genome.fa.s2.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  97  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17387501--17387542	16	2.7	16	85	3	50	73	2	16	7	1.15
17387729--17387775	25	2.0	23	84	16	60	29	2	2	65	1.15
17387726--17387768	23	1.9	23	85	4	61	30	2	2	65	1.18
17387773--17387828	25	2.1	27	83	9	71	71	0	5	23	1.06
17388868--17388914	8	5.6	8	85	9	67	76	2	2	19	0.99
17388867--17388914	9	5.6	9	80	9	64	77	2	2	18	0.97
17388859--17388914	17	3.3	17	80	7	69	78	3	1	16	0.97
17393311--17393356	23	2.0	24	86	4	67	13	6	2	78	1.04
17395240--17395273	17	2.0	17	88	11	52	70	0	2	26	1.01
17398339--17398715	54	6.8	53	75	10	242	31	8	6	53	1.57
17398339--17398709	55	6.7	56	76	9	287	30	8	6	53	1.57
17398489--17398696	113	1.8	114	88	1	319	30	6	6	56	1.50
17404655--17404763	55	2.0	55	96	0	200	45	11	12	30	1.77
17408256--17408300	22	2.2	20	84	8	54	75	4	6	13	1.15
17413090--17413127	4	9.5	4	94	0	67	50	21	0	28	1.49
17414136--17414170	18	1.9	18	88	0	52	34	0	2	62	1.10
17415543--17415582	18	2.3	17	83	8	53	55	2	0	42	1.13
17427602--17427676	14	5.1	16	71	19	56	45	0	0	54	0.99
17427608--17427671	30	2.1	30	88	0	92	45	0	0	54	0.99
17428574--17428606	2	16.5	2	93	0	57	48	0	0	51	1.00
17432786--17432855	22	3.1	23	84	10	92	12	10	4	72	1.24
17436626--17436666	22	2.0	20	85	9	55	65	0	12	21	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17436922--17436974	27	2.0	26	85	3	70	45	15	7	32	1.74
17436993--17437053	25	2.4	26	91	5	99	50	22	4	21	1.67
17436995--17437053	13	4.7	13	75	6	59	50	23	3	22	1.63
17442565--17442615	25	2.0	25	88	7	77	19	25	3	50	1.64
17444657--17444719	28	2.2	28	80	5	65	38	17	11	33	1.85
17444855--17444949	35	2.7	35	80	6	120	15	13	14	55	1.69
17445295--17445401	35	3.1	35	79	5	135	20	20	10	48	1.78
17445297--17445478	70	2.6	70	82	7	210	23	22	9	44	1.82
17445298--17445581	35	8.1	35	69	20	121	23	22	9	44	1.82
17445352--17445577	105	2.2	105	81	4	260	23	22	8	44	1.81
17445352--17445582	35	6.6	35	69	14	127	23	22	9	44	1.81
17446746--17446793	23	2.1	23	100	0	96	47	12	10	29	1.74
17449470--17449737	35	7.7	35	68	9	134	45	11	20	22	1.82
17449372--17449746	70	5.4	70	73	7	246	45	11	20	22	1.83
17449566--17449760	105	1.9	105	80	6	234	49	10	18	22	1.77
17449590--17449761	35	4.9	35	73	11	120	48	11	18	22	1.79
17449610--17449780	70	2.4	70	81	1	173	46	11	18	22	1.81
17449782--17449879	34	2.8	35	81	4	110	48	12	18	20	1.79
17449706--17449865	87	1.8	88	81	4	198	45	11	20	23	1.82
17454904--17454967	12	5.2	12	74	9	58	71	0	20	7	1.10
17454928--17454966	12	3.2	12	92	0	60	74	0	17	7	1.05
17455627--17455682	23	2.5	23	85	2	69	41	7	7	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17455796--17455910	44	2.6	45	77	5	108	37	7	9	45	1.66
17455797--17455911	21	5.2	21	70	11	77	37	7	9	45	1.66
17458343--17458386	22	2.0	22	95	0	79	20	2	18	59	1.49
17459450--17459485	17	2.0	19	89	10	58	72	2	11	13	1.23
17460513--17460676	39	4.2	39	71	11	122	37	11	18	32	1.87
17460514--17460670	76	2.0	77	80	7	176	36	11	19	31	1.88
17460932--17461032	44	2.3	44	80	10	109	31	14	16	36	1.90
17461068--17461252	23	8.3	22	70	14	83	34	6	14	44	1.70
17461068--17461331	45	5.9	44	68	14	148	34	6	15	43	1.72
17461411--17461451	19	2.1	20	86	4	57	29	7	12	51	1.66
17461570--17461604	18	1.9	18	88	0	52	28	14	8	48	1.73
17462019--17462048	7	4.3	7	95	0	51	70	0	30	0	0.88
17462902--17462942	18	2.2	19	86	4	57	21	0	2	75	0.92
17463928--17464000	38	1.9	38	86	2	103	46	9	5	38	1.60
17463830--17464009	93	1.9	95	84	7	242	47	7	7	36	1.61
17468451--17468498	13	3.5	13	78	10	60	29	2	0	68	1.01
