genome.fa.s2.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  124  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22520317--22520360	20	2.2	20	92	4	72	70	2	0	27	0.99
22521414--22521652	118	2.0	119	95	0	426	42	2	5	48	1.42
22522714--22522738	12	2.1	12	100	0	50	56	0	8	36	1.29
22523824--22523862	13	2.9	13	81	7	51	61	0	0	38	0.96
22526981--22527009	10	2.7	11	94	5	51	65	0	0	34	0.93
22526988--22527031	15	2.9	15	82	3	52	61	0	0	38	0.96
22528017--22528067	25	2.1	24	85	3	66	49	0	0	50	1.00
22528118--22528167	23	2.1	24	85	3	66	36	4	0	60	1.16
22528795--22528851	26	2.2	25	81	6	69	40	12	0	47	1.41
22533638--22533681	23	2.0	23	81	4	54	52	4	2	40	1.34
22536650--22536706	24	2.4	24	76	5	62	49	19	3	28	1.65
22537412--22537459	12	3.9	12	84	13	62	60	0	0	39	0.97
22537410--22537457	24	2.0	25	91	4	80	60	0	0	39	0.97
22537409--22537468	25	2.5	24	83	8	77	61	0	0	38	0.96
22542893--22542926	18	1.9	18	88	5	52	14	8	0	76	1.01
22544082--22544149	26	2.6	27	75	11	68	64	2	2	29	1.22
22544587--22544639	23	2.4	21	93	6	88	52	0	0	47	1.00
22544629--22544681	27	2.0	27	85	7	72	66	1	0	32	1.03
22550238--22550351	59	1.9	59	83	0	147	48	2	4	44	1.36
22550379--22550412	2	17.0	2	100	0	68	50	0	0	50	1.00
22551427--22551465	11	3.5	11	83	13	53	30	2	0	66	1.05
22551982--22552033	20	2.7	19	77	11	52	46	3	0	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22554884--22554908	8	3.1	8	100	0	50	76	0	0	24	0.80
22555058--22555108	11	4.7	11	73	4	50	49	0	0	50	1.00
22556635--22556676	22	2.0	21	90	4	66	50	0	11	38	1.40
22558096--22558142	22	2.1	22	88	0	67	40	0	2	57	1.11
22560638--22560678	19	2.2	19	95	0	73	24	12	14	48	1.78
22560772--22560806	2	18.0	2	88	5	54	51	0	0	48	1.00
22566144--22566201	18	3.1	18	80	5	62	39	8	10	41	1.70
22566144--22566185	20	2.1	20	86	0	57	42	9	7	40	1.65
22566368--22566421	22	2.5	22	76	5	58	51	0	1	46	1.11
22568061--22568097	2	19.0	2	88	5	58	48	0	0	51	1.00
22569062--22569105	20	2.2	20	91	0	70	56	0	29	13	1.38
22570088--22570156	30	2.2	30	82	10	77	52	10	2	34	1.50
22571603--22571738	69	2.0	69	94	0	236	33	13	29	23	1.94
22572778--22572824	22	2.1	22	84	7	60	38	2	2	57	1.23
22572811--22572852	15	2.6	16	81	11	50	30	0	4	64	1.14
22574300--22574334	7	5.0	7	100	0	70	42	0	28	28	1.56
22578611--22578636	2	13.0	2	100	0	52	50	0	0	50	1.00
22588413--22588485	24	3.1	24	73	15	80	46	26	9	17	1.79
22589728--22589784	29	2.1	27	79	17	73	28	3	1	66	1.18
22592099--22592167	22	3.0	23	73	14	63	37	2	4	55	1.35
22592294--22592333	19	2.2	19	86	4	55	32	5	0	62	1.17
22592751--22592805	26	2.3	23	81	9	65	58	1	3	36	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22592857--22592920	23	2.7	24	83	7	69	62	3	3	31	1.26
22592886--22592930	24	1.9	23	86	4	63	60	2	2	35	1.22
22593551--22593581	16	1.9	16	93	0	53	67	0	0	32	0.91
22596109--22596145	6	6.5	6	81	12	51	48	0	0	51	1.00
22596107--22596145	11	3.5	11	82	0	51	46	0	0	53	1.00
22596110--22596141	16	1.9	16	93	6	55	43	0	0	56	0.99
22601162--22601461	148	2.0	147	94	1	521	46	19	15	19	1.85
22608631--22609016	186	2.1	186	88	1	574	34	7	16	41	1.76
22610742--22610778	16	2.2	18	85	9	51	51	5	0	43	1.24
22610767--22610819	25	2.1	25	89	0	79	56	1	0	41	1.10
22617811--22617859	19	2.5	20	69	18	50	40	0	0	59	0.98
22617740--22617837	40	2.4	42	80	14	116	52	1	0	46	1.07
22618405--22618430	13	2.0	13	100	0	52	76	0	0	23	0.78
22618525--22618577	27	2.0	27	81	7	63	54	5	0	39	1.24
22624121--22624154	3	11.3	3	100	0	68	67	0	0	32	0.91
22624745--22624787	11	3.7	11	84	9	50	62	0	4	32	1.15
