genome.fa.s2.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  102  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18210328--18210364	7	5.4	7	90	6	58	10	10	0	78	0.97
18210328--18210380	20	2.5	21	78	12	54	11	16	0	71	1.13
18212643--18212750	50	2.1	51	83	5	130	30	16	12	39	1.86
18212712--18212782	36	2.0	36	83	5	90	28	16	14	40	1.87
18212746--18213353	52	11.7	52	78	7	448	30	15	12	41	1.83
18212746--18213325	156	3.7	154	82	5	580	30	15	11	42	1.83
18218539--18218586	23	2.1	23	96	0	87	43	10	22	22	1.84
18222197--18222236	21	1.9	21	89	0	62	32	22	12	32	1.91
18227938--18227968	7	4.4	7	100	0	62	16	54	12	16	1.71
18232621--18232645	2	12.5	2	100	0	50	48	0	0	52	1.00
18234595--18234629	15	2.3	15	95	0	61	42	8	22	25	1.82
18240850--18240883	17	2.0	17	94	0	59	26	5	5	61	1.42
18242137--18242187	21	2.4	21	100	0	102	45	15	3	35	1.65
18242424--18242506	40	2.0	44	81	9	102	56	0	2	40	1.12
18243818--18243848	1	31.0	1	100	0	62	0	0	0	100	0.00
18266706--18266752	3	15.7	3	100	0	94	31	0	0	68	0.90
18272330--18272356	2	13.5	2	100	0	54	48	0	51	0	1.00
18278466--18278863	198	2.0	198	100	0	796	22	25	15	37	1.93
18279276--18279338	27	2.3	27	88	0	90	20	4	41	33	1.73
18282184--18282251	30	2.2	31	87	7	95	32	23	4	39	1.75
18295028--18295216	98	1.9	98	93	0	324	27	25	13	32	1.94
18296916--18296971	21	2.6	21	78	18	62	30	17	5	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18296916--18296971	22	2.6	22	81	18	66	30	17	5	46	1.71
18298479--18298532	26	2.0	26	82	10	65	38	3	5	51	1.43
18304797--18304854	19	3.1	19	78	11	66	43	15	1	39	1.57
18308410--18308527	61	1.9	60	81	10	141	38	8	4	49	1.53
18308470--18308928	109	4.2	109	78	9	354	40	8	4	45	1.57
18320071--18320112	14	3.0	14	82	10	59	21	0	7	71	1.09
18321236--18321260	13	1.9	13	100	0	50	24	0	4	72	1.02
18328534--18328560	9	3.0	9	100	0	54	55	22	0	22	1.44
18329911--18329950	14	2.6	15	84	15	55	0	20	0	80	0.72
18329911--18329954	16	2.9	15	83	13	54	0	20	0	79	0.73
18330014--18330083	27	2.6	27	95	0	131	30	27	7	35	1.83
18332067--18332109	18	2.2	20	84	12	54	67	16	0	16	1.24
18332995--18333302	100	3.1	100	75	17	237	41	6	8	44	1.60
18333211--18333287	40	1.9	39	82	7	93	38	3	11	45	1.59
18337472--18337498	9	3.0	9	100	0	54	55	22	0	22	1.44
18340963--18341005	18	2.2	20	84	12	54	67	16	0	16	1.24
18342034--18342058	13	1.9	13	100	0	50	48	0	8	44	1.32
18343666--18343713	24	1.9	24	87	8	69	20	0	31	47	1.50
18343666--18343713	12	3.8	12	80	5	51	20	0	31	47	1.50
18343723--18343780	17	3.5	16	81	6	71	18	3	32	44	1.67
18343730--18343852	55	2.2	55	82	5	142	22	3	30	43	1.69
18346235--18346278	21	2.0	22	95	4	81	43	0	22	34	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18346503--18346549	19	2.5	19	76	13	51	38	8	12	40	1.74
18353845--18353900	23	2.4	23	85	8	69	78	3	5	12	1.05
18354768--18354808	20	2.0	21	85	4	57	48	0	0	51	1.00
18354824--18354869	10	4.7	10	81	5	58	60	0	0	39	0.97
18355448--18355487	20	2.0	21	90	5	64	65	2	0	32	1.06
18355569--18355631	18	3.3	18	82	8	72	66	4	3	25	1.26
18355682--18355728	24	1.9	24	86	4	67	63	2	0	34	1.06
18355799--18355839	22	1.9	22	85	5	57	58	4	4	31	1.40
18356156--18356206	26	1.9	27	88	4	77	27	1	9	60	1.39
18356336--18356423	35	2.5	33	79	13	88	14	5	7	71	1.28
18356354--18356432	37	2.1	37	82	13	92	17	5	7	69	1.31
18356542--18356589	19	2.3	20	86	10	62	35	2	2	60	1.20
18356542--18356598	21	2.7	22	81	15	66	33	3	1	61	1.23
18360412--18360449	20	1.9	20	88	0	58	78	13	2	5	1.02
18362958--18363008	25	2.1	24	88	3	75	60	7	3	27	1.42
18363131--18363203	37	2.0	37	86	0	101	50	10	6	31	1.64
