genome.fa.s2.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  60  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12007852--12008373	265	2.0	265	91	0	857	30	17	13	38	1.88
12011284--12011325	22	1.9	22	85	9	59	42	11	9	35	1.74
12011744--12011888	77	1.9	77	82	0	182	40	17	10	31	1.83
12012209--12013302	130	8.4	129	76	6	820	39	17	7	35	1.78
12012209--12013071	389	2.2	389	82	6	991	40	17	7	34	1.77
12013755--12014242	130	3.8	129	74	9	327	42	16	8	33	1.78
12013918--12014357	130	3.4	128	77	6	311	40	17	8	33	1.80
12014836--12015197	130	2.8	126	77	9	333	40	7	15	37	1.74
12014851--12015144	128	2.3	125	80	5	302	40	6	15	37	1.72
12015280--12015516	128	1.8	130	81	7	295	38	8	18	34	1.81
12014966--12015817	444	1.9	444	80	6	994	37	7	17	37	1.78
12015821--12016753	130	7.2	131	77	7	778	35	8	17	38	1.81
12015821--12016700	392	2.3	388	82	5	1040	35	8	17	38	1.80
12017658--12017905	128	1.9	129	81	5	297	34	8	17	39	1.79
12017422--12018130	237	3.0	237	77	5	538	36	9	16	37	1.82
12017815--12018018	111	1.8	111	84	2	275	32	9	18	38	1.84
12017658--12018420	368	2.1	368	78	7	796	36	8	17	37	1.81
12017913--12020090	130	17.0	128	73	10	1225	35	8	17	38	1.80
12019039--12020038	518	1.9	516	81	3	1197	35	8	17	39	1.80
12020355--12021108	129	5.9	128	75	7	451	34	8	17	39	1.80
12021229--12021564	129	2.6	129	79	5	306	36	9	16	37	1.81
12021662--12022542	130	6.9	129	74	9	342	35	9	17	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12021923--12022549	130	4.8	131	79	4	610	34	8	18	38	1.81
12021664--12022542	260	3.4	258	78	7	699	35	9	17	38	1.82
12028105--12028151	21	2.2	21	85	7	60	80	10	6	2	0.96
12028114--12028165	12	4.5	11	79	16	52	80	7	7	3	1.00
12028115--12028158	22	2.0	23	86	13	65	79	6	9	4	1.04
12028106--12028189	35	2.3	38	80	15	97	77	8	8	5	1.13
12028113--12028192	37	2.3	34	83	12	99	77	6	10	6	1.12
12029021--12029107	17	4.9	18	74	19	67	77	0	16	6	0.98
12029026--12029074	13	3.3	15	73	26	50	77	0	16	6	0.96
12029017--12029080	30	2.2	30	88	8	96	76	0	17	6	0.98
12029046--12029107	21	3.1	20	74	21	67	75	0	16	8	1.02
12029021--12029099	28	3.0	27	76	18	85	78	0	15	6	0.94
12030419--12030578	78	2.0	79	83	4	198	36	17	13	31	1.89
12030444--12030578	41	3.4	41	75	11	145	34	17	14	33	1.91
12030731--12030789	18	3.2	18	82	4	64	23	25	13	37	1.92
12031010--12031224	33	6.5	33	72	6	148	35	20	16	27	1.94
12031042--12031453	33	12.5	34	67	10	174	35	19	16	27	1.94
12031000--12031224	67	3.4	67	79	3	206	36	20	16	26	1.94
12031082--12031321	99	2.4	98	84	4	279	36	20	16	26	1.94
12031183--12031481	132	2.3	132	84	2	368	35	19	17	27	1.94
12031761--12031799	18	2.2	18	90	0	60	28	15	12	43	1.83
12032112--12032327	104	2.1	105	79	4	231	23	19	9	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12032206--12032509	70	4.4	69	81	6	263	20	18	12	48	1.80
12032282--12032805	35	15.0	35	72	7	190	19	16	12	51	1.76
12032205--12032924	139	5.2	140	74	7	557	19	17	12	50	1.78
12032276--12032894	70	8.9	69	75	8	403	19	16	12	51	1.76
12032276--12032924	278	2.3	281	79	3	709	19	17	12	50	1.77
12036307--12036490	41	4.5	41	78	10	169	31	14	13	40	1.85
12036307--12036520	82	2.6	81	77	9	209	31	15	13	39	1.86
12037881--12037952	4	18.8	4	70	27	50	75	0	2	22	0.94
12037889--12037948	7	8.1	7	72	17	50	75	0	3	21	0.95
12037880--12037951	14	4.7	15	72	16	51	75	0	2	22	0.94
12038135--12038189	10	5.7	10	75	14	53	50	3	3	41	1.37
12039024--12040002	130	7.6	128	75	8	716	39	17	6	36	1.76
12040071--12041229	129	9.0	129	78	6	1021	39	17	7	34	1.79
12041228--12042861	129	12.7	130	76	6	1141	39	18	7	34	1.79
12041300--12042801	259	5.8	255	76	6	1089	39	17	7	34	1.79
12041324--12042765	515	2.8	509	74	7	1320	39	17	7	34	1.79
