genome.fa.s2.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  114  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20418113--20418150	7	5.3	7	82	17	51	18	0	31	50	1.47
20418095--20418148	22	2.5	21	87	3	72	18	1	27	51	1.56
20418113--20418150	15	2.6	15	80	19	53	18	0	31	50	1.47
20424111--20424487	13	29.7	13	66	21	137	55	2	1	41	1.20
20424126--20424471	33	11.5	31	70	22	170	55	2	1	40	1.21
20424131--20424488	36	10.5	33	70	19	172	55	2	1	40	1.21
20424174--20424487	36	8.6	36	68	20	181	55	2	1	41	1.20
20424193--20424487	23	12.7	23	67	25	112	55	2	1	41	1.20
20424318--20424448	49	2.6	51	81	6	149	54	0	1	43	1.15
20424585--20424641	26	2.2	27	87	6	82	50	3	0	45	1.18
20424583--20424648	25	2.6	26	83	9	84	48	3	0	48	1.17
20424583--20424648	26	2.6	24	79	13	78	48	3	0	48	1.17
20424954--20425021	24	2.9	23	72	22	68	39	4	4	51	1.42
20425617--20425649	17	1.9	17	93	0	57	57	0	6	36	1.23
20427966--20428005	17	2.3	17	86	4	53	45	7	15	32	1.74
20428840--20428867	11	2.5	11	100	0	56	75	14	0	10	1.06
20431673--20431724	17	3.1	17	91	0	77	51	13	17	17	1.76
20435782--20435808	12	2.2	12	100	0	54	59	0	0	40	0.98
20435802--20435834	16	2.1	16	94	0	57	63	3	9	24	1.38
20436069--20436324	131	2.0	124	83	6	316	41	10	16	32	1.82
20438325--20438365	17	2.4	17	87	0	55	29	21	26	21	1.99
20438716--20438750	16	2.2	16	94	0	61	31	20	5	42	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20438954--20438997	24	2.0	22	82	13	54	34	11	0	54	1.36
20442846--20442885	18	2.2	18	90	0	62	20	25	12	42	1.86
20456155--20456199	15	2.9	16	80	12	58	66	2	2	28	1.15
20457178--20457235	22	2.5	24	75	18	59	48	3	0	48	1.18
20463309--20463352	22	2.0	22	82	8	54	50	2	0	47	1.13
20463327--20463378	17	2.9	18	73	23	56	51	3	0	44	1.19
20465532--20465569	11	3.5	11	89	7	51	65	0	2	31	1.06
20466592--20466627	19	2.0	17	89	10	54	36	11	19	33	1.87
20467217--20467273	28	2.1	26	81	12	62	49	0	0	50	1.00
20468010--20468062	23	2.3	23	83	0	61	54	0	1	43	1.11
20470155--20470191	3	12.3	3	88	0	56	29	67	0	2	1.04
20471038--20471070	14	2.4	14	90	10	50	36	0	63	0	0.95
20473009--20473135	17	7.0	19	71	8	70	60	2	1	35	1.19
20473009--20473128	9	13.2	9	70	12	59	58	2	1	37	1.22
20473233--20473298	25	2.6	25	88	4	89	65	0	3	31	1.08
20473258--20473313	25	2.2	25	87	6	78	73	0	3	23	0.99
20473307--20473368	30	2.0	31	84	9	83	62	1	1	33	1.14
20473470--20473509	19	2.0	20	85	4	55	22	2	7	67	1.28
20473676--20473729	26	2.1	26	93	3	92	24	0	1	74	0.92
20473698--20473759	19	3.4	17	78	10	61	24	1	3	70	1.10
20473762--20473809	19	2.5	19	83	10	53	45	4	2	47	1.33
20473785--20473856	28	2.5	28	84	11	83	34	1	5	58	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20473840--20473866	11	2.5	11	100	0	54	25	0	7	66	1.17
20476827--20476855	2	15.0	2	92	7	51	48	0	0	51	1.00
20477770--20477808	8	4.9	8	90	0	51	48	10	0	41	1.37
20478165--20478240	29	2.6	29	85	4	98	51	0	0	48	1.00
20478165--20478259	29	3.1	30	79	13	97	49	1	0	49	1.07
20480684--20480709	12	2.2	12	100	0	52	23	7	23	46	1.78
20482990--20483043	3	18.0	3	84	0	63	29	37	1	31	1.68
20483324--20483413	30	3.0	30	80	4	94	37	18	4	38	1.71
20483355--20483430	30	2.5	30	85	8	93	38	17	5	39	1.72
20483559--20483596	15	2.5	15	91	0	58	52	15	0	31	1.43
20483749--20484000	126	2.0	126	94	0	441	36	20	10	32	1.87
20492466--20492496	2	15.5	2	93	0	53	51	0	0	48	1.00
20494257--20494281	12	2.1	12	100	0	50	16	8	0	76	1.02
20495362--20495391	2	15.0	2	92	0	51	46	0	0	53	1.00
20500439--20500595	80	2.0	80	93	0	269	35	17	15	31	1.91
20506775--20506827	17	3.1	18	75	22	51	67	3	0	28	1.07
