6863732	18	2.5	19	80	12	55	75	2	6	16	1.11
6864805--6865284	40	11.8	40	73	11	176	41	15	14	28	1.86
6864858--6865559	40	17.7	41	74	8	429	41	16	15	27	1.88
6864858--6865559	120	5.9	118	76	9	477	41	16	15	27	1.88
6864864--6865559	80	8.8	80	76	9	491	41	16	14	27	1.88
6865257--6865314	30	1.9	30	89	6	91	43	12	17	27	1.84
6865219--6865354	70	1.9	70	85	2	184	41	14	16	27	1.88
6865097--6865438	190	1.8	190	81	3	429	43	16	14	25	1.86
6865532--6865583	24	2.2	24	85	0	68	44	9	19	26	1.81
6865554--6865676	40	3.0	40	78	12	137	46	12	13	28	1.78
6866752--6866789	17	2.1	18	85	9	51	28	2	5	63	1.30
6875555--6875647	46	2.0	46	85	4	125	22	10	3	63	1.41
6880857--6880886	13	2.3	13	94	0	51	26	6	10	56	1.57
6882101--6883406	162	8.1	162	75	7	741	33	10	13	42	1.77
6882420--6883174	324	2.3	323	81	2	868	33	9	13	43	1.77
6882101--6883406	486	2.7	481	80	5	1350	33	10	13	42	1.77
6888759--6888802	3	14.7	3	100	0	88	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6893642--6893705	32	2.0	32	87	6	94	46	21	10	20	1.81
6904155--6904196	21	2.0	21	95	0	75	35	4	21	38	1.75
6905196--6905237	15	2.9	14	82	13	50	66	2	4	26	1.23
6906746--6906912	44	3.9	44	77	6	180	22	14	10	52	1.72
6909043--6909098	26	2.2	26	86	0	76	33	14	14	37	1.86
6910187--6910341	84	1.9	84	87	4	233	43	10	15	30	1.80
6910390--6910419	16	1.9	15	93	6	51	93	0	6	0	0.35
6910390--6910422	17	2.0	16	94	5	57	90	0	9	0	0.44
6911715--6911998	103	2.6	104	82	9	306	42	13	14	29	1.83
6912212--6912306	39	2.4	40	83	3	120	30	12	12	44	1.80
6912677--6912763	33	2.6	34	76	10	88	20	8	2	68	1.26
6914006--6914049	20	2.2	20	83	0	52	22	2	13	61	1.43
6914286--6914332	25	1.9	25	86	4	69	44	4	17	34	1.68
6916103--6916171	19	3.7	19	84	9	97	46	11	8	33	1.71
6917180--6917218	15	2.7	15	80	4	53	17	2	15	64	1.41
6917361--6917396	17	2.1	17	89	0	54	63	5	5	25	1.38
6917914--6917960	17	2.8	17	83	6	60	55	14	8	21	1.66
6918106--6918139	17	1.9	18	88	5	52	32	14	17	35	1.91
6918226--6918326	50	2.0	50	86	1	139	42	9	14	32	1.79
6918509--6918590	22	3.6	22	80	12	87	42	9	8	39	1.68
6918541--6918710	46	3.7	46	77	10	150	41	12	6	38	1.69
6918436--6918710	91	3.1	90	76	6	220	41	14	8	36	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6918740--6918771	14	2.3	14	94	0	55	75	6	3	15	1.14
6919981--6920031	18	2.8	19	77	19	63	5	13	0	80	0.89
6922819--6922849	15	2.1	15	93	0	53	16	32	6	45	1.72
6924076--6924242	59	2.8	57	81	11	194	38	10	4	46	1.59
6923944--6924174	126	1.8	127	83	5	306	33	12	6	47	1.68
6924085--6924257	60	2.9	59	83	9	199	37	10	3	48	1.54
6925023--6925063	5	7.6	5	86	10	55	75	0	2	21	0.92
6925281--6925574	44	6.6	44	76	10	229	42	18	14	24	1.88
6925303--6925567	91	3.0	89	83	4	325	42	18	13	24	1.88
6925941--6926266	79	4.1	80	87	1	435	35	14	9	40	1.79
6925992--6926032	21	2.0	21	95	0	73	39	14	4	41	1.67
6926072--6926130	20	2.9	21	79	5	75	37	13	10	38	1.79
6925941--6926255	158	2.0	158	89	0	486	35	14	9	40	1.79
6926151--6926190	21	1.9	21	84	0	53	40	10	7	42	1.67
6926232--6926399	21	8.0	21	81	4	196	39	14	8	36	1.77
6926232--6926391	63	2.5	62	87	7	216	40	15	7	36	1.76
6926232--6926426	42	4.5	42	80	5	176	40	13	8	37	1.75
6927497--6927607	10	11.8	10	71	18	60	10	15	0	73	1.08
6927497--6927546	18	2.7	19	87	9	77	10	16	0	74	1.08
