genome.fa.s2.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167827.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_10, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24162007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   

This is table  21  of  131  ( 15626 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5153672--5153703	5	6.4	5	96	0	55	0	34	43	21	1.53
5153918--5153962	19	2.4	18	88	7	63	24	22	28	24	1.99
5154097--5154152	26	2.2	26	83	6	69	39	17	5	37	1.73
5154410--5154516	42	2.5	43	75	13	107	65	5	7	21	1.39
5154416--5154514	41	2.5	39	73	12	94	63	6	8	22	1.44
5154555--5154657	3	32.7	3	70	26	56	64	3	0	32	1.12
5154572--5154662	32	2.8	33	76	17	82	62	5	0	31	1.18
5154576--5154649	11	7.2	10	71	14	53	63	4	0	32	1.13
5154558--5154660	24	4.2	25	78	16	99	64	3	0	32	1.12
5154835--5154937	1	103.0	1	85	0	134	1	0	5	92	0.46
5154835--5154937	23	4.4	23	92	2	170	1	0	5	92	0.46
5154944--5155460	80	6.5	80	93	5	863	37	22	17	22	1.93
5154944--5155460	120	4.3	119	94	3	891	37	22	17	22	1.93
5154944--5155460	238	2.2	238	94	4	900	37	22	17	22	1.93
5156472--5156571	9	11.2	9	75	17	84	11	14	0	75	1.06
5156472--5156570	17	5.6	18	75	19	84	11	14	0	74	1.07
5156540--5156582	9	4.8	9	85	8	52	9	2	2	86	0.76
5156523--5156580	17	3.3	18	85	4	66	12	6	1	79	1.00
5163803--5163849	15	3.1	15	84	3	67	51	4	23	21	1.65
5166998--5167642	59	10.9	59	84	9	787	33	13	8	44	1.74
5166993--5167631	295	2.2	295	89	4	966	33	13	8	44	1.74
5167780--5167811	5	6.4	5	96	0	55	0	34	43	21	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5168036--5168087	20	2.6	20	85	8	70	25	21	25	28	1.99
5168121--5168161	19	2.1	20	90	4	66	19	21	31	26	1.97
5168230--5168283	25	2.2	25	86	6	74	33	18	7	40	1.78
5168639--5168735	3	32.7	3	76	15	69	67	4	2	26	1.20
5169779--5169811	3	11.0	3	100	0	66	66	0	0	33	0.92
5169810--5169843	3	11.0	3	93	6	59	32	2	0	64	1.08
5171028--5171091	19	3.4	19	75	14	60	45	1	0	53	1.10
5171028--5171093	18	3.5	18	74	15	62	46	1	0	51	1.10
5175222--5175266	22	2.0	22	91	0	72	40	4	22	33	1.74
5178604--5178658	22	2.5	23	82	11	71	38	0	1	60	1.08
5179637--5179711	34	2.1	36	80	9	84	50	0	1	48	1.09
5179657--5179737	40	2.0	42	80	9	96	49	2	1	46	1.23
5181699--5181733	2	17.5	2	100	0	70	51	0	0	48	1.00
5181931--5181970	2	20.0	2	100	0	80	50	0	0	50	1.00
5182098--5182132	2	17.5	2	100	0	70	51	0	0	48	1.00
5182855--5183017	88	1.9	88	87	5	240	55	8	9	26	1.60
5183258--5183284	2	13.5	2	100	0	54	51	0	0	48	1.00
5182154--5183691	789	2.0	778	84	6	2015	45	7	10	35	1.68
5183485--5184587	350	3.2	351	82	6	1328	44	9	9	35	1.69
5190914--5190975	33	1.9	33	83	6	83	48	3	3	45	1.34
5191199--5191229	16	1.9	16	93	0	53	80	6	0	12	0.89
5195598--5195627	15	1.9	16	93	6	53	33	13	23	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5195633--5195748	57	2.1	56	82	11	139	24	12	13	49	1.77
5195786--5195934	52	2.9	51	79	6	142	32	16	17	33	1.92
5195619--5195939	50	6.1	52	71	13	194	28	14	16	41	1.87
5197625--5198128	212	2.3	215	82	5	576	46	7	9	36	1.65
5197713--5198145	216	2.0	212	87	4	611	47	6	9	36	1.62
5198741--5198774	16	2.1	16	88	0	50	17	0	2	79	0.86
5199346--5199379	14	2.5	14	90	4	52	32	0	0	67	0.91
5199523--5199561	16	2.4	16	91	8	62	51	2	2	43	1.29
5199701--5199746	23	2.0	22	84	12	58	58	2	0	39	1.10
5199731--5199798	28	2.4	28	76	11	68	54	1	1	42	1.18
5203841--5203879	19	2.2	17	86	9	51	71	2	5	20	1.17
5204120--5204222	32	3.3	31	78	10	104	46	0	3	49	1.20
5207228--5207255	2	14.0	2	100	0	56	50	0	50	0	1.00
5209243--5209314	37	1.9	37	88	0	108	27	13	8	50	1.71
