genome.fa.s2.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  104  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18653734--18653762	14	2.1	14	93	6	51	62	0	0	37	0.96
18654324--18654374	18	2.8	18	78	3	57	27	3	3	64	1.28
18656159--18656210	3	17.3	3	100	0	104	67	0	0	32	0.91
18656383--18656433	26	2.0	26	85	14	70	33	31	19	15	1.93
18656592--18657142	120	4.6	120	81	4	535	44	15	21	17	1.86
18656582--18657153	239	2.4	238	78	8	599	44	15	22	18	1.86
18669000--18669063	3	21.3	3	100	0	128	67	0	0	32	0.91
18669460--18669487	14	2.0	14	100	0	56	35	7	7	50	1.57
18670233--18670268	2	18.5	2	94	5	65	50	0	0	50	1.00
18673673--18673712	21	1.9	21	90	10	64	30	0	0	70	0.88
18673832--18673868	18	2.1	18	94	0	65	45	0	0	54	1.00
18673853--18673991	27	4.9	28	75	15	99	42	0	3	53	1.23
18673836--18673995	45	3.6	43	76	18	132	44	0	3	51	1.21
18675101--18675135	16	2.2	16	89	0	52	60	0	5	34	1.21
18685567--18685634	21	3.3	21	66	4	66	36	19	16	27	1.93
18685568--18685648	41	2.0	41	100	0	162	38	17	14	29	1.90
18690325--18690349	13	1.9	13	100	0	50	40	0	4	56	1.18
18699432--18699463	2	16.0	2	93	0	55	50	3	0	46	1.17
18701615--18701673	3	19.7	3	96	0	109	66	0	1	32	1.02
18701575--18701746	6	28.2	6	71	12	64	71	6	1	20	1.15
18701696--18701734	19	2.2	17	86	9	51	76	10	2	10	1.10
18703687--18703733	21	2.2	23	77	14	55	59	14	14	10	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18703839--18703942	55	1.9	54	86	5	147	40	27	5	25	1.78
18707333--18707399	34	2.0	34	90	0	107	34	19	1	44	1.60
18709860--18709916	24	2.4	23	78	13	62	3	17	5	73	1.16
18713049--18713085	19	1.9	19	88	0	56	13	5	24	56	1.58
18713511--18713569	6	9.3	6	82	14	57	18	3	1	76	1.02
18713808--18713877	20	3.5	20	78	7	79	32	11	11	44	1.76
18713808--18713897	20	4.6	20	76	6	76	30	12	12	45	1.78
18713925--18713961	14	2.8	13	84	8	56	18	8	16	56	1.64
18713948--18713991	23	1.9	23	86	9	63	22	6	15	54	1.65
18720525--18720557	11	3.1	11	86	4	50	81	0	9	9	0.87
18720846--18720895	23	2.2	21	89	10	73	74	4	14	8	1.20
18720856--18720914	25	2.4	25	80	11	68	77	1	13	6	1.03
18722004--18722241	86	2.8	85	83	3	284	27	13	15	42	1.85
18722001--18722235	43	5.5	42	74	7	206	27	12	15	43	1.83
18722531--18722557	6	4.5	6	100	0	54	44	0	0	55	0.99
18722529--18722570	18	2.3	18	83	0	57	40	0	2	57	1.12
18722900--18723025	61	2.1	61	93	3	218	55	16	12	15	1.69
18725124--18725159	4	8.8	4	93	6	63	22	0	0	77	0.76
18725124--18725160	13	2.9	13	96	4	67	21	0	0	78	0.75
18726626--18726717	43	2.2	43	84	2	114	47	7	4	40	1.52
18733172--18733213	18	2.4	18	88	11	61	11	2	0	85	0.68
18734990--18735038	26	2.0	26	84	8	66	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18734988--18735035	17	2.8	18	75	15	57	33	0	0	66	0.92
18735370--18735462	22	4.3	21	73	16	66	7	18	1	73	1.13
18735383--18735462	23	3.5	23	80	14	78	6	20	1	72	1.13
18736277--18736338	22	2.8	22	70	27	58	6	12	6	74	1.21
18738693--18738726	4	8.5	4	93	0	59	29	0	20	50	1.49
18738689--18738723	16	2.2	16	100	0	70	31	0	17	51	1.45
18739147--18739171	8	3.1	8	100	0	50	64	0	0	36	0.94
18739672--18739704	15	2.2	16	89	10	52	36	3	0	60	1.12
18740013--18740057	10	4.5	10	88	0	54	46	15	8	28	1.76
18741932--18742072	46	3.1	45	82	8	160	46	34	0	17	1.54
18741964--18742049	33	2.6	33	81	3	93	44	38	1	16	1.55
18742017--18742066	13	3.9	13	81	2	57	48	34	2	16	1.57
18742032--18742098	32	2.1	32	83	5	82	50	32	1	14	1.52
18741966--18742098	7	20.4	7	62	14	52	47	34	1	16	1.56
18742089--18742135	19	2.5	19	79	3	60	46	36	0	17	1.48
18742141--18742208	35	2.0	34	85	8	93	29	11	7	51	1.65
