genome.fa.s2.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  20  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5024924--5024976	22	2.4	22	83	3	61	64	16	13	5	1.47
5027029--5027059	2	15.5	2	93	0	53	45	0	3	51	1.17
5027228--5027306	34	2.3	35	91	4	133	25	6	2	65	1.29
5028358--5028399	8	4.9	9	81	18	54	21	0	2	76	0.90
5029113--5029142	14	2.1	14	93	0	51	56	0	6	36	1.26
5034589--5034629	20	2.0	20	85	0	55	26	12	19	41	1.87
5034032--5034624	289	2.1	289	91	0	954	34	11	9	44	1.74
5035020--5035075	27	2.0	28	83	10	71	42	1	0	55	1.10
5035057--5035135	21	3.5	22	72	24	76	40	2	2	54	1.27
5046975--5047030	20	2.9	19	84	7	69	62	1	1	33	1.16
5055517--5055546	13	2.4	12	94	5	51	83	3	13	0	0.77
5057323--5057392	14	4.7	15	78	8	81	18	0	28	52	1.45
5057435--5057480	14	3.2	14	78	6	56	19	0	28	52	1.47
5057823--5057882	23	2.6	22	82	10	59	28	1	3	66	1.17
5057864--5057902	16	2.6	14	85	14	60	35	0	0	64	0.94
5057869--5057911	16	2.8	16	92	3	70	32	0	0	67	0.91
5057864--5057920	14	3.9	15	84	8	73	31	0	0	68	0.90
5057987--5058032	8	5.5	8	82	7	56	80	2	0	17	0.81
5057987--5058033	17	2.8	17	80	0	58	80	2	0	17	0.80
5059100--5059141	21	2.0	21	90	0	66	47	2	0	50	1.14
5059095--5059127	12	2.8	12	95	0	57	45	0	0	54	0.99
5059305--5059403	37	2.7	36	71	12	83	53	9	17	20	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5059633--5060163	239	2.2	238	83	4	649	47	12	19	20	1.81
5059633--5060252	239	2.6	238	79	6	630	47	12	19	20	1.81
5060150--5060339	102	1.9	102	82	3	240	47	12	20	20	1.81
5060363--5060514	35	4.5	33	75	9	110	47	12	18	21	1.81
5060389--5060516	69	1.9	68	83	4	168	49	13	16	21	1.79
5060555--5060687	22	6.1	22	80	7	146	30	15	23	30	1.95
5060558--5060695	44	3.2	44	80	7	165	29	15	23	31	1.95
5060836--5060944	41	2.7	41	92	2	175	31	15	18	34	1.92
5061249--5061360	41	2.7	41	83	0	134	35	15	19	29	1.92
5061285--5061316	15	2.1	15	94	0	55	46	12	18	21	1.82
5061666--5061720	29	1.9	28	88	3	83	43	10	23	21	1.84
5061759--5061837	33	2.4	33	95	0	140	31	20	21	26	1.98
5061842--5061913	33	2.2	33	82	5	92	36	9	18	36	1.83
5061901--5061956	29	1.9	29	96	0	103	30	16	28	25	1.96
5061903--5061966	29	2.2	28	89	8	94	26	15	29	28	1.96
5061960--5062053	31	3.0	31	84	3	125	28	21	19	30	1.97
5061949--5062061	32	3.6	31	79	7	120	27	22	19	30	1.98
5063917--5063970	14	3.7	15	85	9	76	18	0	27	53	1.45
5063908--5063979	28	2.4	31	81	11	96	19	0	26	54	1.45
5063974--5064024	22	2.3	21	83	9	66	17	0	29	52	1.45
5065998--5066026	5	5.8	5	100	0	58	82	17	0	0	0.66
5066023--5066052	12	2.6	11	90	10	51	66	16	0	16	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5070725--5070767	20	2.2	20	92	8	72	48	0	0	51	1.00
5075628--5075666	20	2.0	19	85	5	51	53	7	7	30	1.57
5077074--5077265	103	1.9	102	81	5	235	27	11	18	42	1.85
5077071--5077354	49	5.7	48	71	10	151	31	11	16	40	1.85
5076974--5077328	152	2.4	151	77	8	364	30	12	17	39	1.87
5077383--5077466	43	2.0	42	83	9	107	35	14	11	38	1.83
5077668--5077712	3	15.0	3	86	9	65	35	2	0	62	1.08
5077956--5078003	18	2.6	18	83	3	60	66	8	10	14	1.43
5078817--5078857	21	1.9	22	95	5	75	70	0	4	24	1.06
5080063--5080099	3	12.3	3	100	0	74	32	0	0	67	0.91
5081105--5081143	15	2.5	15	87	8	51	0	23	0	76	0.78
5081105--5081143	20	2.0	19	95	5	69	0	23	0	76	0.78
5085337--5085373	7	5.4	7	84	15	51	24	0	0	75	0.80
5085337--5085368	15	2.2	14	94	5	55	21	0	0	78	0.76
5085337--5085375	13	2.9	14	85	14	55	25	0	0	74	0.82