5216890--5216924	2	17.5	2	100	0	70	51	0	0	48	1.00
5217533--5217602	17	3.8	17	71	17	59	60	2	0	37	1.12
5220149--5220180	8	4.1	8	92	8	57	12	0	0	87	0.54
5220149--5220180	15	2.1	16	94	5	57	12	0	0	87	0.54
5229339--5229377	16	2.4	16	78	0	51	74	0	2	23	0.94
5231448--5231481	7	4.9	7	86	13	52	55	2	0	41	1.15
5236537--5236643	32	3.5	30	71	17	94	34	2	3	58	1.30
5236509--5236635	60	2.1	58	81	12	148	35	2	3	59	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5236536--5236635	30	3.3	30	71	12	89	36	2	4	58	1.29
5236975--5237025	26	2.0	26	88	7	77	50	0	0	49	1.00
5237033--5237066	13	2.5	14	85	4	52	55	0	0	44	0.99
5240762--5240824	21	3.0	21	75	6	56	44	0	3	52	1.17
5240798--5240879	29	2.7	29	72	14	76	48	1	1	48	1.17
5242179--5242221	10	4.3	10	87	0	50	32	0	9	58	1.30
5242265--5242307	15	2.8	16	89	6	63	27	0	4	67	1.10
5244110--5244148	6	6.5	6	84	0	51	2	23	15	58	1.49
5244106--5244142	12	3.1	12	88	0	56	0	24	16	59	1.37
5244636--5244749	17	6.7	17	79	9	117	33	17	22	26	1.96
5244647--5244745	34	2.8	35	90	3	155	34	17	22	26	1.95
5244636--5244749	53	2.2	50	83	9	133	33	17	22	26	1.96
5247071--5247116	23	2.1	23	84	8	60	26	4	36	32	1.76
5247253--5247302	19	2.6	19	83	0	64	10	6	4	80	1.02
5247778--5247804	7	3.9	7	100	0	54	85	0	0	14	0.61
5248089--5248218	51	2.6	51	80	6	140	40	7	13	38	1.73
5251743--5251808	33	2.0	32	85	8	87	48	12	16	22	1.79
5260314--5260563	40	6.2	40	79	7	213	30	12	15	42	1.83
5260314--5260563	80	3.1	80	81	4	236	30	12	15	42	1.83
5260513--5260732	83	2.6	83	92	4	354	28	12	17	41	1.86
5260553--5260691	42	3.3	42	70	13	133	29	11	15	43	1.82
5260593--5260723	42	3.1	41	68	12	106	29	13	18	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5261746--5261835	8	11.5	8	86	13	134	13	0	12	74	1.08
5266948--5266977	16	1.9	15	93	6	51	46	0	0	53	1.00
5267088--5267124	15	2.5	15	90	0	56	45	0	0	54	1.00
5267091--5267137	20	2.3	20	78	7	51	51	2	0	46	1.13
5268780--5268850	34	2.1	33	81	2	79	38	9	19	32	1.85
5270051--5270121	34	2.1	34	89	5	108	45	12	15	26	1.82
5270326--5270442	59	2.0	60	81	9	143	31	17	8	42	1.79
5270515--5270680	59	2.8	60	76	14	157	29	19	12	39	1.87
5270632--5270791	65	2.5	62	75	11	155	40	13	13	33	1.83
5270667--5270938	149	1.8	148	80	6	325	38	12	10	38	1.79
5271745--5271773	14	2.1	14	93	6	51	58	20	6	13	1.58
5282604--5282632	15	2.0	15	93	6	51	20	0	0	79	0.74
5283461--5283513	3	17.7	3	77	14	56	69	0	1	28	0.99
5283461--5283517	21	2.6	23	81	10	66	70	0	1	28	0.98
5283460--5283514	18	3.1	18	82	12	69	70	0	1	27	0.97
5283506--5283553	18	2.5	20	83	16	66	83	4	2	10	0.87
5283506--5283552	17	2.8	17	78	9	51	85	4	2	8	0.81
5283736--5283901	44	3.8	44	71	7	122	43	17	13	25	1.85
5283771--5283906	44	3.1	44	77	1	137	46	15	13	24	1.82
5283739--5283906	89	1.9	90	82	7	218	42	17	14	25	1.87
5283937--5284057	44	2.8	43	81	3	152	44	17	14	23	1.85
5285756--5285793	19	2.0	19	85	10	51	13	15	0	71	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5285767--5285809	18	2.5	17	84	3	59	4	13	0	81	0.84
5285767--5285814	8	5.6	8	83	11	60	4	12	0	83	0.79
5290786--5290834	14	3.0	17	82	14	59	38	4	26	30	1.75
5290786--5290834	15	3.2	16	81	16	59	38	4	26	30	1.75
5292307--5292338	16	1.9	17	93	6	57	15	3	0	81	0.82
5292503--5292531	14	2.0	15	93	6	51	24	0	0	75	0.80
5292840--5292877	19	2.0	19	89	0	58	0	36	0	63	0.95
5293349--5293373	12	2.1	12	100	0	50	68	0	0	32	0.90
5293349--5293417	11	5.5	12	70	21	52	68	1	4	26	1.17
5297600--5298295	207	3.4	200	82	7	792	34	13	11	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131