genome.fa.s2.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  19  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4779965--4780064	50	2.0	50	92	0	164	26	16	19	39	1.91
4779798--4780237	217	2.0	219	90	2	688	24	15	21	39	1.91
4780484--4780550	7	8.7	7	75	14	53	20	4	1	73	1.09
4780490--4780589	23	4.5	23	72	14	84	20	6	1	73	1.11
4780517--4780576	27	2.2	28	80	16	74	20	6	1	71	1.17
4780583--4780647	29	2.2	29	97	0	121	21	7	3	67	1.30
4781510--4781558	21	2.3	21	83	13	73	20	4	0	75	0.96
4781565--4781853	61	4.8	59	77	13	261	46	5	11	37	1.62
4781634--4781852	119	1.8	123	84	5	304	46	5	12	35	1.65
4782670--4783320	326	2.0	326	98	0	1248	30	8	21	38	1.84
4783315--4783348	8	4.2	8	92	0	59	11	2	23	61	1.43
4784401--4784442	13	3.2	13	80	12	50	59	7	4	28	1.44
4784631--4784673	6	6.7	6	80	15	50	76	2	0	20	0.89
4784631--4784669	14	2.9	14	82	17	55	74	2	0	23	0.94
4784631--4784678	14	3.6	14	78	21	50	72	4	0	22	1.01
4786056--4786122	17	3.8	17	70	22	57	38	23	2	34	1.70
4795948--4795995	13	3.5	13	78	10	60	68	0	2	29	1.01
4795939--4795994	28	2.0	28	92	0	94	64	0	1	33	1.04
4795948--4795995	7	7.0	7	77	13	55	68	0	2	29	1.01
4800973--4801013	21	2.0	21	100	0	82	34	7	19	39	1.80
4802474--4802502	14	2.0	15	93	6	51	27	20	6	44	1.77
4806487--4806512	12	2.2	12	100	0	52	19	34	15	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4810421--4810448	2	14.0	2	100	0	56	50	0	0	50	1.00
4811644--4811713	30	2.3	30	85	7	88	35	27	2	34	1.72
4811894--4811922	2	14.5	2	100	0	58	51	0	48	0	1.00
4812638--4812708	35	2.0	35	97	0	133	25	15	19	39	1.91
4815012--4815043	2	16.0	2	100	0	64	0	50	0	50	1.00
4815983--4816007	4	6.2	4	100	0	50	52	0	0	48	1.00
4820129--4820163	18	1.9	18	88	0	52	28	22	22	25	1.99
4823050--4823082	13	2.6	13	90	4	50	78	18	3	0	0.87
4824382--4824437	17	3.2	17	76	19	53	41	0	0	58	0.98
4825351--4825397	19	2.5	20	86	10	71	51	0	6	42	1.27
4825581--4825609	14	2.0	15	93	6	51	55	0	0	44	0.99
4825579--4825612	14	2.5	13	86	13	50	52	0	0	47	1.00
4826654--4826755	30	3.4	30	76	14	84	43	4	3	48	1.43
4826674--4826755	31	2.7	29	76	16	85	41	3	3	51	1.37
4826774--4826807	16	2.2	16	89	5	52	50	0	0	50	1.00
4827280--4827322	18	2.3	19	88	11	63	60	2	0	37	1.10
4828372--4828416	21	2.0	23	87	8	67	62	0	2	35	1.08
4830366--4830400	17	2.1	18	89	10	56	31	40	8	20	1.82
4831377--4831408	3	10.7	3	100	0	64	65	0	0	34	0.93
4831779--4831847	29	2.3	29	92	4	113	65	4	1	28	1.21
4836122--4836182	3	20.3	3	100	0	122	32	0	0	67	0.91
4836318--4836363	22	2.1	22	84	11	60	69	4	0	26	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4838867--4838916	22	2.3	21	80	10	55	32	12	20	36	1.89
4845850--4845915	21	3.0	20	75	16	60	53	4	0	42	1.21
4845905--4845958	22	2.5	21	77	11	56	68	3	0	27	1.06
4847088--4847139	25	2.1	26	82	13	65	1	5	15	76	1.05
4847668--4847702	16	2.1	17	94	5	63	8	0	5	85	0.73
4853822--4853861	20	2.0	20	100	0	80	25	15	25	35	1.94
4855733--4855826	43	2.2	43	79	9	102	29	19	15	35	1.93
4856134--4856167	12	2.6	13	90	9	52	14	5	0	79	0.91
4857678--4857775	29	3.4	29	95	2	171	65	3	2	29	1.19
4864125--4864159	18	1.9	18	88	0	52	25	11	17	45	1.81
4866189--4866379	73	2.6	72	81	7	222	54	5	5	34	1.48
4866557--4866696	73	1.9	73	86	5	203	54	7	5	33	1.50
4868076--4868114	16	2.4	16	82	0	51	64	0	0	35	0.94
4868078--4868124	12	3.7	13	81	18	55	63	0	2	34	1.06
4868925--4868967	17	2.6	16	78	7	50	62	0	0	37	0.95
