Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  45  of  131  ( 15626 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9436364--9436405
11
3.7
11
87
6
66
83
0
11
4
0.79
9436349--9436405
23
2.4
24
88
8
82
78
0
14
7
0.94
9436378--9436414
19
2.1
17
90
10
56
83
0
10
5
0.79
9436414--9436477
3
21.7
3
93
3
112
65
1
0
32
1.02
9436476--9436513
3
12.7
3
100
0
76
34
0
0
65
0.93
9436670--9436991
44
7.2
43
82
7
342
40
15
13
30
1.86
9436901--9437109
50
4.1
50
83
6
231
39
19
11
28
1.87
9437918--9437956
10
3.7
10
89
6
51
2
5
5
87
0.75
9443418--9443466
25
1.9
26
84
12
66
46
18
4
30
1.67
9443559--9443585
10
2.7
10
100
0
54
44
11
7
37
1.68
9443643--9443717
20
3.4
20
68
28
62
42
16
6
34
1.74
9443569--9443727
47
3.4
47
95
0
264
42
14
5
37
1.69
9451277--9451315
17
2.4
16
82
4
51
17
2
2
76
1.01
9452771--9452799
13
2.1
14
93
6
51
75
0
24
0
0.80
9452846--9453224
79
4.7
78
73
10
259
43
8
7
40
1.63
9452874--9453217
158
2.1
161
80
5
385
42
9
7
40
1.65
9459068--9459117
14
3.4
14
81
10
64
50
16
0
34
1.45
9459069--9459119
8
6.6
8
86
8
70
50
13
0
35
1.42
9459068--9459120
22
2.4
22
90
0
79
49
15
0
35
1.45
9464162--9464212
15
3.4
15
74
15
52
39
0
1
58
1.09
9464307--9464388
42
2.0
42
90
0
128
46
8
4
40
1.56
9465412--9465455
20
2.2
20
91
0
70
38
2
13
45
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9465499--9465945
99
4.7
92
73
15
319
52
3
4
39
1.39
9465652--9465696
23
1.9
24
81
4
56
64
6
2
26
1.30
9465499--9465837
93
3.6
90
76
13
280
53
3
3
39
1.38
9466340--9466373
2
17.0
2
100
0
68
50
0
50
0
1.00
9471411--9471451
21
2.0
21
85
4
57
26
2
2
68
1.15
9474729--9474767
3
13.0
3
100
0
78
66
0
0
33
0.92
9475015--9475063
24
2.0
25
84
11
66
38
0
16
44
1.48
9475154--9475233
26
3.1
26
79
0
79
25
25
22
27
2.00
9475306--9475402
32
3.0
32
72
14
90
16
9
3
71
1.25
9487661--9487838
54
3.2
54
68
20
139
25
22
15
37
1.93
9487705--9487884
60
3.1
60
66
16
153
25
26
13
35
1.93
9487547--9487982
228
1.9
230
82
4
558
24
25
14
36
1.93
9487536--9488016
114
4.2
114
83
3
502
24
26
14
35
1.94
9488358--9488392
12
2.9
12
91
0
52
28
2
5
62
1.32
9488362--9488397
3
12.0
3
87
0
54
30
2
2
63
1.22
9488436--9488515
3
27.7
3
75
7
58
28
3
0
67
1.08
9488475--9488518
14
3.1
14
84
12
54
18
0
0
81
0.68
9488477--9488518
11
3.7
11
87
6
57
16
0
0
83
0.65
9488475--9488512
20
1.9
20
94
0
67
18
0
0
81
0.69
9488958--9488983
10
2.6
10
100
0
52
7
0
15
76
0.99
9494152--9494380
44
5.3
42
75
8
160
33
11
14
40
1.83
9494682--9494757
6
12.3
6
75
10
73
19
1
2
76
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9495641--9495757
7
15.7
7
73
21
78
17
0
5
76
1.01
9495809--9495883
26
2.9
26
87
0
105
28
6
10
54
1.60
9501310--9501466
52
3.0
52
88
3
210
25
26
8
38
1.85
9501491--9501521
11
2.8
11
95
0
53
51
32
0
16
1.44
9501852--9501888
2
18.5
2
100
0
74
48
0
0
51
1.00
9502661--9502797
69
2.0
69
92
0
229
40
13
9
36
1.78
9503925--9503997
18
4.1
18
75
5
60
82
8
6
2
0.94
9505672--9505720
18
2.7
18
78
12
55
24
24
12
38
1.90
9507569--9507760
106
1.8
104
81
2
240
31
15
16
36
1.90
9507854--9507902
22
2.2
22
88
0
71
34
14
14
36
1.86
9507890--9507985
22
4.3
23
89
4
137
33
23
12
30
1.92
9507982--9508241
37
7.1
37
71
11
124
16
19
14
49
1.79
9508178--9508260
36
2.3
36
80
2
94
16
22
14
45
1.84
9508915--9509304
127
3.1
126
84
2
512
32
41
9
16
1.81
9509900--9509947
8
5.9
8
79
13
53
25
0
2
72
0.95
9509900--9509934
17
2.1
16
89
5
52
25
0
