genome.fa.s2.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  99  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17713781--17713848	32	2.1	32	94	0	118	29	14	14	41	1.86
17713948--17714339	33	11.8	33	71	6	193	29	14	19	36	1.91
17714063--17714339	99	2.8	99	79	1	295	31	13	19	35	1.91
17714065--17714371	99	3.1	99	78	2	251	30	13	19	36	1.90
17714593--17714730	33	4.3	33	75	5	138	29	11	18	40	1.86
17714593--17714792	33	6.2	32	72	6	125	32	13	17	37	1.88
17715685--17715730	19	2.5	20	82	13	62	8	13	0	78	0.97
17721631--17721693	17	3.6	17	70	16	56	0	20	11	68	1.20
17722553--17722645	14	6.3	16	68	25	55	22	2	0	75	0.91
17722554--17722645	31	3.1	30	73	17	86	22	2	0	75	0.92
17722557--17722637	22	3.6	22	72	20	78	24	2	0	72	0.96
17722559--17722645	8	10.4	8	75	14	59	22	2	0	74	0.93
17728242--17728642	127	3.2	127	70	13	358	33	14	15	35	1.89
17728183--17728727	252	2.2	252	86	2	745	33	14	15	35	1.89
17737927--17738074	42	3.6	42	83	8	162	31	20	10	37	1.87
17737963--17738079	39	2.9	39	82	9	146	29	20	10	39	1.86
17756253--17756279	5	5.4	5	100	0	54	62	0	37	0	0.95
17757374--17757622	128	1.9	128	98	0	480	33	4	13	48	1.63
17757660--17757707	15	3.1	15	77	14	53	43	0	0	56	0.99
17758108--17758146	20	2.0	20	89	0	60	48	0	0	51	1.00
17759992--17760022	15	2.1	15	100	0	62	19	0	45	35	1.51
17761338--17761375	2	19.0	2	88	0	58	47	0	5	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17761381--17761409	9	3.3	9	90	9	51	41	10	0	48	1.37
17762320--17762410	14	6.3	14	70	10	67	45	4	5	45	1.46
17762319--17762395	14	5.1	15	71	12	68	46	5	3	44	1.44
17762319--17762406	30	2.9	30	84	0	113	44	4	5	45	1.48
17762454--17762493	20	2.0	21	90	5	64	45	7	0	47	1.31
17772824--17772878	23	2.3	24	87	9	78	1	16	0	81	0.77
17774520--17774548	3	9.7	3	100	0	58	68	31	0	0	0.89
17778081--17778137	21	2.7	21	83	5	71	47	5	17	29	1.70
17780318--17780363	19	2.3	20	85	10	60	19	10	17	52	1.74
17788997--17789063	10	6.7	9	74	17	53	74	2	13	8	1.17
17788997--17789063	20	3.3	20	79	10	73	74	2	13	8	1.17
17789755--17789839	18	5.0	18	76	12	81	31	28	3	36	1.74
17789755--17789829	9	8.8	9	74	11	68	33	26	2	37	1.71
17789769--17789822	23	2.4	23	87	3	74	33	24	1	40	1.66
17789787--17789822	14	2.6	13	91	8	54	30	22	2	44	1.67
17789767--17789829	32	2.0	32	90	0	99	33	25	3	38	1.72
17791704--17791771	31	2.2	31	82	12	77	17	4	7	70	1.27
17791913--17791963	20	2.6	19	84	6	75	33	5	11	49	1.64
17792687--17792732	21	2.2	21	84	7	58	34	4	26	34	1.76
17792860--17792889	10	2.9	10	95	5	51	60	0	0	40	0.97
17793627--17793989	145	2.5	142	77	5	372	31	12	12	42	1.81
17795922--17795969	25	2.0	25	87	4	71	37	0	10	52	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17797027--17797056	4	7.5	4	92	0	51	20	0	3	76	0.92
17797027--17797059	12	2.8	12	95	0	57	18	0	6	75	1.00
17802671--17802752	39	2.1	39	86	2	110	42	10	20	25	1.85
17808184--17808210	14	1.9	14	100	0	54	51	7	0	40	1.30
17809649--17810477	144	5.7	143	80	4	747	40	10	14	34	1.80
17809649--17810478	289	2.9	288	80	4	904	40	10	14	34	1.80
17810980--17811081	37	2.8	37	80	5	143	34	19	14	31	1.92
17811228--17811342	37	3.1	37	84	0	158	35	19	13	32	1.90
17810984--17811431	126	3.5	127	82	4	519	36	16	14	33	1.89
17811275--17811612	91	3.7	91	85	1	421	34	17	13	34	1.89
17811275--17811613	92	3.7	92	86	1	418	34	17	13	34	1.89
17811977--17812039	32	2.0	32	83	0	81	31	9	17	41	1.82
17812365--17812441	37	2.1	37	83	7	95	58	14	11	15	1.63
17812686--17813005	34	9.5	35	73	11	188	35	15	18	31	1.92
17812699--17812945	99	2.4	103	78	7	240	34	16	16	32	1.91
17813148--17813304	34	4.7	33	72	10	122	29	14	20	35	1.92
