genome.fa.s2.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  47  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9752008--9752561	296	1.9	294	83	5	724	32	13	15	38	1.87
9756888--9757160	125	2.2	125	85	8	378	38	14	12	34	1.85
9756869--9757082	62	3.4	61	72	11	202	39	13	14	32	1.85
9759016--9759057	21	2.0	21	85	0	57	78	0	7	14	0.95
9759733--9759765	17	1.9	17	88	11	50	51	0	0	48	1.00
9760377--9760433	29	2.0	29	82	0	69	50	3	0	45	1.18
9761508--9761546	17	2.5	15	87	8	51	56	7	0	35	1.28
9765853--9766566	60	11.8	61	80	7	717	46	6	11	35	1.66
9766001--9766034	18	1.9	18	88	5	52	58	5	0	35	1.22
9776970--9777180	76	2.8	73	80	13	243	60	6	15	17	1.55
9778027--9778371	79	4.3	79	74	10	311	20	18	15	45	1.85
9778144--9778457	165	1.9	165	86	2	452	21	19	14	43	1.87
9778027--9778419	79	4.9	79	74	9	274	20	18	15	45	1.86
9778172--9778831	86	7.8	85	76	6	399	23	20	13	42	1.87
9778342--9778761	172	2.4	172	80	2	441	24	21	11	42	1.86
9778776--9778931	79	2.0	78	81	6	181	20	15	16	48	1.82
9780538--9781124	59	9.9	60	77	10	474	45	7	10	36	1.68
9780405--9781123	238	3.0	233	81	9	763	46	7	10	36	1.66
9780432--9781124	297	2.3	294	82	8	789	45	7	10	36	1.67
9784612--9784654	20	2.2	20	83	4	52	32	4	6	55	1.47
9792516--9792559	23	2.0	23	86	4	63	27	9	18	45	1.79
9792494--9792665	67	2.6	67	83	1	202	30	20	14	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9793548--9793587	21	2.0	21	85	14	57	20	2	5	72	1.15
9794168--9794278	47	2.3	49	80	7	129	63	7	7	22	1.45
9796325--9796368	16	2.7	16	86	13	63	77	0	22	0	0.77
9796325--9796367	21	2.0	21	90	4	68	79	0	20	0	0.74
9796646--9796696	14	3.5	14	79	10	57	11	0	3	84	0.75
9796646--9796696	18	3.2	16	84	13	61	11	0	3	84	0.75
9798520--9798559	20	2.0	20	90	0	62	17	10	10	62	1.53
9798893--9798930	3	12.7	3	100	0	76	68	0	0	31	0.90
9799036--9799065	15	1.9	16	93	6	53	33	0	13	53	1.40
9799112--9799168	25	2.2	27	87	6	82	45	0	3	50	1.18
9799893--9799922	2	15.0	2	100	0	60	50	0	0	50	1.00
9804141--9804171	2	15.5	2	100	0	62	48	0	0	51	1.00
9804244--9804342	2	49.5	2	75	4	65	40	3	9	47	1.51
9804244--9804333	16	5.5	16	76	5	81	40	3	10	46	1.54
9804244--9804342	18	5.6	18	80	7	87	40	3	9	47	1.51
9804244--9804342	20	5.2	20	74	11	73	40	3	9	47	1.51
9806623--9806648	3	8.7	3	100	0	52	30	0	0	69	0.89
9813154--9813198	22	2.1	21	83	4	54	64	0	0	35	0.94
9813507--9813538	16	2.0	16	100	0	64	50	0	12	37	1.41
9818724--9818784	20	3.1	20	77	13	63	55	26	0	18	1.42
9818725--9818788	19	3.4	18	78	8	56	53	28	0	18	1.45
9819908--9819949	20	2.2	19	87	8	59	30	2	4	61	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9820486--9820540	18	3.2	18	82	10	62	70	3	25	0	1.03
9828691--9828749	19	3.2	18	75	20	59	6	15	6	71	1.29
9828711--9828745	16	2.1	17	89	5	54	8	11	8	71	1.31
9832925--9832966	22	1.9	22	85	9	59	57	9	14	19	1.64
9838537--9838614	14	5.8	13	72	20	54	78	8	0	12	0.97
9838536--9838614	26	2.9	26	85	7	104	78	8	0	12	0.96
9839287--9839331	20	2.3	20	85	7	58	57	0	22	20	1.40
9839603--9839650	23	2.1	23	96	0	87	31	22	12	33	1.91
9839797--9840113	49	6.3	49	78	6	235	30	12	11	45	1.77
9839797--9840066	49	5.4	51	81	6	263	31	11	12	45	1.77
9840189--9840353	49	3.4	48	72	12	133	31	15	9	43	1.79
9842585--9842672	43	2.0	43	91	0	140	23	12	14	48	1.78
9842698--9842758	19	3.2	20	75	15	65	49	31	3	16	1.62
9842702--9842760	12	4.6	13	76	14	52	45	35	3	15	1.63
9842457--9843119	331	2.0	331	96	0	1211	33	19	8	38	1.83