6927514--6927587	11	7.4	11	74	18	72	9	10	0	79	0.93
6927505--6927602	18	5.9	17	73	17	73	10	12	0	77	0.99
6931381--6931776	59	6.6	59	77	14	280	36	11	6	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6931427--6931783	59	5.9	59	79	13	289	36	11	5	47	1.62
6931578--6931610	13	2.3	15	90	10	52	27	18	0	54	1.44
6931486--6931730	127	1.9	128	85	5	336	34	11	5	48	1.62
6932176--6932215	19	2.1	19	85	4	53	2	32	0	65	1.06
6932181--6932216	10	3.7	10	88	7	56	2	27	0	69	1.02
6933944--6934381	72	5.9	71	73	13	264	47	5	10	36	1.61
6933941--6934321	74	5.2	73	76	11	300	46	5	10	37	1.61
6936676--6936725	19	2.6	19	90	0	73	62	2	18	18	1.43
6937381--6937410	15	2.0	15	93	0	51	70	0	0	30	0.88
6949832--6949886	26	2.1	27	86	3	76	32	10	14	41	1.81
6953087--6953185	47	2.1	47	83	7	121	57	2	2	38	1.22
6953104--6953208	46	2.3	45	80	6	113	60	4	2	32	1.32
6953087--6953201	47	2.5	46	77	11	117	59	2	2	35	1.25
6953430--6953473	19	2.3	19	88	0	61	27	2	6	63	1.31
6953430--6953545	9	12.6	9	68	11	56	32	3	5	58	1.37
6953604--6953686	20	4.3	20	67	20	59	24	3	3	68	1.21
6953599--6953686	28	3.2	27	67	16	72	23	3	3	69	1.19
6953680--6953715	18	2.0	18	94	0	63	33	2	0	63	1.08
6953604--6953711	57	1.9	57	90	1	173	25	3	2	67	1.21
6969660--6969709	23	2.2	23	82	3	57	54	0	4	42	1.19
6969801--6969844	21	2.0	22	82	4	54	50	2	0	47	1.13
6973411--6973463	14	3.6	14	75	20	54	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6973483--6973550	34	2.1	33	86	8	95	39	11	11	36	1.79
6975778--6975824	21	2.2	21	77	7	51	44	0	0	55	0.99
6976752--6976782	3	10.3	3	92	0	53	38	0	0	61	0.96
6986400--6986455	22	2.4	23	82	8	78	55	0	0	44	0.99
6986481--6986505	12	2.1	12	100	0	50	60	0	0	40	0.97
6991431--6991547	58	2.0	57	90	1	180	50	19	8	21	1.74
6995295--6995337	22	2.0	22	86	9	61	55	2	0	41	1.12
6998869--6998915	24	2.0	24	83	8	60	21	4	0	74	0.99
6998911--6998955	22	2.0	22	86	0	63	51	0	0	48	1.00
6999619--6999658	17	2.2	19	86	8	57	67	12	5	15	1.38
7000839--7000908	24	3.1	21	75	18	61	78	4	1	15	0.98
7000884--7000908	10	2.5	10	100	0	50	92	0	0	8	0.40
7001692--7001873	11	16.0	11	73	16	124	58	3	3	33	1.34
7001692--7001873	3	67.0	3	70	22	82	58	3	3	33	1.34
7001692--7001875	5	35.6	5	77	12	106	58	3	3	33	1.34
7001692--7001875	29	6.7	26	65	15	77	58	3	3	33	1.34
7001696--7001873	8	22.5	8	69	21	76	58	3	3	33	1.35
7004203--7004291	27	3.3	26	68	26	69	53	5	4	35	1.45
7004197--7004304	20	5.7	20	71	18	70	51	8	4	35	1.53
7004429--7004484	24	2.3	24	78	6	60	53	7	3	35	1.46
7004559--7004606	21	2.3	20	83	13	62	56	10	4	29	1.52
7004564--7004608	22	2.0	22	87	8	65	55	13	4	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7004600--7004673	24	3.3	22	75	17	55	56	12	5	25	1.56
7004687--7004963	55	4.9	55	76	13	262	52	11	6	28	1.63
7004755--7004845	23	3.6	23	72	23	83	53	12	6	27	1.62
7004677--7004944	110	2.4	111	81	11	300	52	11	6	29	1.62
7004814--7004905	31	3.0	31	78	7	109	51	11	7	29	1.66
7004877--7004939	32	2.0	32	90	0	99	53	12	6	26	1.62
7004908--7004974	20	3.2	20	76	19	64	52	11	4	31	1.58
7004902--7005042	45	3.1	46	83	10	141	56	11	2	29	1.48
7004932--7005056	45	2.7	45	84	10	157	56	12	2	28	1.48
7004932--7005054	24	5.3	23	71	24	89	56	12	2	28	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131