17468451--17468498	7	7.0	7	77	13	55	29	2	0	68	1.01
17468452--17468509	28	2.1	28	93	0	98	34	1	0	63	1.04
17472074--17472733	348	1.9	349	85	4	920	34	18	11	34	1.88
17474343--17474994	354	1.9	347	82	4	817	34	18	11	36	1.87
17485904--17485930	9	3.0	9	100	0	54	55	11	22	11	1.66
17488525--17488558	17	2.0	17	100	0	68	52	11	5	29	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17491673--17491716	22	2.0	22	90	0	70	45	9	9	36	1.68
17495734--17495777	22	2.0	22	86	0	61	47	9	11	31	1.71
17497913--17497974	30	2.1	31	81	6	74	51	3	1	43	1.27
17497931--17497986	21	2.6	21	88	8	78	53	3	0	42	1.18
17497983--17498053	34	2.1	34	84	5	90	67	4	1	26	1.17
17498025--17498079	11	4.9	11	80	12	51	65	0	1	32	1.03
17498002--17498083	35	2.3	36	77	8	89	69	1	1	28	1.03
17498435--17498497	25	2.5	25	100	0	126	36	7	14	41	1.75
17498494--17498661	83	2.0	83	87	2	239	29	11	9	49	1.70
17499186--17499224	10	3.8	10	86	3	51	66	10	2	20	1.33
17499612--17499660	19	2.6	19	80	0	53	42	2	0	55	1.11
17499693--17499755	24	2.7	23	85	7	81	42	0	6	50	1.27
17499700--17499754	25	2.2	24	87	9	76	41	0	5	52	1.24
17499847--17499887	18	2.3	18	82	0	55	34	4	2	58	1.32
17500280--17500318	20	1.9	19	85	10	51	71	5	15	7	1.26
17502854--17502933	28	2.9	28	74	9	74	42	16	8	32	1.79
17509922--17509967	23	1.9	23	86	8	65	63	2	0	34	1.07
17510250--17510308	24	2.5	23	83	5	64	49	28	3	18	1.64
17510283--17510318	16	2.2	16	90	0	54	50	25	0	25	1.50
17510950--17511041	47	2.0	47	81	10	109	8	4	10	76	1.15
17512978--17513066	38	2.3	38	88	0	133	32	12	17	37	1.88
17517364--17517756	144	2.7	142	81	7	429	32	12	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17520104--17520156	3	17.7	3	100	0	106	66	0	0	33	0.92
17520842--17520889	25	2.0	25	83	4	62	35	2	14	47	1.56
17521911--17521941	12	2.6	12	100	0	62	29	16	9	45	1.79
17522208--17522325	35	3.4	35	66	13	89	22	22	11	44	1.85
17522209--17522345	70	2.0	70	88	0	202	20	21	10	47	1.80
17522288--17522510	104	2.1	105	84	3	281	20	19	10	49	1.78
17522289--17522440	35	4.4	34	68	6	99	23	19	8	49	1.75
17522418--17522580	69	2.3	70	79	1	184	18	22	11	47	1.79
17522479--17522579	35	2.9	34	80	10	114	18	23	11	45	1.83
17522463--17522613	70	2.2	69	82	8	173	17	22	13	46	1.83
17522521--17522929	70	5.9	70	70	7	211	19	22	11	46	1.82
17522807--17523006	70	2.9	70	78	5	172	19	24	11	45	1.83
17523059--17523137	35	2.3	35	84	4	97	20	25	10	44	1.82
17523253--17523321	35	2.0	35	82	5	86	15	23	15	44	1.85
17523325--17523399	34	2.2	34	78	7	80	17	12	16	54	1.70
17526042--17526086	24	1.9	23	82	13	56	60	20	0	20	1.37
17526758--17526806	24	2.0	24	84	0	62	34	10	12	42	1.76
17530558--17530666	32	3.4	31	81	7	128	49	9	3	37	1.52
17530681--17530718	20	1.9	19	89	5	58	42	10	0	47	1.38
17530916--17531019	30	3.4	28	75	15	82	40	3	8	47	1.53
17535230--17535272	22	2.0	22	86	4	61	37	11	9	41	1.74
17536436--17536641	103	2.0	105	89	2	317	32	17	11	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17538476--17538524	20	2.5	19	93	6	89	34	12	22	30	1.91
17550002--17550041	2	20.0	2	84	0	53	45	2	2	50	1.28
17550047--17550080	4	8.5	4	93	0	59	23	0	23	52	1.47
17551241--17551283	2	21.5	2	90	0	68	53	2	0	44	1.13
17552536--17552594	28	2.2	25	88	8	82	76	0	20	3	0.93
17553076--17553210	58	2.3	60	83	6	177	46	11	10	31	1.74
17556657--17556716	15	3.9	15	78	4	66	26	3	21	48	1.66
17557954--17557996	13	3.2	13	77	6	50	25	2	0	72	0.97
17557959--17557999	21	2.0	20	85	4	55	24	2	0	73	0.96
17558274--17558420	64	2.3	63	80	11	160	44	12	14	27	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131