22624745--22624806	24	2.6	24	76	5	63	61	1	6	30	1.31
22625520--22625560	10	4.0	10	83	3	55	51	0	0	48	1.00
22625539--22625573	12	2.9	12	91	8	54	62	0	0	37	0.95
22626408--22626568	80	2.0	80	89	4	245	26	3	19	49	1.65
22642273--22642335	20	3.0	21	81	6	74	47	0	0	52	1.00
22642348--22642389	21	2.0	21	90	9	68	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22642427--22642496	28	2.5	28	80	2	77	55	0	0	44	0.99
22642434--22642481	23	2.1	23	84	7	62	50	0	0	50	1.00
22643394--22643450	29	1.9	29	82	10	71	36	0	0	63	0.95
22643989--22644030	19	2.2	19	86	0	57	40	0	0	59	0.97
22646841--22646886	16	2.8	17	83	9	60	32	4	4	58	1.37
22648805--22648890	43	2.0	43	97	0	163	43	4	29	23	1.74
22648996--22649184	63	3.0	63	98	0	362	23	8	29	37	1.86
22663193--22663245	27	2.0	27	81	7	63	35	0	3	60	1.15
22663619--22663643	13	1.9	13	100	0	50	48	12	0	40	1.40
22670237--22670318	40	2.0	41	83	6	105	45	7	15	31	1.74
22671450--22671533	23	3.5	23	82	9	105	57	2	0	40	1.12
22671475--22671536	26	2.3	27	88	2	90	59	1	0	38	1.07
22671500--22671559	23	2.7	24	82	10	65	60	6	0	33	1.23
22671517--22671583	20	3.2	21	78	6	73	62	7	0	29	1.22
22671651--22671740	32	2.9	29	78	16	90	54	2	2	41	1.25
22671651--22671740	31	2.8	32	76	17	89	54	2	2	41	1.25
22672539--22672579	18	2.2	19	86	4	57	48	0	0	51	1.00
22675272--22675309	15	2.4	16	83	16	53	52	0	0	47	1.00
22675263--22675307	14	3.3	14	82	14	58	55	0	0	44	0.99
22675263--22675321	27	2.2	28	82	11	70	54	0	0	45	0.99
22679967--22680021	22	2.4	23	76	17	60	43	1	7	47	1.41
22679840--22680119	137	2.0	140	95	2	512	48	3	4	43	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22680011--22680077	21	3.4	20	72	16	59	49	2	1	46	1.26
22680025--22680065	17	2.6	16	88	7	57	51	2	2	43	1.28
22679878--22680153	137	2.0	136	89	2	421	51	2	3	42	1.34
22680174--22680212	19	2.1	19	85	9	53	48	0	2	48	1.15
22680776--22683312	328	7.8	326	80	5	2414	35	13	15	35	1.86
22683597--22683639	19	2.2	20	80	8	54	55	0	2	41	1.12
22686079--22686124	22	2.1	22	84	8	58	56	2	4	36	1.31
22686094--22686136	14	3.1	14	87	9	61	51	0	0	48	1.00
22686085--22686131	21	2.2	22	88	11	71	55	0	2	42	1.12
22689299--22689346	25	2.1	22	85	14	62	75	4	0	20	0.97
22689311--22689356	18	2.6	17	86	6	65	76	6	0	17	1.00
22696165--22696204	15	2.7	15	88	0	53	17	0	2	80	0.83
22696175--22696226	21	2.5	21	81	6	61	30	0	1	67	1.02
22696408--22696447	16	2.3	18	80	20	50	30	0	0	70	0.88
22696526--22696563	17	2.2	18	85	4	51	47	2	0	50	1.15
22698410--22698441	2	16.5	2	93	6	57	50	0	0	50	1.00
22702369--22702448	40	2.0	40	97	0	151	41	7	33	17	1.78
22709582--22709608	2	13.5	2	100	0	54	0	51	0	48	1.00
22713192--22713216	12	2.1	12	100	0	50	32	0	36	32	1.58
22726854--22726945	44	2.1	44	91	0	148	38	8	17	35	1.81
22727617--22727702	30	2.9	29	75	13	84	44	2	10	43	1.51
22731335--22731392	31	1.9	30	82	10	73	50	1	17	31	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22731485--22731536	16	3.4	15	80	20	63	34	3	15	46	1.64
22731730--22731771	19	2.2	19	83	12	50	64	0	2	33	1.07
22735705--22735758	25	2.2	25	83	9	67	25	3	24	46	1.69
22742478--22742584	11	9.7	11	67	11	58	43	2	2	50	1.31
22742475--22742574	22	4.5	22	82	5	112	46	3	2	49	1.28
22742478--22742611	33	4.2	33	69	8	98	44	3	2	50	1.32
22742443--22742574	66	2.0	66	80	2	149	43	3	5	46	1.44
22742553--22742611	29	2.0	30	83	3	75	47	3	1	47	1.29
22742604--22742688	22	3.9	21	75	13	73	35	8	2	54	1.43
22742725--22742868	43	3.3	44	82	4	150	38	6	4	50	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131