genome.fa.s2.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  90  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16334306--16334354	21	2.5	20	83	9	57	42	0	0	57	0.99
16334576--16334628	11	5.2	10	82	13	56	43	1	1	52	1.23
16334571--16334613	21	2.0	21	86	8	61	46	2	2	48	1.27
16334682--16334737	14	3.8	15	77	17	55	46	0	1	51	1.11
16334738--16334802	29	2.3	29	78	17	73	49	0	1	49	1.10
16334810--16334841	16	1.9	17	93	6	57	40	0	9	50	1.35
16334884--16334927	20	2.3	19	80	7	52	40	4	9	45	1.56
16335527--16335600	28	2.7	29	75	21	79	48	2	1	47	1.24
16336237--16336277	16	2.3	19	88	12	61	43	0	2	53	1.13
16336303--16336355	28	1.9	27	81	11	63	49	1	0	49	1.12
16336624--16336660	14	2.8	13	88	8	56	43	13	0	43	1.44
16336875--16336913	15	2.5	16	83	8	53	48	7	0	43	1.31
16336888--16336996	11	8.7	12	70	21	55	48	1	0	49	1.11
16336923--16336994	29	2.6	29	79	16	73	50	1	0	48	1.09
16337071--16337121	27	1.9	26	92	4	84	49	3	0	47	1.20
16337191--16337240	16	3.1	16	80	11	57	46	2	8	44	1.44
16337589--16337647	24	2.3	26	85	5	77	42	1	0	55	1.09
16337599--16337647	26	2.0	24	88	8	71	44	2	0	53	1.12
16337731--16337781	19	2.5	20	87	9	68	45	0	0	54	0.99
16337880--16337930	23	2.2	24	80	16	63	47	1	1	49	1.24
16337847--16337929	28	2.9	28	81	15	82	49	1	1	48	1.16
16339063--16339139	27	2.9	27	77	11	77	51	1	1	45	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16339116--16339165	23	2.1	25	85	7	68	46	2	0	52	1.12
16339155--16339229	26	2.9	26	73	11	66	40	1	2	56	1.22
16339241--16340311	177	5.9	175	76	9	866	40	7	10	41	1.68
16339744--16340360	182	3.4	180	79	6	622	39	8	9	41	1.69
16340377--16340415	14	2.7	15	84	7	55	53	0	0	46	1.00
16340409--16340442	14	2.4	14	90	0	50	32	2	0	64	1.08
16340641--16340674	16	2.1	17	88	5	52	52	2	2	41	1.31
16340716--16340764	20	2.4	21	80	16	59	46	0	2	51	1.12
16340718--16340773	28	2.0	29	82	10	71	44	0	1	53	1.11
16341014--16341576	177	3.2	178	78	7	543	40	9	7	41	1.68
16342407--16342717	158	2.0	155	89	1	478	41	7	8	42	1.64
16342914--16343315	181	2.2	180	80	7	447	41	10	6	40	1.67
16344227--16344310	23	3.6	22	70	16	62	48	1	2	47	1.22
16344259--16344316	16	3.5	16	77	17	57	53	0	1	44	1.10
16344463--16344520	29	2.0	29	83	9	75	51	0	0	48	1.00
16344477--16344520	14	3.1	14	81	12	54	45	0	0	54	0.99
16344490--16344534	23	1.9	24	81	4	56	48	2	0	48	1.13
16344519--16345496	181	5.4	180	74	11	732	42	10	7	39	1.67
16345621--16345688	27	2.4	28	73	11	68	58	4	1	35	1.27
16345623--16345689	26	2.6	27	72	13	68	58	4	1	35	1.28
16345833--16345871	19	2.2	18	90	9	62	43	5	0	51	1.24
16345905--16345937	17	2.0	16	94	5	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16347814--16347843	14	2.2	13	94	5	51	53	0	0	46	1.00
16348049--16348109	15	4.2	15	76	14	65	55	1	3	39	1.26
16348187--16348235	25	1.9	26	87	4	73	53	6	2	38	1.38
16348262--16348297	11	3.3	11	88	0	54	41	0	5	52	1.24
16348340--16348441	17	6.4	16	68	20	54	39	0	2	56	1.21
16349351--16349404	28	1.9	28	85	7	74	61	1	1	35	1.18
16349422--16349490	32	2.2	31	79	18	81	40	0	1	57	1.07
16349470--16349495	13	2.0	13	100	0	52	53	0	0	46	1.00
16349432--16349503	30	2.4	32	78	17	82	43	0	0	56	0.99
16349969--16350005	13	2.8	14	84	12	51	56	0	0	43	0.99
16349935--16350006	30	2.4	31	82	11	96	52	0	0	47	1.00
16349970--16350013	17	2.6	18	82	17	58	52	0	2	45	1.13
16350820--16350854	17	2.1	17	89	10	54	51	0	0	48	1.00
16350823--16350874	13	3.9	13	82	9	61	44	0	0	55	0.99
16350890--16350924	15	2.3	15	85	5	52	51	0	0	48	1.00
16350974--16351028	28	2.0	28	82	13	69	49	1	0	49	1.11
16351094--16351126	16	2.0	17	88	5	50	45	6	0	48	1.27
