genome.fa.s2.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  127  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23140102--23140184	8	10.2	8	73	17	55	57	0	1	40	1.06
23140113--23140182	30	2.3	30	95	0	131	60	0	1	38	1.06
23140130--23140170	21	1.9	22	90	5	66	58	0	2	39	1.11
23151461--23151485	3	8.3	3	100	0	50	0	32	0	68	0.90
23153039--23153078	21	1.9	21	84	0	53	62	2	2	32	1.22
23154777--23154804	2	14.0	2	100	0	56	50	0	0	50	1.00
23158924--23158957	2	17.0	2	100	0	68	50	0	0	50	1.00
23161888--23161922	18	2.0	17	88	5	52	31	11	37	20	1.88
23166414--23166476	34	1.9	33	90	9	103	47	12	14	25	1.79
23171950--23172002	13	3.7	13	75	22	52	49	5	1	43	1.37
23172640--23172677	16	2.3	17	86	13	53	65	2	0	31	1.06
23182983--23183060	29	2.8	29	71	7	72	65	0	1	33	1.01
23183052--23183130	29	2.8	28	79	11	81	51	1	1	45	1.17
23183105--23183168	31	2.1	31	85	5	85	56	0	1	42	1.09
23183077--23183152	23	3.4	23	76	7	68	53	1	1	43	1.17
23192099--23192157	21	2.8	22	85	10	79	57	18	0	23	1.40
23192099--23192157	20	2.8	21	82	12	84	57	18	0	23	1.40
23193318--23193512	98	2.0	98	89	0	300	26	10	20	42	1.85
23202309--23202435	31	4.0	32	70	19	88	46	0	0	52	1.06
23210956--23211005	26	1.9	26	100	0	100	48	0	8	44	1.32
23218209--23218233	12	2.1	12	100	0	50	32	0	16	52	1.44
23218941--23218989	19	2.5	20	83	9	75	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23221373--23221457	42	2.0	42	97	0	161	34	12	17	35	1.88
23224987--23225013	14	1.9	14	100	0	54	48	0	0	51	1.00
23245239--23245289	26	1.9	27	88	4	77	49	0	1	49	1.12
23245257--23245292	18	2.1	17	89	5	54	50	0	2	47	1.15
23245883--23245938	27	2.1	27	83	6	69	50	0	3	46	1.19
23246607--23246650	23	2.0	22	82	13	54	52	0	0	47	1.00
23257544--23257822	138	2.0	138	98	0	540	22	21	15	40	1.90
23259959--23259998	20	2.0	20	90	5	62	50	2	0	47	1.14
23270304--23270340	3	12.3	3	100	0	74	67	0	0	32	0.91
23280460--23280509	22	2.4	21	93	6	84	38	0	4	58	1.17
23282209--23282241	7	4.7	7	92	0	57	45	3	0	51	1.16
23285400--23285426	13	2.1	13	100	0	54	62	0	0	37	0.95
23285504--23285538	18	1.9	18	88	0	52	74	0	0	25	0.82
23285816--23285913	30	3.3	30	81	8	130	47	34	2	15	1.57
23285832--23285950	14	8.3	14	71	15	91	49	31	3	15	1.60
23285863--23286057	36	5.4	36	69	22	101	49	32	2	15	1.59
23285816--23285956	28	4.9	29	81	8	96	48	32	2	15	1.60
23285998--23286037	21	1.9	21	84	0	53	52	37	0	10	1.35
23286009--23286073	22	2.9	21	81	6	76	53	27	0	18	1.44
23288427--23288460	17	1.9	18	94	5	61	5	5	8	79	1.05
23288913--23288952	20	2.0	20	85	4	55	17	2	17	62	1.44
23289035--23289060	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23290484--23290525	21	2.0	21	90	0	66	50	2	2	45	1.27
23291147--23291207	15	3.9	15	78	8	52	60	1	3	34	1.23
23291329--23291389	29	2.1	28	87	6	86	65	1	0	32	1.02
23297124--23297148	5	5.0	5	100	0	50	40	0	0	60	0.97
23298218--23298251	15	2.4	14	90	5	50	29	0	5	64	1.17
23298213--23298274	25	2.5	25	82	10	74	27	0	6	66	1.16
23298369--23298397	15	2.0	15	93	6	51	58	0	0	41	0.98
23306153--23306488	120	2.8	118	86	5	449	34	11	6	47	1.66
23306143--23306517	60	6.3	59	79	9	393	34	10	5	49	1.62
23306562--23306613	3	17.3	3	87	0	77	61	1	1	34	1.18
23307702--23307902	44	4.5	44	81	1	215	45	19	10	23	1.82
23308061--23308103	11	3.9	11	84	0	59	20	0	27	51	1.48
23308060--23308103	22	2.0	22	90	0	70	22	0	27	50	1.50
23308140--23308284	52	2.8	51	84	10	186	42	7	21	28	1.80
23309236--23309370	52	2.6	51	82	3	164	49	8	16	25	1.73
23309911--23310046	25	5.5	24	81	6	123	38	8	32	20	1.82