17813460--17813528	22	3.1	22	85	0	84	28	21	17	31	1.96
17813575--17813643	31	2.2	31	84	5	86	31	15	15	36	1.90
17819013--17819079	30	2.2	30	86	0	98	26	14	28	29	1.96
17823055--17823115	27	2.2	27	82	2	68	11	19	3	65	1.38
17823446--17823807	144	2.5	143	83	4	426	42	11	13	32	1.81
17824617--17824697	19	3.9	21	75	10	60	72	4	0	22	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17824631--17824678	16	3.1	15	82	8	51	70	4	0	25	1.04
17824661--17824696	18	1.9	19	88	5	56	75	8	0	16	1.04
17824631--17824732	51	2.0	50	80	14	113	70	7	0	20	1.18
17824615--17824744	14	8.7	14	68	20	52	71	6	0	20	1.14
17825740--17825890	70	2.1	71	82	1	178	17	18	15	49	1.81
17826203--17826444	106	2.3	104	82	7	292	15	14	14	55	1.70
17826223--17826397	69	2.5	69	76	5	174	18	15	13	52	1.74
17826207--17826400	35	5.5	36	74	10	168	17	14	13	54	1.72
17826386--17826465	37	2.2	37	83	0	97	6	8	18	66	1.40
17826651--17827207	35	15.9	35	69	10	126	17	14	14	53	1.73
17826650--17827363	36	20.2	36	72	6	232	17	14	14	53	1.72
17826821--17827368	72	7.7	71	73	7	293	18	14	13	53	1.73
17826974--17827206	107	2.2	107	81	9	280	17	13	15	54	1.72
17827045--17827347	108	2.8	108	77	11	264	18	14	12	54	1.70
17827389--17827468	22	3.7	21	75	20	67	80	13	5	1	0.95
17827368--17827468	12	7.7	12	73	15	67	81	10	3	3	0.96
17827387--17827465	20	3.8	20	79	14	79	79	13	5	1	0.95
17827469--17827496	9	3.1	9	100	0	56	42	0	57	0	0.99
17828006--17828278	145	1.9	145	81	4	336	31	16	12	39	1.85
17831667--17831718	18	3.1	17	77	5	52	57	3	1	36	1.28
17837619--17837937	62	5.2	60	73	7	237	41	15	13	29	1.86
17837618--17837938	123	2.6	120	75	7	324	40	16	14	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17837651--17837987	185	1.8	184	80	4	410	38	15	14	31	1.88
17838001--17838327	102	3.2	101	77	8	345	37	14	13	33	1.86
17838372--17838453	43	1.9	43	87	2	121	36	17	12	34	1.87
17838372--17838496	42	3.0	42	80	5	126	36	17	11	35	1.86
17838476--17838664	101	1.9	101	87	4	283	42	15	12	29	1.83
17838023--17838788	408	1.9	407	82	3	966	39	15	14	31	1.87
17838868--17838916	22	2.2	22	88	0	71	42	10	18	28	1.83
17841702--17841748	21	2.2	21	80	0	58	27	10	21	40	1.86
17844855--17845438	161	3.6	159	75	9	407	31	11	15	41	1.83
17845023--17845511	161	3.1	157	75	8	375	30	12	15	41	1.84
17846888--17847049	33	4.8	33	74	8	128	28	16	17	38	1.91
17846939--17847102	66	2.5	66	79	4	161	28	15	17	38	1.90
17847026--17847103	33	2.4	33	86	0	111	25	12	21	39	1.89
17851108--17851161	19	2.7	19	91	5	81	25	11	9	53	1.66
17853155--17853525	191	1.9	191	91	1	600	41	11	7	39	1.70
17854127--17854208	41	2.0	41	90	0	128	28	8	21	41	1.82
17854318--17854383	28	2.3	28	81	2	69	39	10	9	40	1.71
17854431--17854898	234	2.0	234	98	0	900	32	9	14	44	1.77
17856715--17856784	34	2.1	34	100	0	140	50	5	8	35	1.57
17858423--17858490	24	2.9	24	77	2	66	39	2	13	44	1.59
17858586--17858617	14	2.3	14	100	0	64	71	0	0	28	0.86
17859389--17859424	3	12.0	3	100	0	72	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17862239--17862275	19	1.9	19	94	0	65	18	5	16	59	1.55
17867881--17867925	13	3.5	13	84	3	56	62	6	4	26	1.39
17867939--17868041	23	4.4	23	73	18	88	59	10	3	26	1.48
17867947--17868101	67	2.3	70	78	15	175	61	9	3	25	1.42
17868214--17868261	13	3.6	13	78	13	53	75	2	4	18	1.07
17870401--17870466	28	2.4	28	89	2	98	56	9	18	16	1.66
17872923--17873066	19	7.7	19	79	6	134	43	40	2	13	1.56
17872922--17873066	56	2.6	57	86	4	197	42	40	2	13	1.59
17872923--17873066	38	3.8	37	84	6	175	43	40	2	13	1.56
17872923--17873066	75	1.9	75	85	2	200	43	40	2	13	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131