genome.fa.s2.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  91  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16386794--16387889	182	6.1	182	74	8	437	39	8	9	42	1.68
16387913--16388247	180	1.9	179	79	4	388	39	9	8	42	1.68
16390282--16390338	17	3.4	17	70	18	55	43	0	12	43	1.41
16390629--16390748	64	1.9	64	85	3	170	46	6	11	35	1.67
16391920--16400643	542	16.0	540	74	10	4449	39	8	9	41	1.69
16394950--16395102	74	2.1	74	92	0	252	47	9	12	30	1.72
16391920--16400665	361	24.1	362	73	9	5354	39	8	10	41	1.69
16400673--16401868	181	6.6	182	79	4	1106	39	9	8	42	1.68
16400673--16401709	541	1.9	541	83	5	1337	40	9	8	41	1.68
16402205--16402596	131	3.0	131	92	0	662	41	11	8	38	1.71
16402465--16403511	182	5.8	182	76	10	773	42	10	8	38	1.68
16402469--16403457	357	2.8	355	76	9	924	43	9	7	38	1.67
16402699--16403550	181	4.7	178	76	9	475	42	9	8	39	1.68
16403642--16406053	181	13.3	180	70	13	714	40	8	10	40	1.69
16404802--16404873	36	2.0	36	94	0	126	38	2	8	50	1.47
16404623--16405055	217	2.0	217	80	8	497	38	6	11	42	1.68
16404843--16406053	361	3.4	356	78	6	1187	39	8	10	41	1.70
16404862--16406053	534	2.2	533	80	6	1241	39	8	10	41	1.70
16404840--16406066	181	6.8	181	79	5	1161	40	8	10	41	1.70
16406126--16406709	181	3.2	176	75	10	520	41	7	10	39	1.69
16406725--16408950	181	12.4	177	75	7	1471	41	9	7	40	1.67
16407638--16407685	21	2.2	20	78	10	51	39	6	2	52	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16408668--16409268	323	1.9	323	83	2	794	39	10	8	41	1.70
16408957--16409359	181	2.2	180	83	3	479	42	11	7	38	1.70
16409017--16409682	324	2.0	327	80	6	737	42	10	7	38	1.68
16409343--16411522	359	6.1	355	75	9	1481	41	9	8	39	1.69
16409343--16411522	180	12.2	180	76	7	1751	41	9	8	39	1.69
16411685--16412636	353	2.7	356	80	7	1013	42	10	7	40	1.66
16411685--16412636	361	2.7	351	79	8	983	42	10	7	40	1.66
16411648--16412665	179	5.7	176	71	11	640	42	10	7	40	1.66
16413009--16414931	180	10.7	181	76	8	1495	41	10	8	39	1.69
16413384--16413420	18	2.0	19	89	5	58	45	5	10	37	1.62
16413026--16414931	361	5.3	359	76	8	1435	41	10	8	39	1.69
16413028--16414801	540	3.3	535	79	6	1732	42	10	8	39	1.69
16414160--16414198	19	1.9	20	85	15	53	33	12	5	48	1.63
16414212--16414249	18	2.2	18	86	13	53	52	5	0	42	1.24
16415212--16415255	23	1.9	23	85	0	61	56	4	2	36	1.32
16415126--16417329	180	12.2	180	74	6	1414	41	9	8	40	1.69
16417488--16418189	181	3.9	178	78	4	545	41	9	8	40	1.68
16417477--16418284	181	4.5	181	76	3	527	42	9	8	39	1.68
16418130--16418434	159	1.9	158	80	5	355	42	10	9	37	1.72
16418292--16419997	181	9.5	179	73	10	982	42	10	7	39	1.68
16420020--16420643	174	3.5	175	75	9	511	43	9	6	39	1.65
16423984--16424008	13	1.9	13	100	0	50	64	4	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16424029--16424065	15	2.3	17	90	9	60	70	2	0	27	1.01
16440723--16440760	18	2.1	18	95	0	67	36	23	2	36	1.69
16441840--16441894	18	3.1	18	100	0	110	23	32	5	38	1.78
16442588--16442742	73	2.1	73	80	2	177	23	23	21	30	1.99
16444614--16444649	16	2.2	16	95	0	63	19	16	25	38	1.92
16449672--16449704	11	2.8	12	86	9	50	15	0	27	57	1.38
16449685--16449758	26	2.8	26	80	8	87	21	9	21	47	1.79
16449648--16449761	12	9.2	12	70	12	61	18	8	21	50	1.73
16449714--16449771	25	2.3	26	85	8	75	20	5	20	53	1.64
16449865--16449910	12	3.7	12	83	11	65	17	2	26	54	1.54
16449849--16449910	26	2.4	26	86	0	88	17	6	24	51	1.69
16449915--16449979	26	2.5	25	75	9	67	15	7	24	52	1.69
16452096--16452136	3	13.7	3	100	0	82	31	0	0	68	0.90
16452394--16452482	47	1.9	48	82	13	116	6	3	10	79	1.02
16452540--16452876	36	9.3	36	70	6	180	50	14	19	15	1.77