20510461--20510537	32	2.4	32	82	4	93	22	2	19	55	1.55
20510461--20510519	16	3.6	17	80	8	70	16	1	22	59	1.46
20510476--20510544	16	4.2	16	81	1	66	24	2	18	53	1.58
20510508--20510550	16	2.6	16	85	3	50	34	4	11	48	1.60
20510744--20510776	15	2.1	17	88	11	52	54	0	0	45	0.99
20511870--20511906	15	2.4	16	91	8	60	16	0	18	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20513463--20513502	15	2.7	15	76	0	53	60	0	0	40	0.97
20514298--20514328	2	15.5	2	100	0	62	48	0	0	51	1.00
20515478--20515524	21	2.2	22	85	11	62	51	4	2	42	1.33
20515477--20515527	22	2.3	23	80	16	63	50	3	1	43	1.31
20516117--20516142	13	2.0	13	100	0	52	38	15	15	30	1.88
20518364--20518391	2	14.0	2	100	0	56	50	0	0	50	1.00
20522190--20522219	15	2.0	15	93	0	51	60	16	6	16	1.56
20523594--20523621	2	14.0	2	100	0	56	50	0	0	50	1.00
20527343--20527367	1	25.0	1	100	0	50	0	100	0	0	0.00
20528362--20528404	23	1.9	22	85	4	59	32	0	2	65	1.06
20530223--20530260	19	2.0	20	89	5	60	0	2	21	76	0.91
20530223--20530261	10	3.9	10	86	10	53	0	2	20	76	0.90
20541050--20541075	2	13.0	2	100	0	52	50	0	0	50	1.00
20543531--20543569	18	2.2	18	95	0	69	48	12	2	35	1.55
20556742--20556802	28	2.3	27	81	10	81	67	0	3	29	1.07
20557349--20557397	21	2.3	22	92	3	82	51	0	0	48	1.00
20557349--20557397	22	2.3	21	92	3	80	51	0	0	48	1.00
20558787--20559053	144	1.9	144	80	3	322	35	10	13	39	1.80
20558812--20559088	144	1.9	143	79	5	308	33	10	14	41	1.80
20560088--20560145	20	2.9	20	85	7	73	41	32	5	20	1.75
20560311--20560347	13	2.9	13	96	4	67	54	24	0	21	1.45
20562399--20562437	21	2.0	21	85	10	55	48	2	2	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20562620--20562660	20	2.0	22	85	9	59	53	2	0	43	1.13
20563494--20563537	21	2.2	20	84	12	54	68	0	2	29	1.02
20564927--20565010	3	29.0	3	73	15	52	32	2	5	59	1.34
20564934--20565015	11	7.9	11	69	16	50	32	2	6	58	1.36
20565902--20566007	23	4.4	22	66	28	56	19	2	5	71	1.19
20570792--20570835	22	1.9	24	86	9	65	40	0	2	56	1.11
20572217--20572243	2	13.5	2	100	0	54	51	0	0	48	1.00
20573689--20573751	31	2.0	31	87	6	92	34	20	7	36	1.82
20577264--20577311	20	2.4	21	93	6	82	54	4	20	20	1.61
20581836--20581871	16	2.3	16	90	4	56	83	0	13	2	0.76
20581836--20581875	15	2.7	16	88	11	59	80	0	15	5	0.88
20581974--20582016	22	2.0	22	85	0	59	46	9	11	32	1.72
20583313--20583364	9	5.8	9	77	8	52	23	11	13	51	1.73
20583638--20584041	146	2.8	145	76	4	391	30	14	14	39	1.87
20584278--20584324	8	5.9	8	79	16	53	87	0	2	10	0.63
20587337--20587488	59	2.5	60	71	9	139	40	9	9	40	1.70
20588408--20588706	166	1.8	166	89	0	472	40	15	11	32	1.83
20600166--20600205	17	2.5	16	92	8	64	50	0	0	50	1.00
20600211--20600304	3	31.3	3	86	0	116	60	1	7	30	1.31
20601419--20601479	3	20.3	3	96	0	113	65	0	1	32	1.02
20601817--20601920	14	7.2	14	72	6	91	52	29	0	17	1.44
20601862--20602001	7	19.0	7	65	15	50	48	32	0	17	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20601817--20601920	29	3.6	28	87	5	136	52	29	0	17	1.44
20601910--20601984	31	2.4	31	90	0	123	48	34	0	17	1.48
20601853--20602028	8	23.5	8	64	22	53	50	31	0	17	1.51
20601910--20601993	31	2.7	31	85	7	109	47	33	1	17	1.56
20602033--20602072	21	1.9	21	89	0	62	55	32	0	12	1.38
20604444--20604558	43	2.7	42	86	2	158	31	12	13	42	1.81
20606216--20606279	34	1.9	32	87	6	92	71	4	3	20	1.17
20606363--20606399	17	2.2	17	90	4	58	81	8	2	8	0.97
20606342--20606400	17	3.4	17	77	13	57	79	8	3	8	1.03
20606561--20606613	3	17.7	3	100	0	106	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131