genome.fa.s2.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  76  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14152752--14152804	26	2.0	26	92	0	88	30	22	20	26	1.98
14153032--14153084	26	2.0	26	96	0	97	26	18	26	28	1.98
14155620--14155672	26	2.0	26	82	7	63	26	16	26	30	1.97
14156523--14156575	26	2.0	26	100	0	106	26	20	26	26	1.99
14155432--14160108	876	5.2	895	87	3	6002	25	24	24	25	2.00
14157427--14157479	26	2.0	26	96	0	97	26	18	26	28	1.98
14158313--14158365	26	2.0	26	96	0	97	28	13	26	32	1.93
14159189--14159238	26	1.9	26	87	0	73	30	14	24	32	1.94
14161666--14163149	707	2.1	705	89	2	2238	27	23	22	26	2.00
14163891--14163943	26	2.0	26	92	0	88	26	18	24	30	1.98
14165655--14165707	26	2.0	26	92	0	88	28	16	26	28	1.97
14167409--14167459	26	2.0	26	92	0	84	25	17	29	27	1.98
14168308--14168358	26	2.0	26	92	0	84	31	19	23	25	1.98
14166538--14171192	898	5.2	896	85	3	5794	25	24	24	25	2.00
14169204--14169256	26	2.0	26	96	0	97	28	20	24	26	1.99
14172671--14172723	26	2.0	26	88	0	79	24	16	28	30	1.97
14172827--14174627	715	2.5	708	87	3	2634	25	22	24	27	2.00
14174622--14177624	862	3.4	860	84	5	3748	25	25	23	25	2.00
14176683--14176735	26	2.0	26	96	0	97	26	20	24	28	1.99
14176838--14179029	717	3.1	706	86	6	2973	26	23	23	26	2.00
14179006--14179056	26	2.0	26	96	0	93	31	15	25	27	1.96
14179910--14179962	26	2.0	26	89	7	81	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14178266--14180978	888	3.0	887	85	4	3625	25	24	24	25	2.00
14181636--14181688	26	2.0	26	92	0	88	26	16	24	32	1.97
14183412--14183464	26	2.0	26	92	0	88	28	18	24	28	1.98
14184297--14184346	26	1.9	26	95	0	91	28	22	26	24	1.99
14180996--14185326	890	4.9	889	84	5	5437	25	23	24	26	2.00
14185582--14185634	26	2.0	26	88	0	79	28	20	22	28	1.99
14187448--14187500	26	2.0	26	92	0	88	28	18	24	28	1.98
14186742--14190116	896	3.8	888	87	4	4445	25	23	23	26	2.00
14190098--14191271	611	1.9	613	89	2	1838	27	19	23	29	1.98
14191427--14191478	26	2.0	26	96	0	95	28	19	25	26	1.98
14192317--14192395	26	3.0	26	96	0	140	27	17	25	29	1.98
14194127--14194179	26	2.0	26	85	0	70	33	18	22	24	1.97
14195027--14195079	26	2.0	26	92	0	88	26	22	24	26	2.00
14195923--14195975	26	2.0	26	85	0	70	32	16	22	28	1.96
14190713--14197748	900	7.8	893	85	4	9087	25	23	24	25	2.00
14196821--14196870	26	1.9	26	91	0	82	32	20	24	24	1.98
14199332--14199410	26	3.0	26	98	0	149	27	20	25	26	1.99
14202911--14202963	26	2.0	26	100	0	106	26	20	26	26	1.99
14204688--14204740	26	2.0	26	92	7	90	26	20	26	26	1.99
14197718--14207409	903	10.8	898	84	4	11885	25	23	24	25	2.00
14206485--14206537	26	2.0	26	92	0	88	26	16	26	30	1.97
14207482--14209846	714	3.3	715	86	2	3333	26	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14209820--14209872	26	2.0	26	92	7	90	26	16	26	30	1.97
14209985--14213583	715	5.1	713	85	5	4686	25	22	24	26	2.00
14211729--14213591	716	2.6	719	87	2	2623	25	23	24	25	2.00
14213565--14213617	26	2.0	26	100	0	106	30	20	22	26	1.98
14215424--14215477	26	2.1	26	82	3	65	25	7	14	51	1.68
14213721--14215913	700	3.1	714	87	3	3188	25	23	24	26	2.00
14215887--14215939	26	2.0	26	96	0	97	32	20	22	24	1.98
14216781--14216833	26	2.0	26	88	0	79	32	20	20	26	1.98
14215162--14218601	894	3.8	901	88	1	4987	25	23	24	25	2.00
14219291--14219343	26	2.0	26	96	0	97	30	18	24	26	1.98
14220184--14220236	26	2.0	26	96	0	97	28	20	24	26	1.99
14218560--14220304	893	2.0	895	89	2	2700	25	23	24	25	2.00
14228523--14228575	26	2.0	26	88	0	79	30	18	22	28	1.98
14226002--14229440	894	3.9	890	85	4	4493	26	24	23	25	2.00
14228688--14231587	717	4.1	712	88	2	4173	26	23	23	26	2.00