12042892--12044356	130	11.3	130	75	6	1106	38	17	8	35	1.80
12044369--12045518	130	8.9	129	74	6	855	39	17	7	35	1.79
12044526--12045494	259	3.7	257	75	10	735	39	17	8	35	1.79
12045415--12045622	104	2.0	104	95	0	371	40	15	7	36	1.75
12045518--12048260	129	21.3	129	77	5	1984	39	17	7	35	1.78
12045707--12048094	904	2.6	890	80	7	2425	39	17	7	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12045542--12048260	259	10.5	258	76	7	2029	39	17	7	35	1.78
12048491--12048531	3	13.7	3	84	0	55	7	0	24	68	1.15
12048484--12048545	6	10.3	6	89	0	70	16	0	19	64	1.29
12053656--12053857	65	3.1	65	76	7	194	44	12	22	20	1.85
12053599--12053889	64	4.5	65	76	6	191	45	13	21	19	1.85
12064411--12064445	3	11.7	3	87	0	52	62	0	5	31	1.18
12064435--12064496	26	2.4	24	76	10	61	77	3	4	14	1.06
12064444--12064497	25	2.1	25	83	10	65	81	3	3	11	0.95
12064776--12064828	22	2.4	22	84	9	72	66	18	9	5	1.41
12065403--12065478	31	2.5	31	82	8	100	36	17	17	28	1.92
12070342--12070420	26	3.0	26	92	0	131	26	24	17	31	1.97
12071273--12071323	26	2.0	26	84	0	66	31	23	15	29	1.95
12072157--12072209	26	2.0	26	96	0	97	28	24	20	26	1.99
12073058--12073110	26	2.0	26	96	0	97	26	24	20	28	1.99
12068809--12078313	902	10.6	903	85	3	11919	26	24	23	25	2.00
12073954--12074006	26	2.0	26	92	0	88	26	20	22	30	1.98
12074844--12074896	26	2.0	26	92	0	88	28	24	20	26	1.99
12075736--12075788	26	2.0	26	96	0	97	28	26	18	26	1.98
12079132--12079184	26	2.0	26	96	0	97	26	24	20	28	1.99
12078258--12081859	876	4.0	884	86	4	4678	25	25	24	24	2.00
12080907--12080985	26	3.0	26	100	0	158	26	26	20	26	1.99
12080022--12081859	914	2.0	918	89	2	2784	26	25	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12082613--12082665	26	2.0	26	96	0	97	28	26	18	26	1.98
12081917--12086085	904	4.8	873	82	7	4620	26	24	24	25	2.00
12084382--12084434	26	2.0	26	96	0	97	24	26	22	26	2.00
12088428--12088477	26	1.9	26	91	0	82	22	28	20	30	1.98
12089319--12089371	26	2.0	26	92	0	88	28	24	18	28	1.98
12086538--12093552	891	7.9	885	83	6	8147	25	25	23	25	2.00
12090919--12090949	4	7.8	4	92	0	53	3	74	22	0	0.96
12091205--12091248	21	2.1	21	95	0	79	6	22	25	45	1.77
12092009--12092059	26	2.0	26	92	0	84	27	29	13	29	1.94
12092900--12092952	26	2.0	26	88	0	79	28	24	18	28	1.98
12099454--12099506	26	2.0	26	96	0	97	26	24	20	28	1.99
12101168--12101218	26	2.0	26	96	0	93	27	27	19	25	1.99
12101811--12102270	231	2.0	227	83	4	575	18	35	24	20	1.95
12102299--12102351	26	2.0	26	96	0	97	32	26	15	26	1.95
12103172--12104692	717	2.1	719	87	1	2226	26	23	23	26	2.00
12106541--12106593	26	2.0	26	96	0	97	28	26	18	26	1.98
12103928--12109085	862	5.9	862	79	8	5164	26	24	23	25	2.00
12109779--12109805	12	2.2	12	100	0	54	22	18	44	14	1.86
12108714--12110440	677	2.6	677	91	1	2775	27	23	23	25	2.00
12111817--12111869	26	2.0	26	92	0	88	28	28	18	24	1.98
12113559--12113607	25	1.9	26	91	4	82	24	26	18	30	1.98
12116244--12116296	26	2.0	26	96	0	97	26	24	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12112698--12119151	891	7.2	899	85	3	8241	25	24	24	25	2.00
12117144--12117196	26	2.0	26	92	0	88	28	24	18	28	1.98
12118035--12118087	26	2.0	26	96	0	97	26	24	20	28	1.99
12118932--12118984	26	2.0	26	96	0	97	26	24	20	28	1.99
12119715--12119767	26	2.0	26	96	0	97	26	24	20	28	1.99
12119741--12123089	856	3.9	861	86	2	4497	25	24	24	25	2.00
12123935--12126004	706	2.9	712	87	2	2971	27	23	23	26	2.00
12126040--12126340	166	1.8	166	86	2	435	17	28	30	23	1.97
12126042--12126427	166	2.4	161	81	5	429	16	28	30	24	1.96
12127294--12127346	26	2.0	26	96	0	97	28	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131