genome.fa.s2.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  84  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15313512--15313564	26	2.0	26	92	0	88	26	22	20	30	1.98
15316109--15316161	26	2.0	26	89	7	81	30	24	16	28	1.97
15317003--15317055	26	2.0	26	96	0	97	26	24	20	28	1.99
15317890--15317939	26	1.9	26	92	8	84	26	22	20	32	1.98
15318784--15318836	26	2.0	26	92	0	88	30	24	18	26	1.98
15315938--15332942	897	19.0	901	85	3	21004	26	24	23	25	2.00
15322367--15322418	26	2.0	26	88	0	77	28	26	17	26	1.97
15325052--15325102	26	2.0	26	92	0	84	29	27	17	25	1.98
15325954--15326006	26	2.0	26	85	0	70	30	26	16	26	1.97
15326850--15326902	26	2.0	26	92	0	88	30	24	18	26	1.98
15327740--15327792	26	2.0	26	82	7	63	28	22	18	30	1.98
15328340--15328400	30	2.0	30	100	0	122	54	6	16	22	1.65
15328672--15328722	26	2.0	26	100	0	102	25	27	19	27	1.99
15329546--15329599	26	2.1	26	89	6	83	25	22	20	31	1.98
15330443--15330496	26	2.1	26	96	0	99	24	24	22	29	1.99
15331338--15331390	26	2.0	26	92	0	88	26	26	20	26	1.99
15332231--15332283	26	2.0	26	96	0	97	32	26	15	26	1.95
15333913--15333965	26	2.0	26	92	0	88	26	28	18	26	1.98
15334388--15334444	26	2.2	26	87	6	80	63	8	3	24	1.39
15333939--15341595	874	8.7	872	84	5	9595	25	24	24	25	2.00
15339261--15339310	26	2.0	26	92	7	86	30	30	12	28	1.92
15339303--15341593	866	2.6	877	86	4	2822	26	23	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15341414--15341784	187	2.0	187	89	2	566	38	18	17	25	1.92
15342037--15344962	708	4.1	717	85	3	3872	26	23	23	26	2.00
15345069--15345119	26	2.0	26	96	0	93	25	29	17	27	1.98
15345978--15346027	26	1.9	26	91	0	82	24	26	22	28	1.99
15344202--15346736	904	2.8	894	86	3	3517	25	24	23	26	2.00
15346710--15346762	26	2.0	26	96	0	97	24	26	22	26	2.00
15346004--15350354	711	6.1	718	86	3	5834	26	23	23	26	2.00
15351352--15351404	26	2.0	26	96	0	97	24	26	22	26	2.00
15349591--15352494	901	3.2	887	87	3	3907	25	24	24	25	2.00
15352251--15352303	26	2.0	26	88	0	79	28	22	18	30	1.98
15353402--15353454	26	2.0	26	96	0	97	28	26	18	26	1.98
15354273--15354320	25	1.9	25	100	0	96	25	29	20	25	1.99
15352495--15356093	904	4.0	889	85	5	4349	25	25	24	24	2.00
15355886--15356252	159	2.3	158	83	3	443	19	29	28	22	1.98
15356226--15356278	26	2.0	26	92	0	88	26	22	20	30	1.98
15357096--15359312	711	3.1	707	87	4	3095	26	23	23	26	2.00
15359422--15359474	26	2.0	26	100	0	106	26	26	20	26	1.99
15360291--15360410	59	2.0	59	95	0	213	22	26	25	25	2.00
15364975--15365025	26	2.0	26	84	0	66	25	25	21	27	1.99
15365874--15365926	26	2.0	26	92	0	88	32	24	15	28	1.95
15366942--15366994	26	2.0	26	92	0	88	26	26	18	28	1.98
15368722--15368774	26	2.0	26	92	0	88	26	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15366067--15371811	877	6.4	902	83	5	6568	25	24	24	25	2.00
15371406--15371458	26	2.0	26	96	0	97	32	26	15	26	1.95
15372584--15372634	26	2.0	26	88	7	77	27	25	15	31	1.96
15373280--15373305	12	2.2	12	100	0	52	0	57	26	15	1.38
15374146--15374505	151	2.3	155	81	6	392	20	26	28	23	1.99
15374479--15374531	26	2.0	26	96	0	97	24	26	20	28	1.99
15375380--15375431	26	2.0	26	100	0	104	26	26	19	26	1.99
15376245--15376295	25	2.0	26	96	3	95	31	21	15	31	1.95
15376784--15376817	16	2.1	16	100	0	68	41	5	11	41	1.66
15378010--15378062	26	2.0	26	92	0	88	28	24	18	28	1.98
15375929--15380610	902	5.2	899	85	3	5690	26	24	23	25	2.00
15379816--15379866	26	2.0	26	92	0	84	27	25	17	29	1.98
15381403--15381455	26	2.0	26	92	0	88	28	22	20	28	1.99
15381989--15382041	26	2.0	26	85	7	72	28	20	22	28	1.99
15383775--15383827	26	2.0	26	92	0	88	28	24	20	26	1.99
15384669--15384721	26	2.0	26	92	0	88	32	24	15	28	1.95
