genome.fa.s2.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  2  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123132--133011	357	27.7	358	72	10	5020	40	8	9	41	1.69
128325--128357	17	2.0	17	88	5	50	48	0	12	39	1.40
126794--132991	180	34.8	179	73	9	3163	39	8	10	41	1.70
127396--128814	545	2.6	536	78	6	1280	40	8	9	41	1.68
128466--131861	710	4.8	712	74	11	1688	40	8	9	40	1.69
129259--129759	176	2.8	178	77	6	442	39	7	10	42	1.69
129902--130543	169	3.7	169	77	7	437	42	9	8	40	1.66
129782--132991	710	4.5	704	74	10	1676	40	8	10	40	1.69
129762--133010	359	9.1	359	73	10	1572	40	8	9	40	1.69
137736--138301	281	2.0	282	93	0	972	37	15	13	33	1.88
142120--142266	62	2.4	62	80	4	145	35	13	10	40	1.79
141942--142223	146	1.9	145	89	0	438	35	15	8	40	1.78
142143--142280	62	2.3	60	82	7	165	34	13	9	42	1.76
143205--143455	79	3.1	80	82	1	324	21	8	26	43	1.81
143438--143663	62	3.5	62	80	14	256	20	11	28	39	1.87
143499--143657	74	2.1	74	98	0	309	20	10	29	38	1.87
148093--148584	181	2.7	180	79	6	512	41	8	11	38	1.71
148652--149056	181	2.2	181	82	3	451	40	9	8	41	1.68
149060--151208	181	11.9	177	74	8	1281	41	8	9	41	1.66
149122--151661	361	7.1	357	74	9	1311	40	8	9	41	1.66
149087--151686	181	14.5	181	73	8	1253	40	7	9	42	1.66
149353--150770	539	2.6	537	79	5	1347	41	7	8	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151073--151376	168	1.8	164	83	8	400	40	5	10	43	1.62
152786--152829	20	2.2	20	84	4	54	36	4	2	56	1.32
152725--156098	180	18.7	179	71	11	1485	39	8	9	41	1.69
154406--154454	25	1.9	26	91	4	82	32	0	6	61	1.21
154266--154635	206	1.8	205	82	6	480	41	7	8	42	1.63
154434--156105	537	3.1	531	78	8	1516	40	8	9	41	1.68
154441--184513	719	42.2	708	71	13	4387	40	8	9	41	1.68
156169--158979	181	15.6	181	76	7	2103	40	8	9	41	1.69
159096--159425	164	2.0	163	80	4	369	41	8	10	39	1.70
158977--159605	343	1.8	341	81	4	784	40	8	10	41	1.69
159260--170770	181	64.2	179	71	12	5204	40	8	9	41	1.68
159327--184513	360	70.5	357	69	13	4951	40	8	9	41	1.68
159561--163523	698	5.6	697	79	8	2819	40	8	9	41	1.67
162545--162586	20	2.2	20	82	4	50	40	2	2	54	1.26
161860--168066	361	17.4	357	73	10	2765	40	8	9	41	1.68
163197--163229	17	2.0	17	88	5	50	48	0	12	39	1.40
159029--168145	538	17.1	528	72	12	3421	40	8	9	41	1.68
167474--167505	17	1.9	16	93	6	55	53	0	3	43	1.16
160984--184513	536	43.6	539	70	12	8176	40	8	9	41	1.68
168033--168263	123	1.8	127	81	10	292	37	7	7	47	1.59
172157--172189	18	1.9	17	88	11	50	48	6	6	39	1.53
171248--173522	180	12.7	180	77	6	1569	40	8	8	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173048--174004	496	1.9	498	83	7	1226	40	8	8	42	1.66
174144--175601	725	2.0	724	81	5	1710	39	7	10	42	1.68
173603--183862	181	57.1	182	71	11	2636	40	8	9	41	1.68
175730--176040	165	1.9	163	80	4	356	39	7	7	45	1.61
176047--176510	177	2.6	179	82	4	488	42	7	9	40	1.65
176491--176959	180	2.6	176	77	10	407	42	9	8	39	1.68
174897--184513	360	26.9	358	73	9	5128	40	8	9	41	1.68
176047--184513	181	47.4	178	71	10	2983	40	8	9	41	1.68
179010--179320	153	2.0	155	80	6	355	42	6	8	42	1.60
183656--183696	15	2.9	15	85	10	59	17	2	7	73	1.17
184066--184104	20	2.0	20	90	10	62	51	2	7	38	1.44
184066--184105	21	2.0	21	90	5	64	52	2	7	37	1.43
183943--184513	177	3.2	178	77	9	492	40	7	8	43	1.64
184964--185285	59	5.6	59	84	5	374	36	14	7	40	1.75
185311--185399	5	16.8	5	79	17	76	77	2	4	15	1.03