23309911--23310043	24	5.5	24	82	11	139	39	8	32	19	1.81
23309911--23310052	49	2.9	49	80	11	164	39	7	31	21	1.81
23310358--23310460	52	2.0	52	83	7	129	42	9	19	28	1.82
23311203--23311257	28	2.0	28	85	7	76	40	20	5	34	1.75
23311232--23311272	21	2.0	21	85	9	57	36	14	7	41	1.74
23312190--23312223	15	2.2	16	94	5	61	52	11	8	26	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23312411--23312466	15	3.7	15	80	7	60	8	16	0	75	1.05
23318744--23318775	13	2.3	15	89	10	50	31	0	3	65	1.08
23318763--23319138	59	6.3	60	81	7	385	39	9	5	45	1.60
23319179--23319226	3	16.0	3	86	0	69	60	2	2	35	1.20
23320800--23320864	9	7.5	8	77	16	67	73	0	13	12	1.09
23320800--23320875	17	4.4	17	80	6	89	73	0	13	13	1.09
23320807--23320893	36	2.4	36	90	0	138	75	0	11	12	1.04
23320800--23320891	27	3.5	26	73	10	78	75	0	11	13	1.06
23322238--23322449	108	2.0	106	82	5	257	39	11	15	33	1.83
23322674--23322735	17	3.6	17	80	2	70	38	16	9	35	1.81
23322799--23322865	23	3.0	23	76	8	75	32	8	14	43	1.77
23325775--23325803	2	14.5	2	100	0	58	51	0	0	48	1.00
23325881--23325949	29	2.3	29	78	14	77	49	1	5	43	1.35
23325890--23325957	29	2.4	28	82	7	75	47	1	5	45	1.36
23328911--23328938	2	14.0	2	100	0	56	50	0	0	50	1.00
23337371--23337453	27	3.1	27	100	0	166	30	7	30	32	1.84
23338145--23338179	16	2.2	16	89	0	52	34	2	2	60	1.26
23340892--23340919	2	14.0	2	100	0	56	50	0	0	50	1.00
23340919--23340954	2	18.0	2	94	0	63	2	0	47	50	1.15
23342838--23342892	25	2.2	25	80	3	67	54	0	1	43	1.10
23342846--23342893	18	2.6	18	76	3	60	58	0	0	41	0.98
23346621--23346708	44	2.0	44	97	0	167	42	19	9	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23351734--23351759	13	2.0	13	100	0	52	46	0	0	53	1.00
23351840--23351925	23	3.9	22	75	15	79	48	1	0	50	1.08
23353444--23353504	31	2.0	31	84	9	81	37	1	0	60	1.07
23353509--23353555	13	3.4	14	83	13	62	31	6	0	61	1.21
23353513--23353544	15	2.1	16	83	16	50	28	6	0	65	1.16
23354254--23354339	31	2.7	31	74	5	82	48	0	5	45	1.26
23355059--23355207	74	2.0	74	98	0	289	34	12	14	37	1.85
23359312--23359348	15	2.5	15	91	4	58	62	2	0	35	1.10
23359316--23359903	59	10.0	59	79	8	485	48	4	8	38	1.53
23360697--23360869	63	2.8	63	70	12	149	35	14	10	39	1.80
23364996--23365150	63	2.5	61	80	7	150	43	14	11	30	1.81
23366084--23366133	2	25.0	2	87	0	73	48	4	2	46	1.32
23366410--23366435	2	13.0	2	100	0	52	50	0	50	0	1.00
23367462--23367499	20	1.9	20	94	0	67	71	10	7	10	1.32
23373692--23373813	65	1.9	65	84	6	167	45	11	13	29	1.78
23373730--23373937	108	1.9	109	80	4	242	46	12	7	33	1.71
23373850--23373985	63	2.2	63	82	5	168	44	11	9	34	1.74
23373934--23374126	61	3.1	64	76	8	191	39	11	11	37	1.77
23374364--23374672	161	1.9	160	91	2	503	30	16	9	43	1.79
23389737--23389762	2	13.0	2	100	0	52	50	0	0	50	1.00
23390281--23390318	2	19.5	2	94	5	69	0	52	0	47	1.00
23390343--23390376	17	2.0	17	88	11	52	11	14	14	58	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23394057--23394307	122	2.0	123	89	2	380	30	19	17	32	1.95
23395710--23395764	24	2.3	24	93	3	94	32	16	5	45	1.70
23399474--23399735	131	2.0	131	100	0	524	29	22	22	25	1.99
23399796--23399862	12	5.7	12	73	18	52	56	2	1	38	1.24
23399796--23399865	23	2.9	25	73	14	67	57	2	1	38	1.23
23402030--23402093	33	1.9	33	83	0	83	59	0	1	39	1.07
23402039--23402080	19	2.2	20	91	4	68	61	0	0	38	0.96
23402052--23402093	13	3.2	13	83	16	52	61	0	2	35	1.09
23406101--23406127	3	9.0	3	100	0	54	0	66	0	33	0.92
23410700--23410733	1	34.0	1	100	0	68	100	0	0	0	0.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131