15381552--15388693	893	7.9	888	85	4	8116	25	24	23	25	2.00
15386464--15386514	26	2.0	26	92	0	84	27	21	17	33	1.96
15387352--15387402	26	2.0	26	96	0	93	27	21	19	31	1.97
15387644--15387775	65	2.0	66	91	1	212	25	15	24	34	1.95
15388304--15388356	26	2.0	26	89	7	81	30	28	15	26	1.96
15388437--15388462	11	2.4	11	100	0	52	26	38	23	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15390188--15390240	26	2.0	26	92	0	88	28	24	18	28	1.98
15390552--15391113	280	2.0	281	86	3	783	37	20	15	27	1.92
15391368--15391417	26	1.9	26	91	0	82	26	18	20	36	1.95
15392645--15392670	11	2.4	11	100	0	52	19	30	30	19	1.96
15391477--15393452	888	2.2	874	85	3	2686	25	25	24	25	2.00
15395059--15395110	26	2.0	26	96	0	95	28	26	17	26	1.97
15395953--15396005	26	2.0	26	96	0	97	24	26	20	28	1.99
15393494--15399656	887	6.9	884	83	6	7047	25	24	23	26	2.00
15397733--15397807	26	2.9	26	100	0	150	29	26	16	28	1.96
15399535--15399587	26	2.0	26	92	0	88	28	20	22	28	1.99
15400269--15401825	701	2.2	701	89	3	2358	26	24	22	26	2.00
15402021--15402073	26	2.0	26	96	0	97	26	24	20	28	1.99
15402800--15402852	26	2.0	26	88	0	79	30	24	16	28	1.97
15404567--15404618	26	2.0	26	100	0	104	26	26	19	26	1.99
15403057--15405172	899	2.4	901	88	2	3041	27	23	23	26	2.00
15404945--15405438	245	2.0	245	90	1	776	38	16	17	27	1.91
15405190--15407041	705	2.6	709	86	3	2502	28	23	21	25	1.99
15408012--15408064	26	2.0	26	89	7	81	30	24	16	28	1.97
15409760--15409811	26	2.0	25	85	3	68	30	19	21	28	1.97
15410632--15410682	26	2.0	26	92	0	84	31	25	13	29	1.94
15411534--15411586	26	2.0	26	100	0	106	26	26	20	26	1.99
15409474--15417707	902	9.2	902	86	2	10439	25	24	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15413338--15413390	26	2.0	26	96	0	97	24	22	20	32	1.98
15414232--15414284	26	2.0	26	88	0	79	32	22	16	28	1.96
15415134--15415184	26	2.0	26	92	0	84	31	25	15	27	1.96
15416930--15416980	26	2.0	26	92	0	84	31	21	17	29	1.96
15418541--15418593	26	2.0	26	96	0	97	28	26	18	26	1.98
15419421--15419472	26	2.0	26	88	0	77	36	21	13	28	1.91
15420822--15421176	159	2.2	159	80	4	358	21	26	29	22	1.99
15421150--15421202	26	2.0	26	92	7	90	24	20	24	30	1.99
15422042--15422094	26	2.0	26	96	0	97	28	26	18	26	1.98
15422930--15422982	26	2.0	26	100	0	106	26	26	20	26	1.99
15423832--15423884	26	2.0	26	92	0	88	26	22	20	30	1.98
15424735--15424787	26	2.0	26	96	0	97	26	24	20	28	1.99
15421176--15432429	900	12.5	875	74	12	7869	25	24	24	25	2.00
15426484--15426536	26	2.0	26	88	0	79	32	26	15	26	1.95
15426571--15426764	98	2.0	98	83	2	246	15	26	31	25	1.96
15427472--15427524	26	2.0	26	92	0	88	24	24	22	28	2.00
15428372--15428424	26	2.0	26	96	0	97	26	24	20	28	1.99
15429268--15429318	26	2.0	26	92	0	84	29	27	17	25	1.98
15429107--15429484	185	2.0	185	81	2	427	19	27	28	24	1.99
15433309--15433361	27	2.0	27	92	0	88	3	32	35	28	1.75
15433428--15437674	872	4.9	863	84	4	5347	26	24	23	25	2.00
15436007--15436059	26	2.0	26	92	0	88	28	24	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15436905--15438249	704	1.9	706	88	3	2033	28	23	22	25	1.99
15439257--15439306	26	1.9	26	95	0	91	26	26	20	28	1.99
15438445--15441715	857	3.8	851	83	6	3642	25	24	24	26	2.00
15441689--15441741	26	2.0	26	100	0	106	26	26	20	26	1.99
15441715--15443190	714	2.1	714	88	2	2198	26	23	23	27	2.00
15443303--15443355	26	2.0	26	92	0	88	26	22	20	30	1.98
15444195--15444247	26	2.0	26	88	0	79	30	24	16	28	1.97
15442434--15447054	901	5.1	903	87	2	6167	25	24	23	25	2.00
15445104--15445156	26	2.0	26	96	0	97	30	24	16	28	1.97
15446011--15446063	26	2.0	26	85	0	70	30	24	16	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131