18743064--18743115	9	5.7	9	78	13	61	80	0	7	11	0.89
18743064--18743114	18	2.7	20	85	11	72	80	0	7	11	0.90
18744172--18744226	24	2.3	24	93	0	83	14	5	14	65	1.44
18744172--18744237	24	2.8	24	88	4	80	15	4	13	66	1.40
18746701--18746842	66	2.2	66	93	1	250	25	15	10	48	1.77
18749347--18749411	7	8.2	8	76	20	57	76	0	13	9	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18749347--18749398	14	4.0	13	80	14	63	80	0	11	7	0.89
18750482--18750539	21	2.8	21	79	10	73	37	6	13	41	1.72
18750552--18750707	44	3.4	44	70	18	138	34	12	16	36	1.86
18750982--18751026	16	2.8	16	93	0	72	46	2	8	42	1.47
18751264--18751625	177	2.1	176	85	2	476	25	13	14	46	1.82
18751263--18751645	133	2.9	133	82	4	375	25	13	15	45	1.82
18751264--18751645	44	8.7	44	82	3	383	25	13	15	45	1.82
18751940--18752007	24	2.8	25	80	10	70	17	5	11	64	1.45
18752506--18752549	20	2.2	20	87	4	61	36	25	6	31	1.82
18752829--18752874	24	1.9	24	100	0	92	30	32	23	13	1.93
18752883--18752912	5	6.0	5	92	0	51	20	0	3	76	0.92
18756896--18756930	18	1.9	18	88	0	52	37	0	0	62	0.95
18757142--18757194	26	2.0	26	85	7	72	71	0	9	18	1.12
18758434--18758473	20	2.0	21	90	5	64	30	2	0	67	1.04
18763712--18763754	14	2.8	15	86	10	52	44	11	2	41	1.53
18764100--18764243	74	2.0	74	92	1	245	24	14	6	54	1.63
18766074--18766114	17	2.4	17	88	8	57	48	7	9	34	1.64
18780467--18780518	17	3.3	16	75	22	56	71	5	1	21	1.17
18782439--18782532	30	3.2	28	82	8	91	51	29	0	19	1.47
18782650--18782679	14	2.1	14	93	0	51	43	20	3	33	1.68
18786459--18786512	16	3.4	16	84	0	72	22	24	3	50	1.65
18788119--18788177	25	2.3	26	88	2	84	79	0	11	8	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18788129--18788177	18	2.8	18	81	3	55	81	0	12	6	0.86
18788486--18788559	4	17.8	4	71	18	53	29	1	2	66	1.14
18788453--18788579	20	5.8	21	69	19	64	29	3	3	62	1.28
18788520--18788580	22	2.7	23	82	12	83	29	0	6	63	1.19
18788521--18788585	23	2.7	24	79	13	71	29	0	6	64	1.17
18788486--18788580	44	2.1	44	82	5	111	29	1	4	65	1.18
18789008--18789044	19	1.9	19	88	0	56	29	10	18	40	1.85
18789106--18789142	11	3.4	11	85	14	58	16	21	27	35	1.94
18789137--18789176	20	2.0	20	90	0	62	22	15	22	40	1.91
18789515--18789556	13	3.2	13	86	6	59	16	0	2	80	0.81
18789515--18789582	30	2.3	30	84	5	84	22	0	4	73	1.01
18789516--18789556	17	2.5	17	88	4	66	14	0	2	82	0.76
18789576--18789657	16	5.1	16	74	4	76	13	7	1	78	1.02
18789586--18789667	42	2.0	42	81	13	98	13	7	2	76	1.09
18789618--18789667	16	3.1	16	80	11	57	14	6	2	78	1.03
18789684--18790252	59	9.7	57	86	6	766	44	7	12	35	1.71
18795486--18796082	43	14.1	42	88	3	855	23	17	22	36	1.94
18795486--18796082	169	3.5	169	88	2	864	23	17	22	36	1.94
18796363--18796432	4	16.8	4	72	19	54	30	0	2	67	1.05
18796380--18796455	22	3.4	23	77	13	79	28	0	5	65	1.14
18796363--18796447	44	1.9	44	83	4	109	29	0	4	65	1.12
18796396--18796456	23	2.8	21	75	9	59	26	0	6	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18796881--18796917	19	1.9	19	100	0	74	32	13	16	37	1.87
18797155--18797180	12	2.2	12	100	0	52	23	50	26	0	1.50
18797317--18797359	13	3.4	13	83	6	61	18	0	2	79	0.85
18797317--18797362	17	2.7	17	82	0	65	19	0	2	78	0.86
18797323--18797362	21	1.9	21	94	0	71	20	0	2	77	0.88
18797323--18797358	4	8.8	4	87	6	54	19	0	2	77	0.88
18797383--18797448	17	4.2	16	72	16	59	13	7	1	77	1.05
18797375--18797431	27	2.1	27	81	12	64	15	7	1	75	1.10
18797397--18797448	18	2.9	18	75	13	54	13	5	1	78	1.01
18797430--18797471	22	1.9	22	85	9	59	14	11	2	71	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131