genome.fa.s2.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  77  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14281754--14281865	20	5.5	21	76	19	96	67	1	1	28	1.10
14281762--14281874	37	3.1	38	75	14	110	65	2	1	30	1.16
14281750--14281867	52	2.2	56	77	17	126	67	1	1	28	1.10
14281832--14281874	23	1.9	22	85	4	59	60	4	0	34	1.17
14281772--14281873	14	6.6	16	74	19	76	65	2	0	30	1.14
14281910--14281963	9	5.5	10	80	14	51	62	7	0	29	1.22
14281921--14281975	28	2.0	28	82	7	67	72	5	0	21	1.04
14282143--14282170	11	2.5	11	100	0	56	0	0	14	85	0.59
14282131--14282167	19	1.9	19	89	10	58	2	0	16	81	0.81
14282178--14282266	41	2.1	42	89	2	135	31	24	19	24	1.98
14282205--14282326	61	2.0	60	96	1	226	34	21	18	25	1.96
14282266--14282650	42	9.5	42	86	9	559	35	22	17	24	1.95
14282266--14282650	83	4.8	83	87	8	587	35	22	17	24	1.95
14282339--14282648	156	2.0	156	93	1	532	35	22	17	24	1.95
14283860--14283899	15	2.7	15	88	3	55	2	12	0	85	0.71
14283848--14283929	34	2.3	37	83	10	107	6	14	0	79	0.92
14283839--14283905	8	8.0	8	77	9	71	4	11	0	83	0.78
14283876--14283933	19	3.2	19	79	13	68	5	17	0	77	0.94
14287830--14288169	59	5.7	59	83	7	440	33	13	7	45	1.72
14287830--14288168	124	2.8	118	84	8	436	33	13	7	45	1.72
14288202--14288274	8	8.9	8	82	11	94	83	0	2	13	0.75
14288190--14288291	27	3.9	25	80	14	100	79	0	5	14	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14288195--14288274	26	3.1	27	78	21	77	82	0	3	13	0.80
14288202--14288285	27	2.8	31	78	15	113	82	0	3	14	0.81
14289208--14289304	31	3.2	30	78	12	101	64	2	8	24	1.32
14289232--14289353	31	4.4	28	74	19	87	68	1	4	25	1.19
14289301--14289360	17	3.6	16	86	8	75	71	1	0	26	0.95
14289311--14289374	14	4.8	13	80	19	71	67	1	0	31	1.00
14289334--14289385	17	3.2	17	82	17	58	61	3	0	34	1.14
14289337--14289385	15	3.2	16	83	16	52	61	4	0	34	1.15
14289417--14289470	9	5.5	10	80	14	51	62	7	0	29	1.22
14290451--14290503	26	2.0	26	92	0	88	28	18	24	28	1.98
14291320--14291372	26	2.0	26	85	0	70	28	22	24	24	2.00
14292210--14292262	26	2.0	26	96	0	97	28	20	24	26	1.99
14289738--14293030	890	3.7	884	85	5	4424	25	23	23	26	2.00
14294534--14294584	26	2.0	26	96	0	93	27	13	27	31	1.94
14296307--14296356	26	1.9	26	95	0	91	30	20	24	26	1.98
14296537--14296562	12	2.2	12	100	0	52	7	26	65	0	1.20
14297213--14297265	26	2.0	26	96	0	97	26	20	24	28	1.99
14295436--14298122	893	3.0	895	86	3	3599	26	24	24	25	2.00
14297389--14300279	716	4.0	713	84	5	3678	26	23	23	26	2.00
14300253--14300304	26	2.0	26	100	0	104	26	19	26	26	1.99
14300529--14303903	897	3.8	895	84	5	4054	25	23	24	26	2.00
14302993--14303048	26	2.2	26	96	0	103	26	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14299838--14303903	897	4.5	884	80	10	3380	25	24	24	25	2.00
14305475--14305525	26	2.0	26	88	0	75	29	15	25	29	1.96
14306361--14306414	26	2.1	26	92	0	90	27	20	24	27	1.99
14303848--14309074	886	5.9	885	84	4	6360	25	23	24	25	2.00
14308140--14308192	26	2.0	26	88	0	79	28	18	22	30	1.98
14311553--14311605	26	2.0	26	96	0	97	26	22	26	24	2.00
14312445--14312497	26	2.0	26	92	0	88	28	22	24	24	2.00
14313337--14313389	26	2.0	26	85	0	70	26	22	22	28	1.99
14309045--14316041	899	7.8	897	87	2	9069	25	23	24	26	2.00
14315125--14315177	26	2.0	26	96	0	97	28	18	26	26	1.98
14316721--14316773	26	2.0	26	96	0	97	26	22	26	24	2.00
14321384--14321436	26	2.0	26	92	0	88	28	18	24	28	1.98
14322280--14322330	26	2.0	26	100	0	102	27	19	25	27	1.99
14323964--14323992	11	2.6	11	100	0	58	20	24	31	24	1.98
14324072--14324124	26	2.0	26	96	0	97	26	18	28	26	1.98
14319800--14327671	899	8.8	897	84	4	9781	25	24	24	25	2.00