9843035--9843140	7	16.3	7	72	12	57	44	33	2	18	1.65
9845242--9845285	20	2.2	20	87	0	61	34	4	18	43	1.70
9846414--9846451	19	2.0	19	94	0	67	42	23	10	23	1.85
9846435--9846693	64	4.0	65	74	10	201	33	13	12	40	1.81
9848226--9848282	26	2.2	26	84	6	71	10	17	0	71	1.12
9849096--9849212	27	4.3	27	68	19	80	36	12	7	42	1.72
9850331--9850473	3	46.3	3	72	16	82	67	2	2	27	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9850333--9850441	24	4.4	24	80	9	121	68	0	1	28	1.05
9850331--9850443	48	2.4	47	85	7	156	68	0	1	29	1.06
9850335--9850430	4	24.5	4	70	16	51	68	1	2	28	1.07
9850335--9850457	42	2.8	45	76	18	125	66	2	1	29	1.14
9850697--9850862	44	3.8	44	86	0	197	42	21	13	22	1.87
9854738--9854826	44	2.0	44	97	0	169	30	15	21	32	1.94
9862550--9862699	72	2.1	71	86	3	203	36	10	4	48	1.57
9862613--9862655	14	3.1	14	86	6	61	39	2	0	58	1.11
9862647--9862803	52	3.1	51	78	8	185	33	11	7	47	1.68
9862858--9862917	3	19.7	3	81	6	68	63	5	0	31	1.16
9863012--9863055	22	2.0	23	81	4	54	22	22	38	15	1.92
9863553--9863620	3	21.7	3	77	16	59	66	1	2	29	1.15
9863549--9863620	25	2.8	25	79	10	92	66	1	2	29	1.14
9869151--9869222	4	18.8	4	77	11	53	20	5	2	70	1.20
9869147--9869199	21	2.6	21	84	3	63	16	1	3	77	1.01
9878806--9878990	91	2.0	92	87	3	266	40	11	20	27	1.88
9881040--9881257	43	5.4	43	71	14	149	25	17	16	40	1.89
9881729--9881758	12	2.4	13	94	5	53	76	0	3	20	0.92
9886286--9886358	4	18.5	4	73	8	51	71	2	4	21	1.16
9891235--9891276	9	4.6	9	80	16	50	45	0	0	54	0.99
9891235--9891287	17	3.3	16	85	12	65	43	1	0	54	1.11
9893939--9894015	30	2.6	30	85	10	104	44	0	11	44	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9895482--9895534	24	2.2	24	89	3	79	11	13	1	73	1.18
9895468--9895535	24	2.6	26	79	11	77	13	11	1	73	1.17
9900809--9900849	22	1.9	22	90	5	66	19	14	0	65	1.26
9901677--9901748	11	6.5	10	74	17	54	79	1	8	11	1.00
9901688--9901735	21	2.2	21	85	7	60	81	0	8	10	0.88
9902774--9902882	32	3.4	32	68	14	89	26	19	9	44	1.80
9902938--9903020	34	2.5	34	84	5	98	21	15	8	54	1.68
9902877--9903119	131	1.9	131	86	5	348	21	20	9	48	1.78
9902924--9903119	33	6.0	33	72	11	98	21	18	10	49	1.77
9903206--9903294	33	2.7	31	79	6	88	25	20	7	46	1.77
9903581--9903639	30	2.0	30	86	0	82	27	27	25	20	1.99
9903581--9903621	15	2.7	15	100	0	82	24	34	26	14	1.94
9903678--9903713	8	4.6	8	89	6	56	25	0	5	69	1.10
9903678--9903713	15	2.3	16	90	4	56	25	0	5	69	1.10
9904725--9904789	30	2.2	30	83	5	78	26	0	7	66	1.19
9908442--9908484	17	2.4	18	80	3	52	67	4	6	20	1.33
9914549--9914583	17	2.1	17	88	0	52	51	0	0	48	1.00
9914554--9914592	20	2.0	21	85	10	55	46	0	0	53	1.00
9916157--9916217	2	30.5	2	86	0	86	54	3	0	42	1.17
9916217--9916245	2	14.5	2	100	0	58	51	0	48	0	1.00
9916424--9916503	40	2.0	40	92	0	133	41	11	15	32	1.82
9921105--9921261	81	2.0	80	97	1	296	55	10	10	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9922770--9922806	2	18.5	2	94	0	65	51	0	0	48	1.00
9924105--9924173	36	1.9	36	82	2	86	30	20	7	42	1.79
9925072--9925113	20	2.0	22	86	13	61	69	7	2	21	1.25
9925887--9925921	18	1.9	18	88	0	52	45	14	8	31	1.75
9929949--9930090	71	2.0	73	87	4	209	40	8	3	47	1.51
9930739--9930783	23	1.9	24	86	13	67	77	0	0	22	0.76
9930747--9930789	12	3.8	12	82	17	56	76	0	0	23	0.78
9930742--9930791	26	2.0	25	88	11	75	78	0	0	22	0.76
9931105--9932600	831	1.8	826	87	2	2266	36	10	13	39	1.80
9935137--9935174	18	2.0	18	90	10	58	55	0	10	34	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131