5085480--5085526	20	2.5	18	86	6	58	51	2	0	46	1.13
5085508--5085556	25	2.0	25	83	0	62	40	2	0	57	1.10
5085535--5085585	17	2.8	19	80	16	63	49	0	0	50	1.00
5089863--5089915	23	2.2	23	80	16	63	52	0	1	45	1.11
5090301--5090365	30	2.2	30	88	5	96	52	1	1	44	1.19
5102862--5102892	2	15.5	2	100	0	62	48	0	0	51	1.00
5112120--5112149	3	10.0	3	92	0	51	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5112591--5112691	51	2.0	51	90	3	159	32	15	14	36	1.89
5113015--5113064	3	17.3	3	87	8	77	32	0	2	66	1.03
5113164--5113218	20	2.8	20	70	24	55	54	7	3	34	1.46
5125472--5125556	40	2.1	40	86	0	116	24	11	17	45	1.82
5125658--5125825	39	4.3	39	86	0	210	25	10	21	42	1.85
5126897--5126950	23	2.4	22	79	11	56	18	0	11	70	1.16
5127157--5127198	14	2.9	14	83	16	59	78	0	0	21	0.75
5127157--5127200	21	2.2	20	87	4	61	79	0	0	20	0.73
5131553--5131638	21	4.2	20	81	11	86	52	2	2	43	1.26
5131562--5131639	20	3.8	20	83	5	84	53	1	2	42	1.22
5131582--5131648	21	3.3	19	81	10	62	55	4	1	38	1.29
5131584--5131650	20	3.3	19	81	8	62	53	4	1	40	1.30
5131659--5131697	20	2.0	19	85	5	51	35	5	0	58	1.20
5131685--5131816	20	6.4	20	72	15	99	54	6	1	37	1.36
5131685--5131731	21	2.3	20	86	10	69	61	4	2	31	1.27
5131737--5131834	10	10.1	9	71	12	52	54	6	3	36	1.41
5131992--5132030	20	2.0	20	84	0	51	46	2	2	48	1.29
5132003--5132130	63	2.0	63	80	4	143	28	5	5	60	1.41
5132135--5132448	10	31.7	10	64	16	59	34	2	5	57	1.35
5132149--5132220	27	2.7	27	79	18	71	36	4	2	56	1.33
5132193--5132259	20	3.2	21	80	14	75	37	4	2	55	1.36
5132177--5132334	68	2.3	68	81	7	169	37	3	4	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5132293--5132347	20	2.8	20	78	13	69	29	0	9	61	1.26
5132256--5132335	29	2.8	29	77	7	74	36	3	6	53	1.44
5132293--5132405	20	5.8	20	72	8	65	30	0	9	60	1.29
5132399--5132450	23	2.3	23	93	6	88	28	0	5	65	1.16
5134798--5134837	17	2.3	18	80	20	50	52	2	2	42	1.28
5135219--5135274	29	2.0	28	82	3	67	42	5	0	51	1.24
5136443--5137086	59	10.9	59	84	9	794	33	13	8	44	1.73
5136438--5137075	295	2.2	294	89	4	971	33	13	8	44	1.74
5137266--5137297	5	6.4	5	96	0	55	0	34	43	21	1.53
5137522--5137573	20	2.6	19	82	8	68	25	21	25	28	1.99
5137564--5137603	11	3.7	11	83	6	55	20	27	35	17	1.95
5137607--5137647	20	2.1	20	86	4	57	21	21	29	26	1.99
5137717--5137770	25	2.2	25	86	6	74	33	18	7	40	1.78
5138123--5138301	3	58.3	3	71	22	76	63	5	1	29	1.24
5138481--5138577	1	97.0	1	80	0	86	5	0	7	87	0.66
5138481--5138579	14	7.0	14	79	7	103	5	0	8	86	0.69
5138584--5139119	42	13.0	42	88	6	717	37	22	17	22	1.94
5138584--5139119	82	6.5	79	86	9	682	37	22	17	22	1.94
5140142--5140227	17	4.8	18	78	15	81	11	12	0	75	1.05
5140136--5140220	28	3.1	27	77	16	77	10	14	0	75	1.05
5140142--5140227	9	9.6	10	76	19	52	11	12	0	75	1.05
5140124--5140212	46	1.9	46	91	8	146	11	16	0	71	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5140131--5140227	8	11.2	8	77	20	72	11	14	0	74	1.08
5140197--5140239	9	4.8	9	85	8	52	9	2	2	86	0.76
5140180--5140237	17	3.3	18	85	4	66	12	6	1	79	1.00
5147437--5147483	15	3.1	15	90	3	76	48	4	25	21	1.68
5150635--5151265	57	11.1	57	87	8	894	34	12	7	45	1.71
5151660--5151697	20	1.9	20	94	0	67	23	18	26	31	1.97
5151661--5151705	20	2.3	20	88	3	65	26	22	24	26	2.00
5152343--5152394	3	17.3	3	78	21	56	67	1	1	28	1.12
5152343--5152408	30	2.2	30	87	12	93	66	3	3	27	1.21
5153546--5153599	21	2.7	20	80	8	58	83	3	1	11	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131