14231561--14231613	26	2.0	26	88	0	79	26	18	24	30	1.98
14231374--14231838	244	1.9	243	87	0	678	23	34	23	19	1.97
14231614--14234516	900	3.2	896	88	2	4027	25	25	24	25	2.00
14234724--14234780	26	2.2	26	83	0	69	24	5	10	59	1.51
14233769--14235796	701	2.9	699	91	1	3158	26	22	23	27	1.99
14237674--14237726	26	2.0	26	92	0	88	30	18	24	26	1.98
14238558--14238608	26	2.0	26	92	0	84	27	15	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14240358--14240412	26	2.1	27	96	3	103	30	20	27	21	1.98
14236796--14248361	903	13.0	900	81	6	12649	25	24	24	25	2.00
14242134--14242186	26	2.0	26	92	0	88	28	22	24	24	2.00
14243923--14243975	26	2.0	26	92	0	88	28	16	26	28	1.97
14244771--14244823	26	2.0	26	96	0	97	28	20	24	26	1.99
14246564--14246616	26	2.0	26	100	0	106	26	20	26	26	1.99
14244445--14248391	901	4.4	879	81	8	4235	25	24	24	25	2.00
14249923--14249975	26	2.0	26	88	0	79	26	22	28	22	1.99
14249047--14252290	895	3.6	893	85	3	4154	25	23	24	26	2.00
14251710--14251762	26	2.0	26	100	0	106	26	20	26	26	1.99
14252289--14252340	26	2.0	26	100	0	104	26	19	26	26	1.99
14253226--14254398	586	2.0	589	89	1	1811	26	21	23	28	1.99
14254531--14254581	26	2.0	26	92	0	84	29	21	21	27	1.99
14256293--14256345	26	2.0	26	96	0	97	24	20	28	26	1.99
14257601--14257653	26	2.0	26	88	0	79	30	18	22	28	1.98
14257198--14260321	897	3.5	895	88	2	4517	25	24	24	25	2.00
14261900--14261952	26	2.0	26	92	0	88	26	18	24	30	1.98
14260271--14263679	851	3.9	887	82	8	3883	25	23	24	27	2.00
14265074--14265290	58	3.8	58	90	2	330	33	12	7	46	1.71
14265074--14265288	59	3.8	56	90	4	324	33	13	7	45	1.72
14265359--14265403	17	2.8	16	80	6	54	71	2	4	22	1.15
14265392--14265452	31	2.0	30	84	12	79	75	4	3	16	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14265538--14265562	10	2.5	10	100	0	50	12	40	28	20	1.87
14265813--14265837	11	2.3	11	100	0	50	16	20	32	32	1.94
14266019--14266050	11	2.9	11	95	0	55	43	40	0	15	1.47
14266311--14266368	26	2.2	26	78	6	64	58	5	10	25	1.52
14266490--14266522	3	11.0	3	87	12	50	69	0	0	30	0.88
14266415--14266522	16	6.8	16	67	22	59	64	3	1	29	1.21
14266709--14266749	11	3.9	10	84	9	55	4	0	7	87	0.65
14266709--14266749	21	2.0	21	95	0	73	4	0	7	87	0.65
14266707--14266751	23	2.0	22	91	4	72	6	0	6	86	0.70
14266759--14267098	43	8.1	41	89	4	466	36	24	15	23	1.94
14266759--14267098	84	4.1	83	90	1	513	36	24	15	23	1.94
14268129--14268172	8	5.4	8	84	15	63	11	11	0	77	1.00
14273053--14273087	15	2.5	14	90	9	54	5	37	5	51	1.50
14276559--14276611	26	2.0	26	96	0	97	26	18	26	28	1.98
14277462--14277514	26	2.0	26	96	0	97	28	16	26	28	1.97
14275984--14278469	899	2.7	901	86	3	3359	25	24	24	25	2.00
14278361--14278413	26	2.0	26	92	0	88	26	20	26	26	1.99
14279075--14279127	26	2.0	26	92	0	88	28	18	24	28	1.98
14280229--14280257	6	4.8	6	100	0	58	68	13	0	17	1.20
14280292--14280690	58	6.7	59	84	8	508	33	12	7	46	1.70
14280292--14280688	178	2.2	174	87	7	566	33	12	7	46	1.71
14280714--14280832	4	29.0	4	69	24	54	73	2	3	21	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14280720--14280790	10	7.2	10	76	13	67	80	0	2	16	0.83
14280713--14280790	24	3.2	24	78	14	79	79	0	3	16	0.87
14280727--14280771	18	2.5	18	92	0	72	82	0	4	13	0.82
14280708--14280796	42	2.0	45	85	10	123	77	0	5	16	0.95
14280708--14280791	16	4.9	17	73	24	70	78	0	4	16	0.91
14281753--14281865	12	8.3	13	70	20	56	68	1	1	28	1.10
14281684--14281792	32	3.4	31	80	12	121	65	1	8	24	1.30
14281750--14281863	37	3.1	35	76	15	97	68	1	1	28	1.09
14281803--14281843	3	14.7	3	80	14	52	70	0	0	29	0.87
14281785--14281867	17	4.7	17	77	15	62	68	2	0	28	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131