185311--185399	6	14.5	6	76	12	74	77	2	4	15	1.03
185310--185399	17	5.6	16	76	22	75	76	2	5	15	1.07
185843--185886	23	1.9	23	90	0	70	72	0	4	22	1.02
185842--185892	23	2.2	23	82	0	66	74	0	3	21	0.98
185848--185922	6	12.0	6	72	12	53	72	0	2	25	0.98
186082--186131	1	50.0	1	79	0	55	0	2	8	90	0.54
186090--186132	19	2.3	19	92	4	70	0	2	9	88	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186082--186131	23	2.2	23	92	7	84	0	2	8	90	0.54
186082--186138	18	3.1	17	80	11	60	0	3	10	85	0.70
186081--186138	23	2.5	23	86	10	75	0	5	10	84	0.77
186153--186618	42	11.1	41	84	7	438	37	21	16	25	1.93
186153--186618	83	5.6	82	85	7	442	37	21	16	25	1.93
187134--187192	22	2.7	21	86	5	73	33	20	8	37	1.83
188437--188479	9	4.8	9	83	11	61	9	11	0	79	0.95
188437--188519	20	4.3	19	76	18	73	6	15	0	78	0.94
188435--188508	8	9.1	8	77	7	53	5	16	0	78	0.93
188454--188510	10	5.5	10	87	6	69	3	14	0	82	0.80
188446--188519	11	7.2	11	86	10	72	5	16	0	78	0.93
192423--192576	58	2.7	58	90	4	240	35	14	7	43	1.73
192594--192682	5	16.8	5	77	19	76	77	0	5	16	0.95
192594--192682	17	5.2	17	77	14	87	77	0	5	16	0.95
192594--192682	6	14.5	6	74	16	76	77	0	5	16	0.95
192596--192744	55	2.7	55	74	10	135	72	2	4	20	1.15
193070--193108	20	1.9	20	89	5	60	69	5	5	20	1.28
193091--193125	16	2.1	17	94	5	63	71	0	5	22	1.07
193080--193123	20	2.3	19	84	11	54	75	0	4	20	0.98
193041--193125	37	2.3	38	77	6	93	68	3	4	23	1.25
193105--193147	22	1.9	23	86	13	63	69	0	4	25	1.07
193296--196070	180	15.5	180	74	8	1823	39	9	9	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193710--194181	178	2.6	179	77	6	434	41	9	8	40	1.67
193312--196062	356	7.7	352	73	9	1488	39	9	9	41	1.69
196190--203218	181	38.6	181	71	9	3164	40	8	9	41	1.68
198477--198515	20	2.0	20	85	9	55	38	5	2	53	1.37
196367--200245	535	7.2	532	75	7	1902	40	8	9	41	1.68
201160--201196	19	1.9	19	88	0	56	35	10	13	40	1.80
201261--201396	65	2.1	66	90	5	213	42	6	11	38	1.68
203267--208810	181	30.7	178	70	13	701	41	9	8	41	1.67
203308--203926	180	3.4	181	76	7	480	42	9	7	40	1.66
204031--208917	181	27.3	178	73	10	2437	40	9	8	41	1.68
204035--208917	361	13.6	361	74	9	3050	40	9	8	41	1.68
204034--208917	718	6.8	711	74	10	3409	40	9	8	41	1.68
204092--208858	537	8.9	531	73	11	1801	41	9	8	40	1.68
208832--209019	102	1.8	102	83	6	247	33	11	10	44	1.76
208684--209199	282	1.8	282	80	6	634	39	10	8	41	1.69
215047--215101	18	3.1	18	86	0	83	25	1	23	49	1.60
215047--215097	9	5.7	9	80	0	57	25	1	23	49	1.61
215158--215209	26	2.0	26	92	0	86	25	9	25	40	1.85
219170--219204	3	11.7	3	87	0	52	60	0	0	40	0.97
219167--219206	12	3.3	12	85	0	62	55	0	0	45	0.99
220123--220151	14	2.1	14	100	0	58	31	20	27	20	1.98
220676--220710	3	11.7	3	100	0	70	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220856--220898	11	3.9	11	85	8	61	60	0	0	39	0.97
221046--221298	28	8.8	28	77	8	188	47	32	3	16	1.63
221016--221147	14	9.3	14	70	9	88	50	28	1	19	1.56
221046--221147	44	2.4	44	85	4	138	51	29	1	16	1.55
222796--225182	182	13.3	180	75	8	1658	39	8	9	41	1.69
223328--223366	20	2.0	20	85	9	55	38	5	2	53	1.37
223684--225108	181	7.9	181	73	11	448	41	8	9	40	1.68
222983--225110	542	3.9	537	76	9	1457	39	9	9	41	1.70
222964--225182	357	6.2	357	74	9	1451	39	9	9	41	1.69
225077--225289	104	2.0	104	80	11	238	35	7	7	48	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131