16452748--16453196	144	3.1	142	75	6	402	51	16	17	15	1.76
16452855--16453243	215	1.8	214	80	6	473	51	15	17	15	1.77
16452748--16453196	36	12.5	36	70	4	242	51	16	17	15	1.76
16453149--16453229	36	2.2	36	84	0	99	55	14	16	13	1.69
16453354--16453678	32	9.9	33	68	10	159	30	17	18	33	1.94
16453594--16453702	34	3.3	33	77	7	107	32	12	19	35	1.89
16453593--16453701	32	3.3	32	75	13	114	31	13	19	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16454709--16454843	30	4.6	29	70	23	88	2	20	1	75	1.01
16454731--16454843	24	4.7	24	77	16	101	0	19	1	77	0.90
16454773--16454839	35	1.9	34	85	8	91	1	20	1	76	0.95
16454731--16454860	12	10.6	12	72	10	75	1	18	2	77	0.95
16457274--16457306	17	1.9	17	93	0	57	0	15	0	84	0.61
16457288--16457339	13	4.1	13	85	9	63	0	13	7	78	0.94
16458878--16458917	21	1.9	21	89	0	62	32	0	7	60	1.25
16462934--16463026	26	3.6	26	75	16	93	22	8	21	47	1.78
16462957--16463034	26	3.0	26	75	14	88	23	10	20	46	1.81
16462921--16463058	12	10.8	12	67	14	53	21	8	21	48	1.76
16462921--16463046	52	2.5	51	77	3	155	21	8	21	48	1.77
16467222--16467252	14	2.1	15	94	5	55	58	6	3	32	1.40
16467250--16467324	33	2.2	33	86	6	98	52	26	6	14	1.67
16469547--16469721	68	2.6	66	79	10	187	24	11	10	53	1.68
16469552--16469726	66	2.6	67	81	7	205	23	11	10	54	1.67
16470866--16470896	12	2.6	12	94	0	53	3	0	25	70	1.02
16471505--16471720	68	3.2	65	73	12	193	21	10	8	58	1.58
16471897--16471925	8	3.6	8	100	0	58	13	0	10	75	1.04
16472189--16472236	24	2.0	25	83	4	62	75	6	0	18	1.01
16473920--16473950	9	3.4	9	100	0	62	12	19	22	45	1.84
16476883--16476914	1	32.0	1	100	0	64	100	0	0	0	0.00
16483616--16483675	31	1.9	32	86	3	86	36	5	16	41	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16485709--16485751	15	2.9	15	82	0	59	62	23	2	11	1.40
16485715--16485770	12	4.4	12	75	18	51	64	21	1	12	1.36
16497711--16497787	34	2.3	34	100	0	154	50	0	7	41	1.31
16498837--16498912	37	2.1	37	94	0	134	32	10	6	50	1.63
16500402--16500426	13	1.9	13	100	0	50	24	0	16	60	1.36
16504983--16505109	6	20.5	6	75	10	60	25	2	1	70	1.09
16505025--16505157	3	42.7	3	73	15	60	30	3	0	65	1.15
16505008--16505130	43	3.0	41	73	14	119	28	2	0	68	1.08
16505008--16505130	37	3.0	41	75	13	112	28	2	0	68	1.08
16505169--16505209	16	2.6	16	82	14	50	39	2	2	56	1.26
16505085--16505224	52	2.7	51	78	13	126	32	5	1	60	1.29
16505177--16505230	21	2.4	22	87	9	74	35	3	1	59	1.26
16505232--16505257	12	2.2	12	100	0	52	15	0	7	76	0.99
16505214--16505297	43	2.0	43	81	11	102	19	3	5	71	1.22
16505278--16505316	19	2.0	19	90	5	60	12	0	2	84	0.72
16505278--16505316	10	3.9	10	83	10	53	12	0	2	84	0.72
16506133--16506199	3	22.7	3	96	3	127	34	0	0	65	0.93
16506216--16506310	6	16.3	6	76	14	76	18	3	1	76	0.97
16506216--16506310	5	18.6	5	76	15	72	18	3	1	76	0.97
16506126--16506310	12	15.5	11	76	11	93	25	3	1	70	1.09
16506238--16506316	28	2.8	26	76	12	77	20	3	1	74	1.04
16506326--16506657	58	5.7	57	81	9	341	43	6	13	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16506325--16506657	118	2.9	116	80	7	370	44	6	13	36	1.68
16506326--16506648	176	1.8	174	89	5	508	44	5	13	36	1.68
16517077--16517121	18	2.6	18	89	10	76	75	0	15	8	1.03
16517078--16517120	16	2.6	16	92	7	68	79	0	16	4	0.90
16518117--16518260	43	3.2	45	84	8	159	26	13	13	45	1.81
16518117--16518294	46	3.9	46	84	7	193	25	15	16	42	1.87
16518129--16518294	48	3.6	48	84	7	193	25	15	17	41	1.89
16518308--16518346	8	4.8	8	93	3	51	87	5	2	5	0.75
16518350--16518501	43	3.5	43	89	1	223	20	15	23	41	1.89
16518675--16518724	11	4.2	11	80	14	55	20	2	2	76	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131