16351967--16352008	13	3.4	12	84	12	50	54	0	2	42	1.13
16353093--16353130	17	2.2	17	86	9	51	44	10	0	44	1.38
16353182--16353232	18	2.8	17	75	18	50	49	3	5	41	1.45
16353199--16353249	22	2.3	21	75	15	50	49	3	1	45	1.32
16353502--16353559	25	2.2	27	85	14	77	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16354922--16354982	25	2.4	26	76	20	67	49	1	0	49	1.10
16354931--16354969	14	2.7	15	84	11	55	51	0	0	48	1.00
16355626--16355678	25	2.1	25	100	0	106	33	3	7	54	1.46
16355586--16355748	86	1.9	86	86	5	231	44	2	5	47	1.39
16355585--16355766	86	2.1	86	81	7	210	46	2	4	46	1.36
16356215--16356265	15	3.5	15	76	7	52	47	0	0	52	1.00
16356204--16356256	20	2.6	20	81	3	52	47	0	1	50	1.12
16356259--16356308	14	3.6	14	76	15	50	50	0	0	50	1.00
16356230--16356289	23	2.6	22	73	19	52	46	0	0	53	1.00
16356270--16356325	19	3.1	19	73	14	55	51	0	0	48	1.00
16356288--16356326	15	2.5	15	83	4	51	48	0	0	51	1.00
16356302--16356330	12	2.3	13	94	5	51	51	0	0	48	1.00
16357237--16357275	19	2.0	20	85	5	53	53	0	0	46	1.00
16358828--16358877	24	2.0	25	84	3	66	48	0	2	50	1.12
16359079--16359119	21	2.0	20	85	4	55	41	2	4	51	1.36
16359531--16359648	6	19.0	6	68	20	66	47	0	1	50	1.17
16359531--16359617	14	6.2	13	72	16	59	47	1	1	50	1.16
16359531--16359637	56	1.9	56	83	14	141	47	0	0	50	1.13
16359743--16359785	15	2.8	16	86	6	54	44	0	0	55	0.99
16359754--16359822	22	3.1	22	77	8	77	47	0	0	52	1.00
16359741--16359802	13	4.5	13	77	16	54	48	0	0	51	1.00
16359743--16359820	26	2.9	27	73	17	74	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16360044--16360130	47	1.9	44	83	6	111	51	2	3	42	1.31
16360253--16360286	16	2.1	16	94	0	59	47	0	0	52	1.00
16360335--16360378	13	3.4	14	79	14	51	52	0	0	47	1.00
16360408--16361551	180	6.4	181	76	7	885	43	9	7	39	1.65
16360408--16361551	181	6.4	178	76	8	810	43	9	7	39	1.65
16360483--16361549	356	3.0	358	78	5	804	43	9	6	40	1.65
16362563--16375171	181	70.1	181	71	10	5453	39	8	10	41	1.69
16363042--16368643	538	10.5	528	72	11	1672	39	8	10	42	1.69
16362574--16377357	361	41.1	353	70	13	3480	39	8	10	41	1.69
16367682--16367977	158	1.9	158	82	3	382	39	9	11	40	1.73
16367917--16368643	177	4.1	176	74	9	521	37	7	11	42	1.70
16371697--16371732	18	1.9	19	88	5	56	47	5	13	33	1.67
16369942--16400663	897	34.0	891	69	13	6984	39	8	10	41	1.69
16374840--16375154	169	1.9	169	78	1	353	40	7	10	41	1.68
16375194--16377351	181	11.9	178	74	10	1429	40	8	9	41	1.68
16376084--16376944	182	4.6	194	77	8	493	41	8	8	41	1.66
16375194--16377355	363	6.0	359	75	10	1505	40	8	9	41	1.68
16377353--16378362	180	5.6	181	76	6	501	39	7	10	42	1.68
16377353--16378210	356	2.4	360	78	6	868	39	8	10	42	1.68
16377353--16378426	181	6.0	180	77	6	917	39	7	10	42	1.68
16378304--16378522	117	1.9	117	85	1	305	38	7	10	42	1.68
16379402--16380145	182	4.1	180	77	5	601	38	7	10	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16379519--16380145	180	3.5	179	77	5	586	38	7	10	43	1.68
16379667--16380611	476	2.0	472	81	6	1106	39	7	10	42	1.66
16380142--16387839	181	43.3	177	69	12	2141	39	8	10	41	1.69
16380206--16382816	534	4.9	533	78	7	1782	39	8	10	42	1.69
16380210--16382833	357	7.3	356	75	7	1890	39	8	10	42	1.70
16382864--16400663	181	98.6	181	70	12	4201	40	8	9	41	1.69
16382818--16400663	363	49.4	360	70	12	6694	40	8	9	41	1.69
16386171--16386203	18	1.9	17	88	11	50	48	6	6	39	1.53
16386886--16386933	16	2.7	18	75	15	55	41	8	8	41	1.65
16384820--16387740	540	5.4	540	75	10	1271	39	8	9	41	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131