0
74
0.82
9509897--9509946
25
2.0
25
88
7
75
28
0
2
70
0.99
9510089--9510132
12
3.6
12
81
3
52
70
0
0
29
0.88
9510410--9510517
14
7.4
14
70
15
76
50
35
0
12
1.47
9510395--9510552
58
2.7
57
87
3
208
49
34
0
15
1.50
9510395--9510552
30
5.4
29
82
7
178
49
34
0
15
1.50
9510417--9510567
28
5.2
28
78
12
103
49
31
1
17
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9510577--9510659
29
2.8
29
83
5
87
49
25
0
25
1.51
9512054--9512327
116
2.4
116
82
5
315
35
13
7
44
1.71
9512051--9512356
57
5.3
57
80
9
313
35
11
7
45
1.69
9512362--9512404
12
3.8
12
81
12
63
81
0
0
18
0.69
9512364--9512401
11
3.5
11
86
13
60
84
0
0
15
0.63
9512364--9512401
5
6.8
6
88
11
55
84
0
0
15
0.63
9512362--9512404
17
2.5
17
85
14
70
81
0
0
18
0.69
9512430--9512477
3
15.7
3
91
4
69
70
0
2
27
0.98
9513245--9513344
16
6.5
15
72
11
69
65
2
1
32
1.11
9513257--9513328
29
2.4
30
80
13
78
62
1
1
34
1.13
9513209--9513340
47
2.8
48
78
10
132
65
1
1
31
1.11
9513537--9513884
45
7.9
42
76
13
299
43
19
13
23
1.86
9513549--9513885
88
3.8
88
87
4
439
43
18
13
24
1.87
9513549--9513885
175
1.9
176
84
6
448
43
18
13
24
1.87
9514142--9514195
21
2.6
21
93
0
99
42
18
12
25
1.86
9514891--9514929
18
2.2
18
85
0
51
2
20
0
76
0.90
9516565--9517013
58
7.7
57
85
4
556
34
12
6
45
1.69
9516565--9517029
117
4.0
116
87
3
646
34
12
6
46
1.68
9516565--9517028
175
2.6
174
88
3
678
34
12
6
46
1.68
9517001--9517030
15
1.9
16
93
6
53
26
3
3
66
1.23
9519154--9519224
21
3.5
20
75
11
72
73
4
2
19
1.13
9519154--9519206
27
2.0
26
85
3
70
73
1
3
20
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9519149--9519190
12
3.4
13
80
9
52
78
2
0
19
0.86
9519570--9519608
15
2.6
14
84
11
51
2
2
5
89
0.63
9519568--9519608
12
3.4
12
89
0
64
2
2
4
90
0.61
9519612--9520039
41
10.4
41
89
1
642
36
22
16
24
1.94
9519612--9520039
206
2.1
205
91
1
687
36
22
16
24
1.94
9520365--9520446
43
1.9
42
85
7
112
34
17
12
36
1.87
9521766--9521811
21
2.2
21
84
7
58
2
15
2
80
0.91
9521777--9521829
8
6.5
8
77
12
54
0
15
0
84
0.61
9526151--9526658
233
2.2
232
90
3
790
35
12
6
46
1.66
9526153--9526641
117
4.2
116
91
2
786
35
12
5
45
1.66
9526153--9526658
58
8.7
57
80
8
563
35
12
5
46
1.65
9528799--9528868
21
3.4
21
76
18
58
71
4
4
20
1.20
9528794--9528852
27
2.3
27
80
11
70
72
1
6
18
1.15
9535043--9535077
15
2.3
15
85
0
52
48
0
22
28
1.51
9538347--9538557
57
3.7
57
81
5
203
36
12
6
45
1.67
9538396--9538557
58
2.8
58
85
2
229
38
10
5
45
1.62
9538908--9538957
20
2.5
20
87
9
66
0
44
0
56
0.99
9539394--9539436
3
14.3
3
100
0
86
67
0
0
32
0.91
9539429--9539520
20
4.9
20
73
17
65
63
0
2
34
1.07
9539455--9539514
16
3.7
16
69
20
52
61
0
1
36
1.06
9546326--9546366
16
2.6
16
82
17
50
56
2
0
41
1.13
9546365--9546407
20
2.0
20
86
8
59
79
6
11
2
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9546443--9546502
32
1.9
32
86
3
86
26
55
8
10
1.61
9548075--9548194
7
17.1
7
70
9
75
50
31
0
17
1.46
9548087--9548202
14
8.5
13
77
11
117
52
31
0
15
1.43
9548089--9548200
28
4.1
27
83
10
129
54
30
0
15
1.41
9548301--9548330
13
2.2
14
94
5
53
50
40
0
10
1.36
9548364--9548419
15
3.8
15
72
11
53
55
21
0
23
1.44
9548340--9548427
38
2.3
38
80
5
97
52
23
1
22
1.54
9550229--9550262
17
2.0
17
88
0
50
79
2
8
8
1.03
9556248--9556294
22
2.1
22
84
0
58
27
14
19
38
1.91
9556592--9557088
37
13.6
35
71
10
210
20
18
13
47
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131