4871679--4871741	27	2.4	25	79	10	63	52	0	4	42	1.22
4871680--4871735	27	2.1	26	83	6	67	57	0	5	37	1.22
4872941--4872983	22	2.0	22	90	9	70	76	0	11	11	1.02
4873112--4873156	24	2.0	22	82	8	54	42	8	2	46	1.47
4873201--4873239	14	2.7	15	84	7	55	56	0	0	43	0.99
4873396--4873440	24	2.0	22	82	8	54	42	8	2	46	1.47
4873028--4873589	284	2.0	275	88	6	841	44	6	5	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4879157--4879189	16	2.1	16	88	5	50	45	0	0	54	0.99
4893410--4893520	54	2.1	54	96	0	204	27	11	29	31	1.92
4903240--4903303	34	1.9	34	90	6	105	23	6	9	60	1.50
4912306--4912338	16	2.2	15	89	10	50	72	0	9	18	1.10
4912474--4912519	18	2.6	18	85	0	56	43	0	2	54	1.12
4917081--4917470	101	4.0	101	73	16	422	45	9	15	30	1.78
4917155--4917541	190	2.0	190	99	0	765	46	9	16	27	1.77
4921041--4921065	4	6.2	4	100	0	50	76	24	0	0	0.80
4922080--4922112	11	3.0	11	87	12	50	72	0	0	27	0.85
4922793--4922822	13	2.3	13	94	0	51	43	6	3	46	1.46
4924548--4924615	30	2.3	30	84	5	84	51	1	7	39	1.39
4927440--4927490	24	2.1	24	88	0	75	56	9	13	19	1.65
4932613--4932669	27	2.2	25	84	6	69	59	0	0	40	0.97
4943315--4943339	7	3.6	7	100	0	50	40	16	12	32	1.84
4943314--4943348	14	2.5	14	85	0	52	40	20	8	31	1.82
4945521--4945553	16	2.1	16	88	11	50	3	0	15	81	0.80
4958187--4958218	13	2.4	13	94	5	55	90	3	6	0	0.53
4958994--4959169	3	65.0	3	67	19	75	31	3	3	60	1.34
4959029--4959169	5	27.4	5	71	13	83	34	4	3	58	1.35
4959029--4959169	41	3.6	37	73	15	115	34	4	3	58	1.35
4959008--4959169	11	15.5	11	72	15	96	33	4	3	58	1.35
4959615--4959655	20	2.0	20	90	0	64	26	2	19	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4959992--4960070	21	3.6	21	70	16	54	20	1	2	75	0.98
4959973--4960070	6	16.3	6	71	22	55	19	2	2	76	0.98
4959973--4960070	17	5.4	18	73	15	78	19	2	2	76	0.98
4960014--4960067	21	2.7	20	88	11	76	16	1	1	79	0.91
4960057--4960097	18	2.3	17	84	12	55	34	0	2	63	1.08
4960058--4960099	19	2.3	18	87	4	57	35	0	2	61	1.09
4965394--4965706	55	5.7	55	75	6	224	20	20	16	42	1.89
4965746--4965888	65	2.2	65	82	9	184	21	22	12	43	1.86
4966094--4966268	3	63.3	3	69	19	78	31	4	4	60	1.36
4966105--4966272	8	19.2	8	71	13	70	32	4	4	59	1.35
4966117--4966264	5	28.2	5	70	11	59	33	4	4	57	1.38
4972626--4972665	3	13.3	3	94	0	71	32	2	0	65	1.06
4982149--4982208	26	2.3	27	88	8	90	46	0	1	51	1.10
4982344--4982459	39	3.0	39	68	18	105	46	1	3	48	1.29
4985159--4985219	31	2.0	31	90	6	97	42	16	18	22	1.89
4987201--4987259	29	2.0	29	96	0	109	28	30	8	32	1.87
4989779--4989813	18	1.9	18	88	11	54	54	0	0	45	0.99
4989893--4989948	13	4.7	11	79	14	58	46	1	0	51	1.11
4989909--4989961	24	2.2	24	79	0	61	58	3	0	37	1.16
4990185--4990232	18	2.8	17	78	6	51	60	6	4	29	1.40
4990462--4990507	21	2.1	21	84	4	56	52	2	2	43	1.25
4991085--4991110	3	8.7	3	100	0	52	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4997345--4997379	2	17.5	2	87	0	52	51	5	0	42	1.25
5000162--5000221	23	2.7	22	79	5	68	41	13	6	38	1.70
5000364--5000418	17	3.2	17	84	0	74	38	12	21	27	1.90
5000495--5000528	17	2.0	17	88	11	52	29	14	8	47	1.75
5000962--5001003	19	2.3	19	88	12	61	47	2	9	40	1.49
5001038--5001087	21	2.4	21	90	9	77	46	14	6	34	1.69
5007586--5007644	27	2.1	29	85	14	81	44	1	0	54	1.10
5007593--5007644	13	3.8	14	77	12	63	46	0	0	53	1.00
5013682--5013783	52	1.9	53	88	5	154	31	15	4	48	1.67
5021701--5021893	102	1.9	102	93	0	332	31	20	19	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131