14326750--14326802	26	2.0	26	100	0	106	26	20	26	26	1.99
14330743--14330795	26	2.0	26	89	7	81	26	15	26	32	1.95
14331557--14331609	26	2.0	26	92	0	88	26	20	24	28	1.99
14332072--14332348	136	2.0	136	95	0	500	33	18	17	29	1.94
14332598--14332673	26	2.9	26	96	0	134	28	18	26	26	1.98
14334189--14334238	26	1.9	26	91	0	82	30	20	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14333471--14337827	903	4.8	900	78	8	4441	25	23	24	26	2.00
14336203--14336556	180	2.0	180	88	1	523	26	18	16	38	1.92
14340844--14340900	26	2.2	26	93	3	98	24	15	26	33	1.95
14338762--14342309	705	5.0	707	85	5	4582	25	23	24	26	2.00
14342283--14342335	26	2.0	26	92	0	88	26	18	24	30	1.98
14343906--14343978	26	2.8	26	95	0	128	31	21	21	24	1.98
14344065--14346260	718	3.1	716	88	2	3146	25	23	23	27	2.00
14345506--14347151	891	1.8	891	89	1	2589	24	23	24	26	2.00
14347131--14350551	898	3.8	919	82	8	3532	25	23	24	25	2.00
14350939--14351001	25	2.5	26	87	10	87	25	19	25	30	1.98
14352725--14352777	26	2.0	26	92	0	88	26	16	26	30	1.97
14352908--14355064	710	3.0	708	88	2	3152	26	23	23	26	2.00
14355040--14355090	26	2.0	26	96	0	93	27	19	23	29	1.98
14356831--14356883	26	2.0	26	88	0	79	30	15	26	28	1.96
14357748--14357800	26	2.0	26	92	0	88	28	22	22	26	1.99
14358652--14358704	26	2.0	26	92	0	88	28	20	22	28	1.99
14354301--14362423	902	9.1	903	84	5	9904	25	24	24	25	2.00
14359554--14359606	26	2.0	26	89	7	81	28	16	24	30	1.97
14360462--14360513	27	2.0	27	89	10	83	23	19	26	30	1.98
14362197--14362246	26	1.9	26	91	0	82	32	20	26	22	1.98
14362892--14362944	26	2.0	26	100	0	106	26	20	26	26	1.99
14363074--14364484	717	2.0	717	89	1	2159	26	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14365265--14365624	185	1.9	185	86	2	508	23	34	24	18	1.96
14366498--14366550	26	2.0	26	100	0	106	26	20	26	26	1.99
14367387--14367439	26	2.0	26	92	0	88	30	20	22	26	1.98
14365450--14370981	898	6.2	897	86	3	7261	25	24	24	25	2.00
14369177--14369226	25	2.0	25	100	0	100	28	16	28	28	1.97
14371678--14371730	26	2.0	26	92	0	88	24	22	26	26	2.00
14373412--14373464	26	2.0	26	88	0	79	28	16	24	30	1.97
14374177--14374229	26	2.0	26	92	0	88	30	20	22	26	1.98
14372848--14374325	765	1.9	765	89	1	2316	25	25	22	26	2.00
14375074--14375126	26	2.0	26	92	7	90	26	20	26	26	1.99
14375977--14376029	26	2.0	26	89	7	81	26	15	26	32	1.95
14373613--14376897	894	3.7	896	86	3	4431	26	24	23	25	2.00
14377577--14377629	26	2.0	26	89	7	81	30	20	24	24	1.99
14376927--14382186	911	5.9	889	83	6	6267	25	23	24	26	2.00
14379376--14379426	25	2.0	26	92	3	86	27	15	25	31	1.96
14380258--14380334	26	3.0	26	90	0	118	29	18	27	24	1.98
14381178--14381227	26	1.9	26	95	0	91	32	14	24	30	1.94
14382295--14382377	28	2.6	34	78	21	124	16	4	49	28	1.66
14382765--14382840	26	2.9	26	88	0	116	32	18	25	23	1.97
14382612--14383004	211	1.9	212	84	0	536	24	26	27	21	1.99
14386853--14386905	26	2.0	26	96	0	97	26	18	28	26	1.98
14387081--14387110	4	7.5	4	92	0	51	3	23	73	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14387004--14392063	702	7.1	708	84	5	6150	26	23	23	26	2.00
14392038--14392089	26	2.0	26	100	0	104	30	23	23	23	1.99
14392932--14392983	26	2.0	26	100	0	104	26	19	26	26	1.99
14391307--14395638	866	4.8	900	87	4	5770	25	24	24	25	2.00
14394593--14394627	11	3.2	11	95	0	61	14	34	20	31	1.92
14394708--14394760	26	2.0	26	92	0	88	28	22	24	24	2.00
14393863--14395641	915	2.0	888	89	3	2578	24	24	24	25	2.00
14394864--14396357	719	2.1	719	90	0	2342	26	23	24	26	2.00
14396331--14396383	26	2.0	26	96	0	97	26	20	24	28	1.99
14397214--14397266	26	2.0	26	92	0	88	28	18	24	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131