18366822--18367093	144	1.9	144	83	3	359	36	11	11	40	1.77
18367702--18367734	14	2.4	14	90	10	50	78	0	18	3	0.87
18383727--18383768	21	2.0	21	95	0	75	35	19	16	28	1.93
18384652--18384684	17	1.9	17	88	11	50	54	3	0	42	1.15
18384729--18384776	19	2.5	19	80	10	53	43	0	4	52	1.20
18384781--18384832	20	2.7	18	83	13	68	65	1	0	32	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18384787--18384834	21	2.3	21	86	10	64	68	2	0	29	1.01
18386382--18386425	14	3.1	14	76	0	52	52	0	0	47	1.00
18386909--18386983	39	1.9	39	88	0	114	13	13	36	37	1.84
18389207--18389260	21	2.6	21	84	0	63	27	3	38	29	1.74
18399563--18399602	18	2.2	19	86	4	55	72	10	5	12	1.26
18404857--18404908	22	2.4	22	90	0	77	50	7	5	36	1.55
18410976--18411092	58	2.0	58	93	0	198	35	5	12	45	1.67
18411483--18411629	46	3.2	46	84	2	181	34	7	15	42	1.75
18411668--18411717	13	3.7	13	86	5	64	78	6	0	16	0.95
18411997--18412026	15	2.0	15	93	0	51	20	10	20	50	1.76
18418188--18418227	13	2.9	14	88	7	64	80	0	5	15	0.88
18422938--18422987	25	2.0	25	88	7	75	48	4	8	40	1.51
18423140--18423196	26	2.2	26	81	6	71	36	7	10	45	1.66
18423277--18423309	17	1.9	17	93	0	57	81	3	15	0	0.80
18427009--18427063	11	4.8	11	75	20	51	78	1	16	3	0.98
18427419--18427538	33	3.6	33	74	16	113	75	0	20	4	0.96
18427418--18427480	14	4.1	14	75	20	56	77	0	19	3	0.90
18427418--18427524	24	4.6	23	75	17	73	77	0	17	4	0.93
18427418--18427533	22	5.0	24	69	22	86	76	0	18	4	0.94
18427464--18427533	20	3.7	19	77	14	65	78	0	17	4	0.90
18427418--18427538	46	2.6	46	78	18	126	76	0	19	4	0.95
18428963--18429143	41	4.4	41	84	4	213	25	12	17	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18428960--18429143	82	2.2	84	84	2	239	26	11	18	43	1.84
18428961--18429170	84	2.5	82	82	3	206	25	12	19	41	1.87
18429317--18429360	8	5.1	8	81	13	52	79	4	4	11	1.02
18430263--18430612	189	1.9	188	81	9	426	44	8	10	37	1.67
18432285--18432365	4	20.8	4	70	5	58	69	2	4	23	1.21
18432291--18432334	19	2.3	19	84	11	54	72	2	4	20	1.13
18432305--18432365	19	3.2	19	81	11	54	72	1	3	22	1.09
18433423--18433549	22	5.6	23	71	9	82	40	8	20	30	1.83
18433429--18433482	23	2.3	24	81	9	67	37	7	24	31	1.83
18433579--18433681	22	4.7	22	72	7	84	41	5	17	34	1.73
18433708--18433766	21	2.8	21	82	7	66	25	11	18	44	1.84
18434422--18434486	12	5.5	11	81	15	51	67	0	3	29	1.05
18434433--18434476	8	6.0	7	87	12	54	70	0	0	29	0.88
18434450--18434474	4	6.2	4	100	0	50	76	0	0	24	0.80
18434395--18434488	36	2.8	32	76	19	93	69	0	3	27	1.04
18435195--18435281	37	2.4	37	82	0	102	58	24	16	1	1.44
18436425--18436466	3	14.0	3	100	0	84	66	0	0	33	0.92
18436805--18436924	51	2.3	53	77	7	131	50	17	7	24	1.71
18436825--18436906	26	3.2	25	86	5	101	48	19	8	23	1.76
18436870--18436966	40	2.5	40	77	16	103	49	18	6	25	1.71
18440754--18440889	39	3.4	39	77	6	148	34	15	8	41	1.78
18441680--18441707	13	2.2	13	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18441680--18441715	19	1.9	19	88	5	56	27	0	0	72	0.85
18442547--18442616	31	2.2	31	85	10	88	67	8	2	21	1.31
18442597--18442676	5	16.2	5	74	14	60	75	5	1	18	1.06
18442568--18442669	50	2.0	51	78	16	115	73	5	0	19	1.09
18442570--18442638	31	2.3	29	81	18	79	73	5	1	18	1.10
18443502--18443653	3	51.7	3	72	13	120	62	6	2	28	1.34
18443910--18444089	55	3.3	55	71	8	168	40	14	21	23	1.90
18444948--18445102	63	2.5	62	79	11	156	12	16	8	62	1.53
18454259--18454297	21	1.9	19	85	10	51	58	7	7	25	1.52
18455652--18455748	19	4.4	21	70	20	65	72	5	2	20	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131